Wall clock time and date at job start Tue Mar 31 2020 23:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46698 * 2 1 4 4 N 1.46500 * 109.47317 * 240.00048 * 2 1 3 5 5 C 1.34773 * 120.00050 * 85.00003 * 4 2 1 6 6 O 1.21699 * 119.99929 * 359.97438 * 5 4 2 7 7 C 1.46586 * 120.00056 * 180.02562 * 5 4 2 8 8 C 1.36649 * 125.45919 * 180.02562 * 7 5 4 9 9 C 1.37464 * 113.29643 * 179.97438 * 8 7 5 10 10 C 1.33821 * 115.10445 * 0.02562 * 9 8 7 11 11 S 1.70622 * 110.95026 * 359.76163 * 10 9 8 12 12 C 1.50696 * 109.46999 * 119.99757 * 2 1 3 13 13 O 1.21284 * 120.00109 * 120.00318 * 12 2 1 14 14 N 1.34777 * 120.00137 * 300.00533 * 12 2 1 15 15 C 1.46506 * 119.99873 * 180.02562 * 14 12 2 16 16 C 1.53002 * 109.47035 * 179.97438 * 15 14 12 17 17 H 1.09005 * 109.46847 * 304.99833 * 16 15 14 18 18 O 1.42903 * 109.47256 * 64.99491 * 16 15 14 19 19 C 1.52999 * 109.46954 * 184.99888 * 16 15 14 20 20 N 1.46500 * 109.46991 * 179.97438 * 19 16 15 21 21 C 1.36928 * 120.00216 * 179.97438 * 20 19 16 22 22 H 1.08003 * 119.99842 * 0.02562 * 21 20 19 23 23 C 1.38815 * 120.00246 * 179.97438 * 21 20 19 24 24 N 1.31623 * 120.00185 * 179.97438 * 23 21 20 25 25 Si 1.86799 * 119.99845 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.47286 * 89.99782 * 25 23 21 27 27 H 1.48500 * 109.46973 * 209.99881 * 25 23 21 28 28 H 1.48496 * 109.47127 * 329.99652 * 25 23 21 29 29 H 1.09002 * 109.46838 * 60.00504 * 1 2 3 30 30 H 1.09004 * 109.47006 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47513 * 299.99609 * 1 2 3 32 32 H 0.97002 * 120.00030 * 264.99904 * 4 2 1 33 33 H 1.08000 * 123.34894 * 359.93886 * 8 7 5 34 34 H 1.08004 * 122.44972 * 180.02562 * 9 8 7 35 35 H 1.07994 * 124.52452 * 179.97438 * 10 9 8 36 36 H 0.96999 * 120.00047 * 359.97438 * 14 12 2 37 37 H 1.09004 * 109.47073 * 299.99562 * 15 14 12 38 38 H 1.09000 * 109.47212 * 59.99645 * 15 14 12 39 39 H 0.96702 * 113.99511 * 60.00086 * 18 16 15 40 40 H 1.08996 * 109.46904 * 299.99229 * 19 16 15 41 41 H 1.08995 * 109.47393 * 60.00173 * 19 16 15 42 42 H 0.97010 * 119.99975 * 359.97438 * 20 19 16 43 43 H 0.96997 * 119.99847 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1471 -0.0183 -2.3571 6 8 1.8572 1.1624 -2.4119 7 6 2.6353 -0.7094 -3.5541 8 6 2.8085 -0.1389 -4.7836 9 6 3.2801 -1.0180 -5.7293 10 6 3.4862 -2.2658 -5.2919 11 16 3.0976 -2.4038 -3.6362 12 6 2.0323 -0.7103 1.2305 13 8 2.7296 -1.6964 1.1193 14 7 1.7066 -0.2499 2.4546 15 6 2.1954 -0.9402 3.6508 16 6 1.6858 -0.2187 4.9000 17 1 1.9741 0.8316 4.8560 18 8 0.2616 -0.3196 4.9607 19 6 2.2963 -0.8634 6.1460 20 7 1.8087 -0.1722 7.3422 21 6 2.2219 -0.5772 8.5832 22 1 2.9075 -1.4060 8.6803 23 6 1.7603 0.0781 9.7166 24 7 2.1571 -0.3116 10.9095 25 14 0.5750 1.5121 9.5487 26 1 -0.8209 1.0063 9.5757 27 1 0.7805 2.4585 10.6744 28 1 0.8232 2.2115 8.2624 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8899 32 1 2.2491 -1.6318 -1.1526 33 1 2.5955 0.8992 -4.9918 34 1 3.4705 -0.7233 -6.7508 35 1 3.8530 -3.0763 -5.9041 36 1 1.1492 0.5389 2.5435 37 1 1.8325 -1.9681 3.6509 38 1 3.2854 -0.9398 3.6506 39 1 -0.0669 -1.2282 5.0019 40 1 2.0079 -1.9136 6.1900 41 1 3.3825 -0.7864 6.0998 42 1 1.1932 0.5726 7.2550 43 1 1.8342 0.1461 11.7015 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268317075.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:07 Heat of formation + Delta-G solvation = -74.563714 kcal Electronic energy + Delta-G solvation = -26120.549832 eV Core-core repulsion = 22100.015019 eV Total energy + Delta-G solvation = -4020.534813 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.78428 -39.64408 -38.06154 -37.75714 -35.36514 -34.72260 -34.21494 -31.94875 -31.44134 -29.98876 -29.24447 -26.11342 -25.66086 -24.23918 -22.41222 -21.74725 -21.49202 -20.57871 -19.84943 -19.27175 -17.78310 -17.60150 -16.86984 -16.38501 -16.32140 -16.01566 -15.78133 -15.48437 -15.00499 -14.84584 -14.53549 -14.10846 -13.90122 -13.79349 -13.54063 -13.30321 -13.24837 -13.10170 -12.87023 -12.67116 -12.63987 -12.42169 -12.12236 -11.99092 -11.45270 -11.33788 -10.90397 -10.87469 -10.54887 -10.32855 -10.19583 -9.85636 -9.67852 -9.58328 -9.37257 -9.32748 -9.08827 -8.96374 -7.29575 -5.80778 -3.17329 0.01954 0.98101 1.39303 1.91194 2.24131 2.36845 2.76672 3.02440 3.37378 3.41992 3.44858 4.18033 4.36325 4.46288 4.51147 4.57024 4.60788 4.63113 4.71342 4.81292 4.98438 5.04803 5.16067 5.32927 5.37720 5.46073 5.47446 5.58089 5.67265 5.72271 5.73098 5.77153 5.81916 5.84641 6.11060 6.36366 6.48927 6.97130 7.14675 7.67470 7.70296 7.83936 7.94698 8.37585 9.17011 9.88866 10.08307 11.37147 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.032569 B = 0.001715 C = 0.001662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.505913 B =16322.982760 C =16840.807197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.126 3.874 3 H 0.119 0.881 4 N -0.709 5.709 5 C 0.596 3.404 6 O -0.528 6.528 7 C -0.270 4.270 8 C -0.053 4.053 9 C -0.152 4.152 10 C -0.229 4.229 11 S 0.211 5.789 12 C 0.510 3.490 13 O -0.538 6.538 14 N -0.713 5.713 15 C 0.090 3.910 16 C 0.085 3.915 17 H 0.105 0.895 18 O -0.556 6.556 19 C 0.131 3.869 20 N -0.749 5.749 21 C -0.250 4.250 22 H 0.090 0.910 23 C 0.006 3.994 24 N -0.932 5.932 25 Si 0.888 3.112 26 H -0.283 1.283 27 H -0.291 1.291 28 H -0.277 1.277 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.408 0.592 33 H 0.155 0.845 34 H 0.147 0.853 35 H 0.170 0.830 36 H 0.407 0.593 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.377 0.623 40 H 0.032 0.968 41 H 0.037 0.963 42 H 0.366 0.634 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.956 -3.029 -35.247 35.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.018 3.982 3 H 0.136 0.864 4 N -0.363 5.363 5 C 0.383 3.617 6 O -0.406 6.406 7 C -0.391 4.391 8 C -0.086 4.086 9 C -0.183 4.183 10 C -0.367 4.367 11 S 0.479 5.521 12 C 0.295 3.705 13 O -0.415 6.415 14 N -0.365 5.365 15 C -0.034 4.034 16 C 0.025 3.975 17 H 0.123 0.877 18 O -0.361 6.361 19 C 0.003 3.997 20 N -0.395 5.395 21 C -0.380 4.380 22 H 0.107 0.893 23 C -0.190 4.190 24 N -0.580 5.580 25 Si 0.719 3.281 26 H -0.210 1.210 27 H -0.218 1.218 28 H -0.203 1.203 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.245 0.755 33 H 0.172 0.828 34 H 0.164 0.836 35 H 0.188 0.812 36 H 0.243 0.757 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.224 0.776 40 H 0.050 0.950 41 H 0.055 0.945 42 H 0.200 0.800 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.444 -3.596 -34.110 34.302 hybrid contribution -0.839 1.385 -1.012 1.909 sum -1.283 -2.212 -35.122 35.215 Atomic orbital electron populations 1.22157 0.92266 1.03448 1.04052 1.20797 0.96047 0.98194 0.83158 0.86363 1.45594 1.67619 1.14637 1.08452 1.16892 0.77160 0.86017 0.81643 1.90843 1.50337 1.14826 1.84617 1.24562 1.16642 0.98998 0.98888 1.20823 0.96119 1.01491 0.90198 1.20072 1.04083 0.92449 1.01683 1.25408 1.08140 1.02382 1.00778 1.83264 1.58400 1.05762 1.04708 1.20494 0.80400 0.84804 0.84851 1.90716 1.37909 1.26307 1.86611 1.45839 1.53242 1.32314 1.05107 1.22150 1.00530 0.96908 0.83847 1.22456 0.81470 1.01026 0.92577 0.87699 1.86550 1.19998 1.32947 1.96642 1.21161 0.97315 0.95519 0.85740 1.42551 1.56258 1.38856 1.01870 1.19037 1.23303 1.13865 0.81747 0.89263 1.24677 1.00025 0.99237 0.95038 1.69708 1.48016 1.43311 0.96945 0.86491 0.81670 0.83137 0.76849 1.20999 1.21786 1.20295 0.90581 0.91558 0.90368 0.75486 0.82771 0.83572 0.81237 0.75716 0.90598 0.90022 0.77574 0.95003 0.94491 0.80005 0.92987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 9.38 37.16 0.35 -0.83 16 2 C 0.13 1.14 2.98 -69.08 -0.21 0.93 16 3 H 0.12 1.07 7.58 -51.93 -0.39 0.67 16 4 N -0.71 -6.75 4.95 -56.28 -0.28 -7.03 16 5 C 0.60 6.33 7.75 -12.90 -0.10 6.23 16 6 O -0.53 -6.97 16.50 5.19 0.09 -6.89 16 7 C -0.27 -2.37 6.45 -36.79 -0.24 -2.61 16 8 C -0.05 -0.40 10.01 -40.44 -0.40 -0.81 16 9 C -0.15 -0.88 10.15 -41.41 -0.42 -1.30 16 10 C -0.23 -1.22 10.92 29.18 0.32 -0.90 16 11 S 0.21 1.36 22.16 -107.50 -2.38 -1.02 16 12 C 0.51 5.40 7.22 -10.99 -0.08 5.33 16 13 O -0.54 -7.36 15.84 5.55 0.09 -7.27 16 14 N -0.71 -6.80 5.40 -60.29 -0.33 -7.12 16 15 C 0.09 0.99 5.31 -4.04 -0.02 0.97 16 16 C 0.08 1.11 3.09 -26.73 -0.08 1.02 16 17 H 0.11 1.39 8.14 -51.93 -0.42 0.97 16 18 O -0.56 -7.38 13.03 -35.23 -0.46 -7.84 16 19 C 0.13 2.30 5.92 -4.04 -0.02 2.27 16 20 N -0.75 -17.27 5.30 -59.91 -0.32 -17.58 16 21 C -0.25 -7.00 10.47 -15.06 -0.16 -7.16 16 22 H 0.09 2.67 8.06 -52.48 -0.42 2.25 16 23 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 24 N -0.93 -29.13 13.97 55.49 0.78 -28.36 16 25 Si 0.89 22.16 27.74 -169.99 -4.71 17.44 16 26 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 27 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 28 H -0.28 -6.54 6.52 56.52 0.37 -6.17 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.47 7.56 -51.93 -0.39 0.08 16 32 H 0.41 3.70 6.90 -40.82 -0.28 3.42 16 33 H 0.15 1.11 8.06 -52.49 -0.42 0.68 16 34 H 0.15 0.53 8.06 -52.48 -0.42 0.11 16 35 H 0.17 0.50 8.06 -52.49 -0.42 0.07 16 36 H 0.41 3.23 7.89 -40.82 -0.32 2.91 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.38 4.06 9.05 45.56 0.41 4.47 16 40 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.37 8.43 5.41 -40.82 -0.22 8.21 16 43 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 382.69 15.07 5.77 5.77 Total: -1.00 -35.72 382.69 -7.94 -43.66 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -5.02 Total: 13.02 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -1.16 Total: 3.22 kcal Atomic # 7 Polarization: -59.95 SS G_CDS: -0.15 Total: -60.10 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: -0.29 Total: -22.00 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.71 Total: 17.44 kcal Atomic # 16 Polarization: 1.36 SS G_CDS: -2.38 Total: -1.02 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.72 -7.94 -43.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268317075.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.899 kcal (2) G-P(sol) polarization free energy of solvation -35.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds