Wall clock time and date at job start Tue Mar 31 2020 23:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42906 * 109.47132 * 2 1 4 4 C 1.35675 * 116.99852 * 179.97438 * 3 2 1 5 5 C 1.38777 * 119.63578 * 180.02562 * 4 3 2 6 6 C 1.38588 * 119.27778 * 179.97438 * 5 4 3 7 7 C 1.38496 * 118.56423 * 359.97438 * 6 5 4 8 8 C 1.38981 * 119.22461 * 0.02562 * 7 6 5 9 9 N 1.39002 * 119.66862 * 180.02562 * 8 7 6 10 10 C 1.46894 * 110.99525 * 180.02562 * 9 8 7 11 11 C 1.53243 * 109.33846 * 187.25426 * 10 9 8 12 12 N 1.47082 * 108.51900 * 306.16925 * 11 10 9 13 13 S 1.65608 * 120.87917 * 231.18699 * 12 11 10 14 14 O 1.42100 * 106.40059 * 203.54080 * 13 12 11 15 15 O 1.42096 * 106.40050 * 336.46113 * 13 12 11 16 16 C 1.76202 * 107.21643 * 90.00137 * 13 12 11 17 17 H 1.07996 * 120.00069 * 359.97438 * 16 13 12 18 18 C 1.37877 * 119.99696 * 180.02562 * 16 13 12 19 19 N 1.31516 * 120.00169 * 359.97438 * 18 16 13 20 20 Si 1.86797 * 120.00014 * 179.97438 * 18 16 13 21 21 H 1.48504 * 109.47375 * 89.99544 * 20 18 16 22 22 H 1.48497 * 109.47220 * 209.99725 * 20 18 16 23 23 H 1.48508 * 109.47201 * 329.99615 * 20 18 16 24 24 C 1.47077 * 118.24009 * 51.45654 * 12 11 10 25 25 C 1.46902 * 111.00014 * 304.29790 * 9 8 7 26 26 N 1.32320 * 119.63974 * 0.25332 * 4 3 2 27 27 H 1.09001 * 109.47134 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47520 * 300.00342 * 1 2 3 29 29 H 1.08999 * 109.46890 * 60.00001 * 1 2 3 30 30 H 1.08995 * 109.47918 * 240.00249 * 2 1 3 31 31 H 1.08999 * 109.46890 * 119.99999 * 2 1 3 32 32 H 1.08006 * 120.36452 * 0.02562 * 5 4 3 33 33 H 1.08000 * 120.72054 * 179.97438 * 6 5 4 34 34 H 1.08001 * 120.38829 * 180.02562 * 7 6 5 35 35 H 1.08995 * 109.49706 * 67.29527 * 10 9 8 36 36 H 1.09004 * 109.51944 * 307.22338 * 10 9 8 37 37 H 1.09002 * 109.63078 * 186.46427 * 11 10 9 38 38 H 1.08992 * 109.63090 * 65.87499 * 11 10 9 39 39 H 0.96999 * 119.99975 * 180.02562 * 19 18 16 40 40 H 1.09000 * 109.62570 * 68.25311 * 24 12 11 41 41 H 1.08993 * 109.63065 * 188.83160 * 24 12 11 42 42 H 1.09004 * 109.49201 * 292.71044 * 25 9 8 43 43 H 1.09003 * 109.48994 * 52.76337 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3514 1.5251 0.0005 5 6 3.8737 2.8108 0.0011 6 6 5.2487 2.9837 0.0022 7 6 6.0576 1.8595 0.0032 8 6 5.4693 0.6004 0.0026 9 7 6.2723 -0.5342 0.0042 10 6 5.4569 -1.7561 0.0025 11 6 6.3680 -2.9744 0.1869 12 7 7.4222 -2.9288 -0.8378 13 16 7.7335 -4.2431 -1.7961 14 8 9.0742 -4.1032 -2.2458 15 8 7.2679 -5.3797 -1.0817 16 6 6.7120 -4.1005 -3.2247 17 1 6.0466 -3.2565 -3.3308 18 6 6.7615 -5.0671 -4.2067 19 7 7.5715 -6.0951 -4.0773 20 14 5.6782 -4.9164 -5.7210 21 1 6.4026 -4.1615 -6.7749 22 1 5.3416 -6.2718 -6.2257 23 1 4.4289 -4.1960 -5.3662 24 6 8.1965 -1.6870 -0.9848 25 6 7.2090 -0.5178 -1.1273 26 7 4.1508 0.4706 -0.0040 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5137 -0.8899 31 1 1.8932 -0.5138 0.8900 32 1 3.2158 3.6673 0.0015 33 1 5.6803 3.9738 0.0022 34 1 7.1329 1.9601 0.0045 35 1 4.9270 -1.8386 -0.9463 36 1 4.7362 -1.7141 0.8192 37 1 5.7852 -3.8883 0.0721 38 1 6.8199 -2.9470 1.1784 39 1 7.6066 -6.7749 -4.7684 40 1 8.8207 -1.5383 -0.1037 41 1 8.8230 -1.7493 -1.8745 42 1 6.6543 -0.6177 -2.0603 43 1 7.7593 0.4232 -1.1303 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192963955.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:59 Heat of formation + Delta-G solvation = -70.607215 kcal Electronic energy + Delta-G solvation = -28361.863472 eV Core-core repulsion = 24341.500226 eV Total energy + Delta-G solvation = -4020.363246 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.95852 -39.10391 -37.52988 -35.34310 -34.36031 -33.99307 -33.09491 -32.49756 -31.80421 -30.83801 -29.33580 -26.18077 -26.11431 -24.43268 -23.46986 -22.44329 -22.05207 -20.42600 -18.73917 -18.48146 -17.71078 -16.86788 -16.40422 -16.26827 -16.09963 -15.46284 -15.05976 -14.94223 -14.87549 -14.57933 -14.32515 -13.85760 -13.83670 -13.59848 -13.35235 -13.17600 -12.75417 -12.42392 -12.24290 -12.04870 -12.00614 -11.70953 -11.63970 -11.25904 -11.23090 -11.11979 -11.04423 -10.90172 -10.63965 -10.33587 -10.19312 -10.15464 -10.06618 -9.70842 -9.37310 -9.28142 -8.93763 -8.29017 -7.93007 -6.73061 -5.35618 1.10612 1.23608 2.19845 2.90609 3.03388 3.10475 3.16633 3.40306 3.78057 4.01929 4.33278 4.45591 4.60631 4.83010 4.85731 4.92863 4.96881 5.08237 5.12823 5.20943 5.21816 5.32077 5.41434 5.49971 5.59546 5.60983 5.66333 5.68206 5.78384 5.85325 5.86592 5.94883 6.04700 6.12808 6.14863 6.22090 6.34459 6.35887 6.67362 6.73873 6.99091 7.28738 7.31445 7.49103 7.86315 7.93365 8.85742 10.20519 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012120 B = 0.003701 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.583624 B = 7563.792826 C = 8640.927800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.065 3.935 3 O -0.309 6.309 4 C 0.349 3.651 5 C -0.229 4.229 6 C -0.021 4.021 7 C -0.228 4.228 8 C 0.360 3.640 9 N -0.472 5.472 10 C 0.054 3.946 11 C 0.129 3.871 12 N -1.016 6.016 13 S 2.715 3.285 14 O -1.003 7.003 15 O -1.002 7.002 16 C -1.020 5.020 17 H 0.099 0.901 18 C 0.134 3.866 19 N -0.845 5.845 20 Si 0.918 3.082 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.264 1.264 24 C 0.132 3.868 25 C 0.046 3.954 26 N -0.574 5.574 27 H 0.079 0.921 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.136 0.864 33 H 0.140 0.860 34 H 0.139 0.861 35 H 0.058 0.942 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.066 0.934 39 H 0.291 0.709 40 H 0.069 0.931 41 H 0.100 0.900 42 H 0.057 0.943 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.210 16.614 7.450 19.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.010 4.010 3 O -0.217 6.217 4 C 0.169 3.831 5 C -0.250 4.250 6 C -0.046 4.046 7 C -0.251 4.251 8 C 0.128 3.872 9 N -0.189 5.189 10 C -0.075 4.075 11 C 0.002 3.998 12 N -0.851 5.851 13 S 2.816 3.184 14 O -0.993 6.993 15 O -0.992 6.992 16 C -1.153 5.153 17 H 0.118 0.882 18 C -0.084 4.084 19 N -0.475 5.475 20 Si 0.742 3.258 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.188 1.188 24 C 0.005 3.995 25 C -0.081 4.081 26 N -0.304 5.304 27 H 0.098 0.902 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.154 0.846 33 H 0.158 0.842 34 H 0.157 0.843 35 H 0.076 0.924 36 H 0.108 0.892 37 H 0.116 0.884 38 H 0.084 0.916 39 H 0.102 0.898 40 H 0.088 0.912 41 H 0.119 0.881 42 H 0.075 0.925 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.757 15.018 8.036 18.716 hybrid contribution -1.084 0.942 -1.711 2.234 sum -8.842 15.960 6.325 19.311 Atomic orbital electron populations 1.21816 0.93108 1.02979 1.03055 1.22607 0.94613 0.80963 1.02796 1.86221 1.17013 1.30792 1.87654 1.19537 0.83545 0.89506 0.90508 1.20854 0.95823 0.95398 1.12972 1.21193 0.92091 0.98962 0.92371 1.21402 1.01445 0.91216 1.11053 1.19548 0.86499 0.90934 0.90195 1.59048 1.17223 1.01299 1.41292 1.22434 0.94695 0.87437 1.02899 1.21380 0.88901 0.97671 0.91839 1.58362 1.46531 1.29510 1.50686 1.00555 0.74124 0.70160 0.73580 1.93354 1.38306 1.85445 1.82189 1.93355 1.82915 1.47991 1.74962 1.30603 1.41804 1.17584 1.25300 0.88222 1.24729 0.93057 0.92101 0.98494 1.69891 1.32770 1.09553 1.35237 0.86200 0.80499 0.78492 0.80600 1.19176 1.19885 1.18769 1.21404 0.92446 0.82514 1.03107 1.22838 0.94356 1.00609 0.90328 1.67203 1.05522 1.33749 1.23899 0.90214 0.91801 0.91763 0.91444 0.91552 0.84574 0.84183 0.84336 0.92392 0.89199 0.88377 0.91582 0.89847 0.91222 0.88141 0.92459 0.89155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.28 37.16 0.38 -0.87 16 2 C 0.07 0.72 6.03 37.16 0.22 0.94 16 3 O -0.31 -3.90 10.11 -18.73 -0.19 -4.09 16 4 C 0.35 4.61 7.48 -17.14 -0.13 4.48 16 5 C -0.23 -2.48 10.03 -39.25 -0.39 -2.88 16 6 C -0.02 -0.20 10.16 -39.36 -0.40 -0.60 16 7 C -0.23 -2.55 9.16 -39.21 -0.36 -2.91 16 8 C 0.36 4.96 6.40 -155.00 -0.99 3.97 16 9 N -0.47 -6.80 4.65 -172.64 -0.80 -7.61 16 10 C 0.05 0.83 4.82 -3.70 -0.02 0.81 16 11 C 0.13 2.21 6.53 -3.60 -0.02 2.19 16 12 N -1.02 -20.18 3.32 -112.97 -0.38 -20.56 16 13 S 2.71 70.85 4.98 -107.50 -0.54 70.31 16 14 O -1.00 -28.57 16.79 -57.17 -0.96 -29.53 16 15 O -1.00 -28.76 16.80 -57.17 -0.96 -29.72 16 16 C -1.02 -27.62 9.75 30.60 0.30 -27.33 16 17 H 0.10 2.50 7.81 -52.49 -0.41 2.09 16 18 C 0.13 3.71 5.46 -17.82 -0.10 3.61 16 19 N -0.84 -24.61 13.19 55.43 0.73 -23.87 16 20 Si 0.92 20.47 29.54 -169.99 -5.02 15.45 16 21 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 22 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 23 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 24 C 0.13 2.16 6.56 -3.36 -0.02 2.14 16 25 C 0.05 0.64 5.43 -3.46 -0.02 0.62 16 26 N -0.57 -8.24 7.52 -12.51 -0.09 -8.33 16 27 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 31 H 0.07 0.74 8.11 -51.93 -0.42 0.32 16 32 H 0.14 1.20 8.06 -52.48 -0.42 0.78 16 33 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.14 1.29 7.13 -52.49 -0.37 0.91 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.09 1.29 7.65 -51.93 -0.40 0.89 16 37 H 0.10 1.77 7.22 -51.93 -0.37 1.39 16 38 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.29 7.62 8.31 -40.82 -0.34 7.28 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.10 1.70 7.21 -51.93 -0.37 1.33 16 42 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.09 0.99 6.62 -51.93 -0.34 0.64 16 LS Contribution 367.57 15.07 5.54 5.54 Total: -1.00 -35.09 367.57 -10.27 -45.36 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -6.06 Total: 2.86 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: -1.55 Total: -15.82 kcal Atomic # 7 Polarization: -59.83 SS G_CDS: -0.54 Total: -60.37 kcal Atomic # 8 Polarization: -61.23 SS G_CDS: -2.11 Total: -63.34 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 16 Polarization: 70.85 SS G_CDS: -0.54 Total: 70.31 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.09 -10.27 -45.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192963955.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.243 kcal (2) G-P(sol) polarization free energy of solvation -35.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds