Wall clock time and date at job start Tue Mar 31 2020 23:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.47058 * 2 1 4 4 N 1.46499 * 109.47014 * 120.00332 * 2 1 3 5 5 C 1.34777 * 119.99665 * 275.27733 * 4 2 1 6 6 O 1.21703 * 120.00193 * 359.72118 * 5 4 2 7 7 C 1.46586 * 119.99782 * 179.72446 * 5 4 2 8 8 C 1.36647 * 125.45923 * 179.97438 * 7 5 4 9 9 C 1.37473 * 113.29745 * 180.02562 * 8 7 5 10 10 C 1.33816 * 115.10124 * 0.02562 * 9 8 7 11 11 S 1.70620 * 110.95482 * 359.72085 * 10 9 8 12 12 C 1.50696 * 109.46920 * 240.00333 * 2 1 3 13 13 O 1.21283 * 119.99709 * 240.00208 * 12 2 1 14 14 N 1.34773 * 120.00429 * 59.99960 * 12 2 1 15 15 C 1.46508 * 120.00331 * 179.97438 * 14 12 2 16 16 C 1.52997 * 109.46928 * 180.02562 * 15 14 12 17 17 H 1.09005 * 109.47439 * 60.00730 * 16 15 14 18 18 O 1.42896 * 109.47553 * 299.99830 * 16 15 14 19 19 C 1.53002 * 109.46665 * 180.02562 * 16 15 14 20 20 N 1.46500 * 109.47129 * 185.00284 * 19 16 15 21 21 C 1.36936 * 120.00100 * 180.02562 * 20 19 16 22 22 H 1.07995 * 120.00070 * 0.02562 * 21 20 19 23 23 C 1.38822 * 119.99687 * 179.97438 * 21 20 19 24 24 N 1.31609 * 120.00283 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99524 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47277 * 60.00277 * 25 23 21 27 27 H 1.48501 * 109.46916 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.47219 * 299.99968 * 25 23 21 29 29 H 1.09000 * 109.47169 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47066 * 300.00185 * 1 2 3 31 31 H 1.09005 * 109.46722 * 59.99817 * 1 2 3 32 32 H 0.97001 * 119.99790 * 94.99446 * 4 2 1 33 33 H 1.08000 * 123.34725 * 359.97438 * 8 7 5 34 34 H 1.07994 * 122.44962 * 180.02562 * 9 8 7 35 35 H 1.07996 * 124.52401 * 180.02562 * 10 9 8 36 36 H 0.96998 * 120.00119 * 0.02562 * 14 12 2 37 37 H 1.08997 * 109.46739 * 300.00223 * 15 14 12 38 38 H 1.08999 * 109.46782 * 60.00000 * 15 14 12 39 39 H 0.96695 * 114.00386 * 300.00924 * 18 16 15 40 40 H 1.09000 * 109.47221 * 305.00056 * 19 16 15 41 41 H 1.08997 * 109.47185 * 65.00443 * 19 16 15 42 42 H 0.97010 * 120.00033 * 359.97438 * 20 19 16 43 43 H 0.97000 * 120.00463 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1418 -0.0197 2.3585 6 8 1.8523 1.1612 2.4132 7 6 2.6246 -0.7122 3.5568 8 6 2.7922 -0.1433 4.7878 9 6 3.2597 -1.0235 5.7346 10 6 3.4690 -2.2704 5.2962 11 16 3.0754 -2.4097 3.6419 12 6 2.0324 -0.7103 -1.2305 13 8 2.7296 -1.6965 -1.1192 14 7 1.7068 -0.2499 -2.4546 15 6 2.1956 -0.9402 -3.6508 16 6 1.6860 -0.2185 -4.9000 17 1 2.0494 0.8092 -4.8996 18 8 0.2570 -0.2185 -4.9006 19 6 2.1959 -0.9398 -6.1492 20 7 1.8088 -0.1829 -7.3423 21 6 2.1575 -0.6390 -8.5855 22 1 2.7174 -1.5569 -8.6865 23 6 1.7902 0.0780 -9.7161 24 7 1.1074 1.1964 -9.5931 25 14 2.2652 -0.5446 -11.4120 26 1 1.6712 -1.8879 -11.6305 27 1 1.7584 0.3951 -12.4441 28 1 3.7442 -0.6356 -11.5096 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 2.2490 -1.6319 1.1525 33 1 2.5793 0.8949 4.9960 34 1 3.4446 -0.7302 6.7573 35 1 3.8333 -3.0816 5.9090 36 1 1.1494 0.5390 -2.5436 37 1 3.2855 -0.9397 -3.6506 38 1 1.8326 -1.9679 -3.6510 39 1 -0.1363 -1.1019 -4.9009 40 1 3.2822 -1.0184 -6.1054 41 1 1.7609 -1.9382 -6.1954 42 1 1.3049 0.6411 -7.2517 43 1 0.8511 1.6976 -10.3830 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268317063.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:05 Heat of formation + Delta-G solvation = -78.273731 kcal Electronic energy + Delta-G solvation = -26043.820735 eV Core-core repulsion = 22023.125044 eV Total energy + Delta-G solvation = -4020.695691 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.72872 -39.58775 -37.98753 -37.64948 -35.31207 -34.59518 -34.07106 -31.88840 -31.26322 -29.88429 -28.93216 -25.94661 -25.54953 -24.20616 -22.66236 -21.66379 -21.48037 -20.51491 -19.79506 -19.23210 -17.56043 -17.20941 -16.81039 -16.35623 -16.21765 -15.95265 -15.73792 -15.43410 -14.93813 -14.74261 -14.48499 -14.06279 -13.92312 -13.67250 -13.49455 -13.22505 -13.09407 -12.97809 -12.82975 -12.64285 -12.62295 -12.34902 -12.01781 -11.88281 -11.42781 -10.99564 -10.82561 -10.69140 -10.50801 -10.26395 -10.20950 -9.85439 -9.68636 -9.53263 -9.32693 -9.26357 -9.06350 -8.93051 -6.97519 -5.78892 -3.08887 0.04694 1.00640 1.41802 1.93959 2.30558 2.42228 2.80257 3.09046 3.42433 3.46791 3.47982 4.24165 4.41080 4.51066 4.53738 4.66155 4.67353 4.77048 4.80463 4.83978 5.00939 5.15539 5.22513 5.38416 5.48882 5.52255 5.55637 5.68432 5.69851 5.78214 5.84555 5.87432 5.89792 6.12272 6.23542 6.45947 6.61547 7.01395 7.23162 7.65182 7.71809 7.84729 7.92465 8.38975 9.50713 10.06698 10.42253 11.43276 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.034301 B = 0.001624 C = 0.001580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.100247 B =17242.162000 C =17717.165624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.126 3.874 3 H 0.119 0.881 4 N -0.709 5.709 5 C 0.596 3.404 6 O -0.528 6.528 7 C -0.269 4.269 8 C -0.053 4.053 9 C -0.152 4.152 10 C -0.230 4.230 11 S 0.211 5.789 12 C 0.510 3.490 13 O -0.540 6.540 14 N -0.712 5.712 15 C 0.089 3.911 16 C 0.088 3.912 17 H 0.106 0.894 18 O -0.552 6.552 19 C 0.128 3.872 20 N -0.725 5.725 21 C -0.247 4.247 22 H 0.070 0.930 23 C -0.011 4.011 24 N -0.930 5.930 25 Si 0.909 3.091 26 H -0.286 1.286 27 H -0.290 1.290 28 H -0.286 1.286 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.408 0.592 33 H 0.155 0.845 34 H 0.146 0.854 35 H 0.170 0.830 36 H 0.408 0.592 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.373 0.627 40 H 0.029 0.971 41 H 0.023 0.977 42 H 0.388 0.612 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.277 -6.210 32.050 32.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.018 3.982 3 H 0.137 0.863 4 N -0.363 5.363 5 C 0.382 3.618 6 O -0.406 6.406 7 C -0.390 4.390 8 C -0.087 4.087 9 C -0.183 4.183 10 C -0.368 4.368 11 S 0.478 5.522 12 C 0.294 3.706 13 O -0.418 6.418 14 N -0.363 5.363 15 C -0.035 4.035 16 C 0.029 3.971 17 H 0.124 0.876 18 O -0.357 6.357 19 C -0.001 4.001 20 N -0.370 5.370 21 C -0.378 4.378 22 H 0.087 0.913 23 C -0.207 4.207 24 N -0.577 5.577 25 Si 0.739 3.261 26 H -0.212 1.212 27 H -0.216 1.216 28 H -0.212 1.212 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.245 0.755 33 H 0.172 0.828 34 H 0.164 0.836 35 H 0.187 0.813 36 H 0.244 0.756 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.220 0.780 40 H 0.046 0.954 41 H 0.041 0.959 42 H 0.223 0.777 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.766 -6.735 30.936 31.710 hybrid contribution 0.024 0.311 0.126 0.337 sum 1.790 -6.424 31.062 31.770 Atomic orbital electron populations 1.22160 0.92256 1.03415 1.04103 1.20804 0.96055 0.98202 0.83143 0.86347 1.45594 1.67627 1.14675 1.08376 1.16893 0.77177 0.86040 0.81651 1.90845 1.50258 1.14796 1.84689 1.24569 1.16688 0.98882 0.98851 1.20825 0.96183 1.01511 0.90151 1.20069 1.04060 0.92495 1.01645 1.25401 1.08149 1.02389 1.00819 1.83261 1.58564 1.05539 1.04839 1.20487 0.80411 0.84798 0.84875 1.90708 1.38044 1.26391 1.86641 1.45832 1.53140 1.32322 1.05045 1.22164 1.00410 0.96868 0.84071 1.22413 0.81459 1.01061 0.92204 0.87601 1.86583 1.18574 1.33713 1.96821 1.21193 0.97569 0.94568 0.86794 1.42221 1.66861 1.27769 1.00170 1.19171 1.29327 1.05640 0.83622 0.91252 1.24760 1.00741 0.97331 0.97898 1.69657 1.43020 1.16375 1.28696 0.86252 0.78006 0.77728 0.84069 1.21238 1.21623 1.21233 0.91598 0.90607 0.90272 0.75514 0.82764 0.83589 0.81261 0.75578 0.90213 0.90813 0.77969 0.95380 0.95921 0.77713 0.93386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 9.38 37.16 0.35 -0.91 16 2 C 0.13 1.20 2.98 -69.08 -0.21 0.99 16 3 H 0.12 1.13 7.58 -51.93 -0.39 0.74 16 4 N -0.71 -7.02 4.95 -56.27 -0.28 -7.30 16 5 C 0.60 6.52 7.74 -12.89 -0.10 6.42 16 6 O -0.53 -7.15 16.51 5.19 0.09 -7.06 16 7 C -0.27 -2.43 6.45 -36.79 -0.24 -2.67 16 8 C -0.05 -0.42 10.01 -40.44 -0.40 -0.83 16 9 C -0.15 -0.91 10.15 -41.41 -0.42 -1.33 16 10 C -0.23 -1.27 10.92 29.18 0.32 -0.95 16 11 S 0.21 1.40 22.16 -107.50 -2.38 -0.98 16 12 C 0.51 5.70 7.22 -10.99 -0.08 5.62 16 13 O -0.54 -7.66 15.84 5.55 0.09 -7.57 16 14 N -0.71 -7.34 5.34 -60.29 -0.32 -7.66 16 15 C 0.09 1.06 5.34 -4.04 -0.02 1.04 16 16 C 0.09 1.27 3.09 -26.73 -0.08 1.18 16 17 H 0.11 1.59 8.14 -51.93 -0.42 1.17 16 18 O -0.55 -8.05 13.03 -35.23 -0.46 -8.51 16 19 C 0.13 2.37 5.90 -4.04 -0.02 2.35 16 20 N -0.73 -17.98 5.55 -59.91 -0.33 -18.31 16 21 C -0.25 -6.84 9.99 -15.06 -0.15 -6.99 16 22 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 23 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 24 N -0.93 -28.06 13.06 55.49 0.72 -27.33 16 25 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 28 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.52 7.57 -51.93 -0.39 0.13 16 32 H 0.41 3.84 6.90 -40.82 -0.28 3.56 16 33 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.15 0.55 8.06 -52.49 -0.42 0.13 16 35 H 0.17 0.52 8.06 -52.49 -0.42 0.10 16 36 H 0.41 3.63 7.77 -40.82 -0.32 3.31 16 37 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.37 4.45 9.04 45.56 0.41 4.86 16 40 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.39 10.32 7.67 -40.82 -0.31 10.01 16 43 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 385.80 15.07 5.81 5.81 Total: -1.00 -34.81 385.80 -8.30 -43.11 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: -5.06 Total: 15.06 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -1.15 Total: 3.51 kcal Atomic # 7 Polarization: -60.39 SS G_CDS: -0.21 Total: -60.60 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -0.29 Total: -23.15 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Atomic # 16 Polarization: 1.40 SS G_CDS: -2.38 Total: -0.98 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.81 -8.30 -43.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268317063.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.160 kcal (2) G-P(sol) polarization free energy of solvation -34.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds