Wall clock time and date at job start Tue Mar 31 2020 22:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34235 * 117.00144 * 2 1 4 4 O 1.20823 * 119.99510 * 359.97438 * 3 2 1 5 5 C 1.50694 * 119.99969 * 179.97438 * 3 2 1 6 6 C 1.52996 * 109.46958 * 180.02562 * 5 3 2 7 7 N 1.46504 * 109.47277 * 180.02562 * 6 5 3 8 8 C 1.37107 * 119.99714 * 96.10737 * 7 6 5 9 9 H 1.08000 * 119.99247 * 222.59569 * 8 7 6 10 10 C 1.38943 * 120.00322 * 42.59629 * 8 7 6 11 11 N 1.31414 * 119.99891 * 17.82828 * 10 8 7 12 12 Si 1.86797 * 120.00202 * 197.83247 * 10 8 7 13 13 H 1.48496 * 109.47421 * 89.99973 * 12 10 8 14 14 H 1.48501 * 109.47028 * 210.00190 * 12 10 8 15 15 H 1.48501 * 109.46720 * 329.99606 * 12 10 8 16 16 C 1.34773 * 120.00147 * 276.10695 * 7 6 5 17 17 O 1.21296 * 119.99954 * 4.59640 * 16 7 6 18 18 C 1.50698 * 119.99905 * 184.59465 * 16 7 6 19 19 H 1.08993 * 109.47294 * 323.43548 * 18 16 7 20 20 C 1.53007 * 109.46946 * 83.44127 * 18 16 7 21 21 C 1.50703 * 109.47032 * 203.43737 * 18 16 7 22 22 C 1.38259 * 119.96329 * 299.73040 * 21 18 16 23 23 C 1.38217 * 120.07132 * 179.72759 * 22 21 18 24 24 C 1.38416 * 119.99564 * 0.54581 * 23 22 21 25 25 F 1.35098 * 120.03496 * 179.75527 * 24 23 22 26 26 C 1.38651 * 119.93163 * 359.72415 * 24 23 22 27 27 F 1.35093 * 120.03616 * 180.02562 * 26 24 23 28 28 C 1.38212 * 119.96667 * 120.00354 * 21 18 16 29 29 H 1.08998 * 109.46811 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47460 * 299.99893 * 1 2 3 31 31 H 1.08995 * 109.46829 * 60.00414 * 1 2 3 32 32 H 1.09005 * 109.47178 * 60.00468 * 5 3 2 33 33 H 1.08998 * 109.47399 * 300.00126 * 5 3 2 34 34 H 1.08994 * 109.47366 * 60.00130 * 6 5 3 35 35 H 1.08998 * 109.47089 * 300.00219 * 6 5 3 36 36 H 0.97008 * 119.99994 * 179.97438 * 11 10 8 37 37 H 1.08997 * 109.46833 * 301.07040 * 20 18 16 38 38 H 1.08996 * 109.47236 * 61.07648 * 20 18 16 39 39 H 1.09004 * 109.47082 * 181.07836 * 20 18 16 40 40 H 1.08000 * 119.96378 * 359.97438 * 22 21 18 41 41 H 1.07989 * 120.00399 * 180.27471 * 23 22 21 42 42 H 1.08001 * 119.99406 * 0.02562 * 28 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0001 2.7420 0.0011 7 7 5.4632 2.8187 0.0011 8 6 6.1410 2.9812 -1.1796 9 1 7.0383 2.4111 -1.3698 10 6 5.6736 3.8792 -2.1312 11 7 4.8148 4.8128 -1.7878 12 14 6.2657 3.7595 -3.8988 13 1 5.3630 2.8621 -4.6636 14 1 6.2595 5.1104 -4.5155 15 1 7.6455 3.2109 -3.9224 16 6 6.1427 2.7296 1.1615 17 8 5.5503 2.5026 2.1953 18 6 7.6385 2.9119 1.1746 19 1 8.0657 2.4755 0.2719 20 6 7.9699 4.4048 1.2257 21 6 8.2174 2.2272 2.3859 22 6 7.8263 2.6183 3.6531 23 6 8.3515 1.9881 4.7654 24 6 9.2786 0.9718 4.6117 25 9 9.7962 0.3586 5.6985 26 6 9.6751 0.5834 3.3411 27 9 10.5794 -0.4086 3.1886 28 6 9.1429 1.2128 2.2291 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 3.9564 0.7806 -0.8892 33 1 3.9557 0.7809 0.8908 34 1 3.6101 3.2359 0.8910 35 1 3.6107 3.2363 -0.8889 36 1 4.4887 5.4400 -2.4521 37 1 7.5350 4.9032 0.3594 38 1 7.5592 4.8372 2.1380 39 1 9.0518 4.5373 1.2158 40 1 7.1066 3.4145 3.7737 41 1 8.0419 2.2914 5.7545 42 1 9.4512 0.9115 1.2389 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261887436.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:34 Heat of formation + Delta-G solvation = -188.791672 kcal Electronic energy + Delta-G solvation = -29896.303836 eV Core-core repulsion = 25284.682589 eV Total energy + Delta-G solvation = -4611.621247 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.29846 -48.37858 -40.12709 -39.63929 -38.11551 -36.23350 -35.04608 -33.44802 -32.07450 -30.73487 -30.63129 -28.67765 -27.53145 -25.13677 -24.61551 -23.30551 -23.03088 -21.35353 -20.19258 -19.21558 -17.82221 -17.50662 -17.17693 -16.86763 -16.30045 -16.20146 -16.14693 -16.06363 -15.80768 -14.87309 -14.80909 -14.45100 -14.35843 -14.16821 -13.84288 -13.73010 -13.66042 -13.26108 -12.79691 -12.70358 -12.45915 -12.29030 -12.07954 -11.82901 -11.74386 -11.55270 -11.32688 -11.28532 -11.17012 -10.93288 -10.84110 -10.58624 -10.50735 -10.44293 -10.13849 -10.04814 -9.23666 -8.94666 -8.52908 -8.33391 -7.67099 -6.51377 -4.30125 1.13209 1.22109 2.61885 3.00110 3.03986 3.14673 3.15439 3.57165 3.72530 3.94922 4.01234 4.43237 4.58970 4.77987 4.82973 4.97911 5.20660 5.23298 5.26013 5.27400 5.37514 5.59356 5.69483 5.73680 5.78439 5.85127 5.90437 5.96006 6.05606 6.21760 6.22698 6.30194 6.36601 6.40390 6.67768 6.73171 6.78894 6.85520 6.97660 7.18712 7.30924 7.77364 8.12634 8.18897 8.92657 9.29960 9.73855 10.51271 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.009190 B = 0.003781 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3045.935093 B = 7404.251769 C = 9322.103635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.366 6.366 3 C 0.466 3.534 4 O -0.506 6.506 5 C -0.127 4.127 6 C 0.138 3.862 7 N -0.433 5.433 8 C -0.354 4.354 9 H 0.091 0.909 10 C 0.052 3.948 11 N -0.851 5.851 12 Si 0.911 3.089 13 H -0.276 1.276 14 H -0.283 1.283 15 H -0.267 1.267 16 C 0.483 3.517 17 O -0.596 6.596 18 C -0.057 4.057 19 H 0.102 0.898 20 C -0.128 4.128 21 C -0.038 4.038 22 C -0.057 4.057 23 C -0.132 4.132 24 C 0.054 3.946 25 F -0.137 7.137 26 C 0.057 3.943 27 F -0.136 7.136 28 C -0.123 4.123 29 H 0.095 0.905 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.063 0.937 35 H 0.106 0.894 36 H 0.272 0.728 37 H 0.082 0.918 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.145 0.855 41 H 0.141 0.859 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.681 -5.105 3.937 6.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.284 6.284 3 C 0.309 3.691 4 O -0.393 6.393 5 C -0.166 4.166 6 C 0.014 3.986 7 N -0.151 5.151 8 C -0.481 4.481 9 H 0.108 0.892 10 C -0.157 4.157 11 N -0.485 5.485 12 Si 0.737 3.263 13 H -0.202 1.202 14 H -0.208 1.208 15 H -0.192 1.192 16 C 0.272 3.728 17 O -0.481 6.481 18 C -0.078 4.078 19 H 0.120 0.880 20 C -0.186 4.186 21 C -0.039 4.039 22 C -0.075 4.075 23 C -0.151 4.151 24 C 0.034 3.966 25 F -0.116 7.116 26 C 0.037 3.963 27 F -0.114 7.114 28 C -0.142 4.142 29 H 0.114 0.886 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.122 0.878 33 H 0.119 0.881 34 H 0.082 0.918 35 H 0.124 0.876 36 H 0.083 0.917 37 H 0.101 0.899 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.162 0.838 41 H 0.159 0.841 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.078 -4.791 4.365 6.806 hybrid contribution 0.210 -0.374 -0.900 0.997 sum 2.288 -5.164 3.465 6.626 Atomic orbital electron populations 1.23168 0.77333 1.03058 1.02334 1.86543 1.22776 1.34415 1.84622 1.24086 0.92410 0.80890 0.71693 1.90651 1.67290 1.36231 1.45137 1.21932 0.85878 1.03415 1.05350 1.21046 0.82323 0.90624 1.04599 1.43286 1.04178 1.62388 1.05206 1.19348 1.11993 1.23270 0.93495 0.89195 1.25451 0.96468 0.93402 1.00329 1.69938 1.30121 1.13657 1.34772 0.86184 0.79517 0.77854 0.82696 1.20169 1.20837 1.19162 1.20243 0.88699 0.80278 0.83586 1.90549 1.70459 1.54470 1.32645 1.20058 0.94695 0.97678 0.95386 0.87981 1.21594 1.00691 0.92888 1.03385 1.19686 0.94249 0.94417 0.95511 1.21074 0.96712 0.99275 0.90487 1.21063 0.97047 0.95967 1.01006 1.17668 0.99791 0.97482 0.81662 1.91481 1.85643 1.81913 1.52549 1.17558 0.94333 0.91391 0.92980 1.91487 1.64758 1.58795 1.96400 1.20990 0.98423 0.96952 0.97850 0.88610 0.92161 0.92162 0.87839 0.88104 0.91832 0.87646 0.91730 0.89903 0.92890 0.92745 0.83778 0.84125 0.83869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.56 101.05 1.07 1.49 16 2 O -0.37 -5.85 10.57 -39.27 -0.41 -6.27 16 3 C 0.47 8.67 7.96 36.00 0.29 8.96 16 4 O -0.51 -10.68 15.73 -18.75 -0.29 -10.98 16 5 C -0.13 -2.40 6.09 -27.89 -0.17 -2.57 16 6 C 0.14 3.08 4.11 -4.04 -0.02 3.06 16 7 N -0.43 -9.61 2.50 -114.81 -0.29 -9.90 16 8 C -0.35 -7.83 8.09 -14.93 -0.12 -7.95 16 9 H 0.09 1.89 6.75 -52.49 -0.35 1.53 16 10 C 0.05 1.18 4.94 -17.47 -0.09 1.09 16 11 N -0.85 -20.86 11.72 55.50 0.65 -20.21 16 12 Si 0.91 17.84 29.59 -169.99 -5.03 12.81 16 13 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 14 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 15 H -0.27 -5.07 7.11 56.52 0.40 -4.66 16 16 C 0.48 10.21 6.68 -10.99 -0.07 10.14 16 17 O -0.60 -13.59 14.17 5.54 0.08 -13.51 16 18 C -0.06 -0.99 2.23 -92.92 -0.21 -1.20 16 19 H 0.10 1.71 6.26 -51.93 -0.33 1.38 16 20 C -0.13 -2.07 8.98 37.16 0.33 -1.74 16 21 C -0.04 -0.60 4.63 -104.62 -0.48 -1.08 16 22 C -0.06 -0.88 7.86 -39.58 -0.31 -1.19 16 23 C -0.13 -1.83 10.02 -39.52 -0.40 -2.23 16 24 C 0.05 0.80 7.31 -39.36 -0.29 0.51 16 25 F -0.14 -2.06 17.18 2.25 0.04 -2.02 16 26 C 0.06 0.86 7.31 -39.36 -0.29 0.58 16 27 F -0.14 -2.07 17.18 2.25 0.04 -2.03 16 28 C -0.12 -1.80 9.65 -39.53 -0.38 -2.19 16 29 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.72 8.13 -51.93 -0.42 0.29 16 31 H 0.06 0.72 8.13 -51.93 -0.42 0.29 16 32 H 0.10 1.84 8.14 -51.93 -0.42 1.41 16 33 H 0.10 1.90 7.99 -51.93 -0.42 1.48 16 34 H 0.06 1.53 7.64 -51.93 -0.40 1.13 16 35 H 0.11 2.58 5.84 -51.93 -0.30 2.27 16 36 H 0.27 6.41 8.31 -40.82 -0.34 6.07 16 37 H 0.08 1.53 7.84 -51.93 -0.41 1.12 16 38 H 0.05 0.84 7.33 -51.93 -0.38 0.46 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.14 2.27 6.92 -52.49 -0.36 1.91 16 41 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 42 H 0.14 1.83 7.94 -52.49 -0.42 1.41 16 LS Contribution 367.95 15.07 5.54 5.54 Total: -1.00 -27.34 367.95 -5.84 -33.19 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -5.03 Total: 7.68 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: -1.14 Total: 5.69 kcal Atomic # 7 Polarization: -30.48 SS G_CDS: 0.36 Total: -30.11 kcal Atomic # 8 Polarization: -30.12 SS G_CDS: -0.63 Total: -30.75 kcal Atomic # 9 Polarization: -4.13 SS G_CDS: 0.08 Total: -4.05 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -5.03 Total: 12.81 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -27.34 -5.84 -33.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261887436.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.606 kcal (2) G-P(sol) polarization free energy of solvation -27.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds