Wall clock time and date at job start Tue Mar 31 2020 23:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.47255 * 2 1 4 4 C 1.46493 * 120.00556 * 270.00493 * 3 2 1 5 5 C 1.53002 * 109.47211 * 270.00036 * 4 3 2 6 6 C 1.34783 * 119.99463 * 90.00454 * 3 2 1 7 7 O 1.21586 * 120.00032 * 359.97438 * 6 3 2 8 8 N 1.34774 * 119.99610 * 180.02562 * 6 3 2 9 9 C 1.39950 * 119.99868 * 185.30064 * 8 6 3 10 10 C 1.38868 * 120.06958 * 33.26931 * 9 8 6 11 11 C 1.38108 * 119.93057 * 180.02562 * 10 9 8 12 12 C 1.38279 * 120.07064 * 0.02562 * 11 10 9 13 13 S 1.76201 * 119.93166 * 179.97438 * 12 11 10 14 14 O 1.42103 * 106.40073 * 336.45911 * 13 12 11 15 15 O 1.42101 * 106.40124 * 203.54116 * 13 12 11 16 16 N 1.65597 * 107.21866 * 90.00007 * 13 12 11 17 17 C 1.36938 * 120.00150 * 64.72970 * 16 13 12 18 18 H 1.07999 * 119.99849 * 0.26762 * 17 16 13 19 19 C 1.38807 * 120.00101 * 180.27394 * 17 16 13 20 20 N 1.31621 * 120.00221 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 120.00223 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47072 * 89.99522 * 21 19 17 23 23 H 1.48497 * 109.47317 * 210.00073 * 21 19 17 24 24 H 1.48503 * 109.46968 * 330.00209 * 21 19 17 25 25 C 1.38275 * 120.14209 * 0.23381 * 12 11 10 26 26 C 1.38119 * 120.06568 * 359.48650 * 25 12 11 27 27 H 1.09001 * 109.46582 * 299.99439 * 1 2 3 28 28 H 1.09004 * 109.47163 * 59.99326 * 1 2 3 29 29 H 1.08994 * 109.47102 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46582 * 240.00561 * 2 1 3 31 31 H 1.08991 * 109.47501 * 120.00513 * 2 1 3 32 32 H 1.09000 * 109.47150 * 29.99921 * 4 3 2 33 33 H 1.08999 * 109.47433 * 149.99661 * 4 3 2 34 34 H 1.09000 * 109.46969 * 299.99996 * 5 4 3 35 35 H 1.08997 * 109.46573 * 59.99861 * 5 4 3 36 36 H 1.09005 * 109.47038 * 179.97438 * 5 4 3 37 37 H 0.96999 * 120.00646 * 5.29748 * 8 6 3 38 38 H 1.08002 * 120.03297 * 0.02562 * 10 9 8 39 39 H 1.08001 * 119.96861 * 180.02562 * 11 10 9 40 40 H 0.97007 * 119.99797 * 244.99486 * 16 13 12 41 41 H 0.96997 * 120.00047 * 179.97438 * 20 19 17 42 42 H 1.08002 * 119.97081 * 179.72036 * 25 12 11 43 43 H 1.07999 * 120.03723 * 180.24980 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.7075 1.8315 -1.7104 6 6 2.2431 2.0165 1.1673 7 8 2.0401 1.4433 2.2202 8 7 2.6919 3.2873 1.1674 9 6 3.0308 3.9096 2.3742 10 6 3.5724 3.1644 3.4133 11 6 3.9053 3.7814 4.6032 12 6 3.6994 5.1397 4.7607 13 16 4.1248 5.9230 6.2806 14 8 4.1097 4.9067 7.2737 15 8 3.3327 7.1000 6.3609 16 7 5.6973 6.4256 6.1497 17 6 6.0351 7.3864 5.2343 18 1 5.2752 7.8195 4.6007 19 6 7.3541 7.8036 5.1207 20 7 7.6789 8.7268 4.2405 21 14 8.6683 7.0549 6.2169 22 1 9.2486 5.8618 5.5498 23 1 9.7384 8.0552 6.4608 24 1 8.0626 6.6524 7.5117 25 6 3.1553 5.8836 3.7299 26 6 2.8256 5.2735 2.5354 27 1 -0.3632 0.5138 0.8901 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8898 32 1 1.5817 1.6879 -2.0283 33 1 2.0955 3.1411 -1.1382 34 1 4.3883 2.2156 -0.9507 35 1 3.8744 0.7623 -1.8408 36 1 3.8890 2.3451 -2.6546 37 1 2.7801 3.7706 0.3310 38 1 3.7331 2.1034 3.2910 39 1 4.3270 3.2025 5.4116 40 1 6.3798 6.0366 6.7188 41 1 8.6005 9.0186 4.1614 42 1 2.9915 6.9435 3.8575 43 1 2.4044 5.8557 1.7292 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001259727151.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:43 Heat of formation + Delta-G solvation = -62.789794 kcal Electronic energy + Delta-G solvation = -27597.520229 eV Core-core repulsion = 23577.495972 eV Total energy + Delta-G solvation = -4020.024257 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.99980 -38.73339 -36.52215 -36.20750 -35.05442 -34.81863 -34.66092 -32.35622 -31.44242 -30.68786 -30.30047 -28.86582 -24.21760 -24.16134 -24.01446 -22.74571 -22.14653 -19.92181 -18.90041 -18.62373 -18.28518 -17.58993 -17.16740 -16.40867 -16.04933 -15.52943 -15.27918 -14.82087 -14.51586 -14.42157 -14.14837 -14.05108 -13.83760 -13.43867 -13.24913 -13.02923 -12.98935 -12.73058 -12.70981 -12.50528 -12.44663 -12.12803 -11.65585 -11.42308 -11.34999 -11.22560 -11.14642 -11.04867 -10.94992 -10.60738 -10.39844 -10.32020 -10.24361 -10.05081 -9.84440 -9.12013 -8.65660 -8.43221 -8.14369 -6.36062 -3.88588 1.13902 1.52394 1.70979 2.24843 2.87759 3.14226 3.18113 3.21748 3.46885 3.84835 4.15090 4.27696 4.36670 4.61231 4.65856 4.72777 4.85499 4.97616 5.00430 5.06258 5.12022 5.19889 5.21768 5.28152 5.36978 5.42296 5.54577 5.61575 5.71784 5.74094 5.85092 5.89466 6.09776 6.17195 6.26978 6.40420 6.63209 6.64265 6.68539 6.89062 7.22973 7.54280 7.66931 8.25360 8.31223 8.95824 9.10641 10.75222 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016019 B = 0.002954 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.533265 B = 9475.844018 C =10288.160465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.128 3.872 3 N -0.627 5.627 4 C 0.103 3.897 5 C -0.175 4.175 6 C 0.705 3.295 7 O -0.566 6.566 8 N -0.686 5.686 9 C 0.200 3.800 10 C -0.147 4.147 11 C -0.006 4.006 12 C -0.675 4.675 13 S 2.646 3.354 14 O -0.998 6.998 15 O -0.964 6.964 16 N -0.983 5.983 17 C -0.287 4.287 18 H 0.121 0.879 19 C 0.049 3.951 20 N -0.878 5.878 21 Si 0.881 3.119 22 H -0.271 1.271 23 H -0.277 1.277 24 H -0.264 1.264 25 C 0.008 3.992 26 C -0.172 4.172 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.406 0.594 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.390 0.610 41 H 0.274 0.726 42 H 0.143 0.857 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.769 -14.062 -14.554 22.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.005 3.995 3 N -0.364 5.364 4 C -0.020 4.020 5 C -0.234 4.234 6 C 0.407 3.593 7 O -0.441 6.441 8 N -0.334 5.334 9 C 0.105 3.895 10 C -0.168 4.168 11 C -0.026 4.026 12 C -0.758 4.758 13 S 2.737 3.263 14 O -0.988 6.988 15 O -0.954 6.954 16 N -0.736 5.736 17 C -0.423 4.423 18 H 0.138 0.862 19 C -0.158 4.158 20 N -0.519 5.519 21 Si 0.708 3.292 22 H -0.196 1.196 23 H -0.203 1.203 24 H -0.190 1.190 25 C -0.012 4.012 26 C -0.193 4.193 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.244 0.756 38 H 0.154 0.846 39 H 0.154 0.846 40 H 0.225 0.775 41 H 0.084 0.916 42 H 0.161 0.839 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.575 -14.347 -13.318 21.792 hybrid contribution 1.270 -0.476 -0.834 1.593 sum -8.305 -14.823 -14.152 22.113 Atomic orbital electron populations 1.22161 0.95945 1.02254 1.02392 1.21325 0.94213 0.80686 1.03243 1.47275 1.69933 1.14903 1.04318 1.21550 0.97417 0.97180 0.85851 1.22256 0.96333 1.02799 1.02010 1.15862 0.78074 0.81112 0.84232 1.90968 1.57495 1.66048 1.29631 1.42863 1.68328 1.13294 1.08930 1.17657 0.94488 0.91799 0.85541 1.21134 1.01349 1.00734 0.93586 1.20733 0.92865 0.92597 0.96411 1.31684 1.14232 1.04856 1.25049 1.04616 0.73808 0.73088 0.74827 1.93444 1.87096 1.59530 1.58683 1.93500 1.68566 1.46862 1.86480 1.52072 1.27552 1.46673 1.47297 1.18974 0.96220 1.11506 1.15620 0.86175 1.25040 0.97192 0.96938 0.96648 1.69717 1.19477 1.29470 1.33273 0.86589 0.81868 0.79634 0.81144 1.19636 1.20256 1.18954 1.20721 0.90279 0.99748 0.90417 1.20884 1.06045 0.93118 0.99271 0.92021 0.92747 0.91500 0.90496 0.89581 0.89736 0.90874 0.92062 0.91997 0.91111 0.75628 0.84619 0.84587 0.77510 0.91595 0.83945 0.85488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.22 10.24 37.16 0.38 -0.84 16 2 C 0.13 0.99 6.13 -4.04 -0.02 0.96 16 3 N -0.63 -5.60 2.47 -179.43 -0.44 -6.04 16 4 C 0.10 0.58 5.94 -4.04 -0.02 0.56 16 5 C -0.18 -0.97 10.24 37.16 0.38 -0.59 16 6 C 0.71 9.08 8.02 -86.91 -0.70 8.38 16 7 O -0.57 -9.45 13.61 5.29 0.07 -9.38 16 8 N -0.69 -8.27 5.22 -14.22 -0.07 -8.34 16 9 C 0.20 3.11 6.28 -83.69 -0.53 2.58 16 10 C -0.15 -2.53 8.65 -39.40 -0.34 -2.87 16 11 C -0.01 -0.11 9.51 -39.61 -0.38 -0.49 16 12 C -0.68 -13.25 5.89 -39.55 -0.23 -13.48 16 13 S 2.65 57.41 5.70 -107.50 -0.61 56.80 16 14 O -1.00 -22.59 17.28 -57.17 -0.99 -23.57 16 15 O -0.96 -23.09 16.98 -57.17 -0.97 -24.06 16 16 N -0.98 -22.51 5.55 31.50 0.17 -22.34 16 17 C -0.29 -7.33 10.12 -15.06 -0.15 -7.48 16 18 H 0.12 3.19 8.05 -52.49 -0.42 2.76 16 19 C 0.05 1.27 5.50 -17.43 -0.10 1.17 16 20 N -0.88 -24.15 13.97 55.49 0.78 -23.38 16 21 Si 0.88 19.53 27.74 -169.99 -4.71 14.82 16 22 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 23 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.26 -5.56 6.52 56.52 0.37 -5.19 16 25 C 0.01 0.15 9.51 -39.61 -0.38 -0.23 16 26 C -0.17 -2.65 9.96 -39.39 -0.39 -3.05 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.40 8.07 -51.93 -0.42 -0.02 16 31 H 0.09 0.82 7.42 -51.93 -0.39 0.43 16 32 H 0.08 0.33 8.07 -51.93 -0.42 -0.09 16 33 H 0.07 0.35 6.29 -51.93 -0.33 0.03 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.41 3.57 6.51 -40.82 -0.27 3.30 16 38 H 0.14 2.30 6.41 -52.49 -0.34 1.96 16 39 H 0.14 2.32 7.61 -52.49 -0.40 1.92 16 40 H 0.39 8.42 5.89 -34.47 -0.20 8.22 16 41 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 42 H 0.14 2.52 7.60 -52.49 -0.40 2.12 16 43 H 0.13 1.54 8.06 -52.49 -0.42 1.11 16 LS Contribution 372.38 15.07 5.61 5.61 Total: -1.00 -33.98 372.38 -9.35 -43.33 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -5.70 Total: 11.92 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: -2.48 Total: -15.36 kcal Atomic # 7 Polarization: -60.54 SS G_CDS: 0.43 Total: -60.11 kcal Atomic # 8 Polarization: -55.13 SS G_CDS: -1.89 Total: -57.01 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -4.71 Total: 14.82 kcal Atomic # 16 Polarization: 57.41 SS G_CDS: -0.61 Total: 56.80 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.98 -9.35 -43.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259727151.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.460 kcal (2) G-P(sol) polarization free energy of solvation -33.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds