Wall clock time and date at job start Tue Mar 31 2020 23:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45208 * 109.47060 * 2 1 4 4 C 1.34225 * 116.99946 * 179.97438 * 3 2 1 5 5 O 1.20830 * 120.00282 * 359.97438 * 4 3 2 6 6 C 1.50702 * 120.00035 * 180.02562 * 4 3 2 7 7 N 1.46897 * 109.47188 * 175.45123 * 6 4 3 8 8 C 1.46904 * 110.99948 * 160.66555 * 7 6 4 9 9 C 1.50692 * 109.47272 * 287.38245 * 8 7 6 10 10 H 1.07997 * 120.00196 * 358.94937 * 9 8 7 11 11 C 1.37881 * 119.99778 * 178.94864 * 9 8 7 12 12 N 1.31516 * 119.99985 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99814 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47320 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47117 * 120.00259 * 13 11 9 16 16 H 1.48505 * 109.46944 * 240.00068 * 13 11 9 17 17 C 1.46899 * 111.00428 * 284.62931 * 7 6 4 18 18 C 1.50696 * 109.46945 * 170.00004 * 17 7 6 19 19 C 1.33449 * 122.71812 * 95.00028 * 18 17 7 20 20 S 1.76168 * 108.06449 * 179.97438 * 19 18 17 21 21 C 1.70976 * 90.34027 * 359.97438 * 20 19 18 22 22 N 1.39000 * 124.94658 * 180.02562 * 21 20 19 23 23 C 1.34782 * 119.99724 * 0.02562 * 22 21 20 24 24 C 1.50694 * 119.99840 * 180.27461 * 23 22 21 25 25 O 1.21286 * 120.00137 * 0.02562 * 23 22 21 26 26 N 1.29618 * 110.10861 * 0.26668 * 21 20 19 27 27 H 1.08994 * 109.47331 * 299.99927 * 1 2 3 28 28 H 1.09007 * 109.46755 * 59.99695 * 1 2 3 29 29 H 1.08997 * 109.47006 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47255 * 240.00506 * 2 1 3 31 31 H 1.08999 * 109.47192 * 119.99891 * 2 1 3 32 32 H 1.09002 * 109.46787 * 55.45623 * 6 4 3 33 33 H 1.09001 * 109.46687 * 295.45742 * 6 4 3 34 34 H 1.08997 * 109.46442 * 47.38550 * 8 7 6 35 35 H 1.08994 * 109.46599 * 167.37836 * 8 7 6 36 36 H 0.96999 * 119.99666 * 180.02562 * 12 11 9 37 37 H 1.08996 * 109.47392 * 49.99191 * 17 7 6 38 38 H 1.09003 * 109.46622 * 289.99385 * 17 7 6 39 39 H 1.08003 * 125.96675 * 359.92151 * 19 18 17 40 40 H 0.96998 * 120.00343 * 180.02562 * 22 21 20 41 41 H 1.09004 * 109.47540 * 179.72464 * 24 23 22 42 42 H 1.08997 * 109.47328 * 299.72885 * 24 23 22 43 43 H 1.09008 * 109.47016 * 59.72699 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0808 0.5867 0.0015 6 6 3.9207 2.9375 0.0012 7 7 5.3836 2.8623 0.1115 8 6 6.0103 4.1135 -0.3354 9 6 5.9116 4.2169 -1.8355 10 1 5.4465 3.4238 -2.4021 11 6 6.4151 5.3242 -2.4848 12 7 6.9819 6.2898 -1.7949 13 14 6.2922 5.4527 -4.3443 14 1 5.6155 4.2445 -4.8804 15 1 5.5076 6.6605 -4.7062 16 1 7.6553 5.5558 -4.9246 17 6 5.7918 2.5294 1.4828 18 6 7.2665 2.2204 1.5069 19 6 8.1901 3.1345 1.8103 20 16 9.7716 2.3633 1.7224 21 6 9.0365 0.8826 1.2860 22 7 9.7199 -0.3001 1.0282 23 6 11.0644 -0.3342 1.1158 24 6 11.8058 -1.6148 0.8303 25 8 11.6780 0.6667 1.4201 26 7 7.7496 1.0247 1.2257 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.5207 3.4957 0.8477 33 1 3.6517 3.4423 -0.9267 34 1 5.4977 4.9599 0.1217 35 1 7.0591 4.1206 -0.0388 36 1 7.3358 7.0689 -2.2517 37 1 5.2325 1.6596 1.8274 38 1 5.5872 3.3759 2.1383 39 1 8.0012 4.1671 2.0644 40 1 9.2292 -1.1007 0.7851 41 1 12.8768 -1.4483 0.9462 42 1 11.4804 -2.3864 1.5280 43 1 11.5964 -1.9360 -0.1902 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232286342.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:00 Heat of formation + Delta-G solvation = -59.507999 kcal Electronic energy + Delta-G solvation = -27359.671022 eV Core-core repulsion = 23339.789074 eV Total energy + Delta-G solvation = -4019.881948 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.37154 -40.00902 -39.17838 -36.85568 -35.70184 -34.77524 -32.56377 -31.70242 -30.93339 -29.45496 -28.00139 -27.28136 -24.84423 -23.55081 -23.03825 -21.59301 -21.28167 -20.17674 -19.37736 -17.90818 -17.26286 -16.81516 -16.46499 -16.42252 -16.14483 -15.95778 -15.82303 -14.83456 -14.56537 -14.42395 -14.22729 -13.76472 -13.56220 -13.34070 -13.04825 -12.97316 -12.79354 -12.55500 -12.41099 -12.26281 -11.95660 -11.92464 -11.47557 -11.36313 -11.18207 -11.00969 -10.79858 -10.68543 -10.58674 -10.28800 -10.01109 -9.92000 -9.69234 -9.26937 -9.25038 -8.71897 -8.44583 -7.89207 -7.36219 -6.04332 -4.05201 1.12581 1.54426 2.24427 2.29948 2.71268 2.77900 2.97629 3.30739 3.36671 3.38825 3.44360 4.42729 4.43153 4.82851 4.93422 4.95752 4.97274 5.01803 5.03683 5.18954 5.31488 5.31736 5.48202 5.61496 5.72270 5.76688 5.78262 5.86759 5.94885 5.99506 6.01890 6.11859 6.19121 6.59812 6.80389 6.93401 7.11487 7.21874 7.71433 7.76816 7.94530 8.08134 8.26774 8.35040 8.47216 9.02149 9.58987 11.06075 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.007136 B = 0.004161 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3922.929721 B = 6727.408864 C = 9356.317257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.062 3.938 3 O -0.368 6.368 4 C 0.454 3.546 5 O -0.483 6.483 6 C 0.074 3.926 7 N -0.514 5.514 8 C 0.189 3.811 9 C -0.508 4.508 10 H 0.063 0.937 11 C 0.058 3.942 12 N -0.896 5.896 13 Si 0.895 3.105 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.284 1.284 17 C 0.129 3.871 18 C 0.115 3.885 19 C -0.290 4.290 20 S 0.219 5.781 21 C 0.224 3.776 22 N -0.622 5.622 23 C 0.507 3.493 24 C -0.165 4.165 25 O -0.512 6.512 26 N -0.478 5.478 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.128 0.872 34 H -0.003 1.003 35 H 0.045 0.955 36 H 0.261 0.739 37 H 0.078 0.922 38 H 0.043 0.957 39 H 0.175 0.825 40 H 0.422 0.578 41 H 0.101 0.899 42 H 0.094 0.906 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.671 -14.056 8.450 16.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.286 6.286 4 C 0.296 3.704 5 O -0.368 6.368 6 C -0.055 4.055 7 N -0.240 5.240 8 C 0.065 3.935 9 C -0.546 4.546 10 H 0.081 0.919 11 C -0.143 4.143 12 N -0.536 5.536 13 Si 0.723 3.277 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.210 1.210 17 C -0.001 4.001 18 C -0.018 4.018 19 C -0.431 4.431 20 S 0.469 5.531 21 C -0.143 4.143 22 N -0.272 5.272 23 C 0.294 3.706 24 C -0.224 4.224 25 O -0.387 6.387 26 N -0.200 5.200 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.145 0.855 34 H 0.015 0.985 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.097 0.903 38 H 0.061 0.939 39 H 0.193 0.807 40 H 0.260 0.740 41 H 0.119 0.881 42 H 0.113 0.887 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.021 -14.086 8.327 16.395 hybrid contribution -1.497 0.338 -0.886 1.773 sum -0.476 -13.748 7.441 15.640 Atomic orbital electron populations 1.21785 0.93137 1.02487 1.03382 1.22876 0.94888 0.81205 1.02230 1.86518 1.25693 1.31512 1.84918 1.24235 0.79773 0.93707 0.72734 1.90662 1.59908 1.42729 1.43506 1.21506 0.90097 0.88834 1.05067 1.61604 1.03763 1.39022 1.19632 1.19931 0.95206 0.82266 0.96121 1.21173 1.38205 1.03824 0.91444 0.91879 1.24945 0.95296 0.95644 0.98439 1.69951 1.39438 1.08721 1.35442 0.86485 0.77790 0.77920 0.85532 1.19677 1.21027 1.21028 1.20549 0.88948 0.99583 0.91046 1.19431 0.97076 0.86378 0.98896 1.27267 0.96755 1.05409 1.13652 1.84589 1.05687 0.99160 1.63673 1.23364 0.92012 0.93468 1.05496 1.42818 1.06906 1.10507 1.66981 1.21224 0.80757 0.92008 0.76657 1.21861 1.01966 0.94001 1.04598 1.90696 1.66158 1.35881 1.45949 1.66054 1.08667 1.25461 1.19820 0.91671 0.91539 0.90696 0.91557 0.91721 0.91772 0.85471 0.98484 0.93671 0.92950 0.90315 0.93914 0.80741 0.73988 0.88062 0.88695 0.88550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 10.29 37.16 0.38 -1.01 16 2 C 0.06 0.79 6.19 37.16 0.23 1.02 16 3 O -0.37 -5.84 10.22 -39.24 -0.40 -6.24 16 4 C 0.45 8.41 7.53 36.01 0.27 8.68 16 5 O -0.48 -10.25 15.17 -18.75 -0.28 -10.53 16 6 C 0.07 1.42 5.42 -4.98 -0.03 1.39 16 7 N -0.51 -11.34 3.98 -238.97 -0.95 -12.29 16 8 C 0.19 4.78 4.59 -4.98 -0.02 4.75 16 9 C -0.51 -14.15 8.36 -34.44 -0.29 -14.44 16 10 H 0.06 1.79 7.75 -52.49 -0.41 1.38 16 11 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 12 N -0.90 -26.09 13.29 55.43 0.74 -25.36 16 13 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 14 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 16 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 17 C 0.13 2.52 5.05 -4.98 -0.03 2.50 16 18 C 0.11 2.29 5.63 -84.20 -0.47 1.82 16 19 C -0.29 -5.43 9.47 29.06 0.28 -5.15 16 20 S 0.22 3.82 20.22 -107.50 -2.17 1.65 16 21 C 0.22 3.91 8.19 -87.36 -0.72 3.20 16 22 N -0.62 -8.12 5.40 -13.07 -0.07 -8.19 16 23 C 0.51 5.97 7.90 -10.99 -0.09 5.88 16 24 C -0.16 -1.01 10.32 36.00 0.37 -0.64 16 25 O -0.51 -7.96 14.55 5.55 0.08 -7.88 16 26 N -0.48 -9.52 10.58 -11.28 -0.12 -9.64 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.86 8.13 -51.93 -0.42 0.44 16 31 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 32 H 0.06 1.06 8.00 -51.93 -0.42 0.64 16 33 H 0.13 2.53 7.12 -51.93 -0.37 2.16 16 34 H 0.00 -0.07 8.04 -51.93 -0.42 -0.49 16 35 H 0.05 1.22 5.67 -51.93 -0.29 0.93 16 36 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 37 H 0.08 1.51 6.82 -51.93 -0.35 1.16 16 38 H 0.04 0.75 8.08 -51.93 -0.42 0.33 16 39 H 0.18 3.06 8.06 -52.48 -0.42 2.63 16 40 H 0.42 4.31 8.82 -40.82 -0.36 3.95 16 41 H 0.10 0.59 8.12 -51.93 -0.42 0.17 16 42 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.10 0.44 8.14 -51.92 -0.42 0.02 16 LS Contribution 380.44 15.07 5.73 5.73 Total: -1.00 -35.90 380.44 -8.65 -44.55 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -5.98 Total: 1.93 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: -0.21 Total: 9.54 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: -0.40 Total: -55.47 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.60 Total: -24.65 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 3.82 SS G_CDS: -2.17 Total: 1.65 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.90 -8.65 -44.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232286342.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.954 kcal (2) G-P(sol) polarization free energy of solvation -35.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds