Wall clock time and date at job start Tue Mar 31 2020 23:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.46921 * 2 1 4 4 N 1.46505 * 109.47140 * 120.00032 * 2 1 3 5 5 C 1.34780 * 119.99629 * 274.99912 * 4 2 1 6 6 O 1.21695 * 120.00228 * 0.02562 * 5 4 2 7 7 C 1.46583 * 119.99462 * 180.02562 * 5 4 2 8 8 C 1.36653 * 125.45629 * 180.02562 * 7 5 4 9 9 C 1.37472 * 113.29561 * 179.97438 * 8 7 5 10 10 C 1.33814 * 115.10137 * 0.02562 * 9 8 7 11 11 S 1.70622 * 110.95648 * 359.71990 * 10 9 8 12 12 C 1.50702 * 109.46945 * 239.99761 * 2 1 3 13 13 O 1.21281 * 120.00051 * 239.99842 * 12 2 1 14 14 N 1.34779 * 119.99840 * 60.00163 * 12 2 1 15 15 C 1.46494 * 119.99921 * 179.97438 * 14 12 2 16 16 C 1.53003 * 109.47283 * 179.97438 * 15 14 12 17 17 H 1.08999 * 109.47269 * 305.00317 * 16 15 14 18 18 O 1.42903 * 109.46459 * 65.00211 * 16 15 14 19 19 C 1.53001 * 109.47376 * 185.00021 * 16 15 14 20 20 N 1.46497 * 109.46900 * 180.02562 * 19 16 15 21 21 C 1.36940 * 119.99699 * 180.02562 * 20 19 16 22 22 H 1.08003 * 120.00008 * 0.02562 * 21 20 19 23 23 C 1.38812 * 119.99902 * 179.97438 * 21 20 19 24 24 N 1.31618 * 120.00041 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99798 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47427 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.47212 * 120.00446 * 25 23 21 28 28 H 1.48501 * 109.46932 * 239.99751 * 25 23 21 29 29 H 1.09005 * 109.47206 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46886 * 299.99878 * 1 2 3 31 31 H 1.08999 * 109.47534 * 60.00018 * 1 2 3 32 32 H 0.96998 * 119.99947 * 94.99815 * 4 2 1 33 33 H 1.07997 * 123.34951 * 359.97438 * 8 7 5 34 34 H 1.07997 * 122.44746 * 180.02562 * 9 8 7 35 35 H 1.08003 * 124.51828 * 180.02562 * 10 9 8 36 36 H 0.96999 * 119.99691 * 0.02562 * 14 12 2 37 37 H 1.09005 * 109.47040 * 60.00167 * 15 14 12 38 38 H 1.08999 * 109.47079 * 299.99869 * 15 14 12 39 39 H 0.96700 * 114.00311 * 60.00313 * 18 16 15 40 40 H 1.08999 * 109.47164 * 300.00361 * 19 16 15 41 41 H 1.08997 * 109.47124 * 60.00063 * 19 16 15 42 42 H 0.96996 * 120.00310 * 359.97438 * 20 19 16 43 43 H 0.97001 * 119.99921 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3572 6 8 1.8572 1.1625 2.4119 7 6 2.6362 -0.7091 3.5538 8 6 2.8086 -0.1388 4.7836 9 6 3.2805 -1.0179 5.7293 10 6 3.4885 -2.2651 5.2913 11 16 3.0882 -2.4062 3.6387 12 6 2.0323 -0.7105 -1.2305 13 8 2.7296 -1.6965 -1.1192 14 7 1.7067 -0.2500 -2.4546 15 6 2.1954 -0.9403 -3.6507 16 6 1.6848 -0.2195 -4.9000 17 1 0.5984 -0.1420 -4.8563 18 8 2.2537 1.0900 -4.9602 19 6 2.0900 -1.0095 -6.1461 20 7 1.6016 -0.3189 -7.3422 21 6 1.8458 -0.8436 -8.5833 22 1 2.3981 -1.7666 -8.6803 23 6 1.3826 -0.1895 -9.7167 24 7 0.7082 0.9345 -9.5984 25 14 1.7151 -0.9056 -11.4096 26 1 2.4861 -2.1671 -11.2709 27 1 0.4255 -1.1865 -12.0904 28 1 2.4975 0.0674 -12.2136 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5138 -0.8900 32 1 2.2490 -1.6318 1.1526 33 1 2.5953 0.8992 4.9919 34 1 3.4695 -0.7235 6.7510 35 1 3.8558 -3.0755 5.9035 36 1 1.1493 0.5389 -2.5435 37 1 1.8324 -1.9681 -3.6508 38 1 3.2854 -0.9399 -3.6506 39 1 3.2198 1.0976 -5.0012 40 1 3.1764 -1.0869 -6.1898 41 1 1.6561 -2.0083 -6.1001 42 1 1.1046 0.5095 -7.2551 43 1 0.3841 1.3913 -10.3904 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268317079.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:13 Heat of formation + Delta-G solvation = -78.379130 kcal Electronic energy + Delta-G solvation = -26035.329640 eV Core-core repulsion = 22014.629378 eV Total energy + Delta-G solvation = -4020.700262 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.73074 -39.58828 -37.98438 -37.64386 -35.31551 -34.61117 -34.05451 -31.88910 -31.25584 -29.88602 -28.93799 -25.94898 -25.55230 -24.20886 -22.67503 -21.67831 -21.46145 -20.51579 -19.79344 -19.23165 -17.56070 -17.20356 -16.83152 -16.36009 -16.16498 -15.96669 -15.72567 -15.47210 -15.00636 -14.63930 -14.50272 -14.06059 -13.87569 -13.77176 -13.47676 -13.22610 -13.05828 -13.02223 -12.83099 -12.63449 -12.59061 -12.39729 -12.00368 -11.89169 -11.42835 -10.98887 -10.86160 -10.68756 -10.50967 -10.25371 -10.15490 -9.85689 -9.69186 -9.51963 -9.32395 -9.27230 -9.06442 -8.94216 -6.97361 -5.79326 -3.09255 0.04594 1.00574 1.41734 1.93848 2.30515 2.41873 2.80229 3.08796 3.41314 3.46907 3.49263 4.24221 4.41138 4.50176 4.53657 4.64646 4.67901 4.76957 4.80755 4.83912 5.00851 5.16472 5.20780 5.37597 5.48680 5.51704 5.54548 5.67774 5.69773 5.76710 5.84468 5.87635 5.89323 6.12525 6.23460 6.45488 6.61762 7.01239 7.22434 7.65936 7.71664 7.86433 7.92636 8.38721 9.50649 10.06795 10.42560 11.42947 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.035154 B = 0.001623 C = 0.001578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.296894 B =17247.073882 C =17742.785465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.126 3.874 3 H 0.119 0.881 4 N -0.709 5.709 5 C 0.596 3.404 6 O -0.528 6.528 7 C -0.270 4.270 8 C -0.053 4.053 9 C -0.152 4.152 10 C -0.230 4.230 11 S 0.211 5.789 12 C 0.510 3.490 13 O -0.540 6.540 14 N -0.712 5.712 15 C 0.089 3.911 16 C 0.089 3.911 17 H 0.105 0.895 18 O -0.552 6.552 19 C 0.127 3.873 20 N -0.725 5.725 21 C -0.245 4.245 22 H 0.071 0.929 23 C -0.012 4.012 24 N -0.929 5.929 25 Si 0.908 3.092 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.291 1.291 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.408 0.592 33 H 0.155 0.845 34 H 0.146 0.854 35 H 0.170 0.830 36 H 0.408 0.592 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.374 0.626 40 H 0.023 0.977 41 H 0.029 0.971 42 H 0.389 0.611 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.992 -5.164 32.092 32.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.018 3.982 3 H 0.137 0.863 4 N -0.363 5.363 5 C 0.382 3.618 6 O -0.406 6.406 7 C -0.390 4.390 8 C -0.087 4.087 9 C -0.183 4.183 10 C -0.368 4.368 11 S 0.478 5.522 12 C 0.294 3.706 13 O -0.418 6.418 14 N -0.364 5.364 15 C -0.035 4.035 16 C 0.029 3.971 17 H 0.123 0.877 18 O -0.357 6.357 19 C -0.002 4.002 20 N -0.370 5.370 21 C -0.376 4.376 22 H 0.089 0.911 23 C -0.208 4.208 24 N -0.577 5.577 25 Si 0.739 3.261 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.218 1.218 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.245 0.755 33 H 0.172 0.828 34 H 0.164 0.836 35 H 0.187 0.813 36 H 0.244 0.756 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.221 0.779 40 H 0.041 0.959 41 H 0.046 0.954 42 H 0.224 0.776 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.750 -6.186 31.011 31.742 hybrid contribution 0.510 0.660 0.105 0.841 sum 3.260 -5.526 31.116 31.771 Atomic orbital electron populations 1.22162 0.92321 1.03422 1.04065 1.20802 0.96021 0.98235 0.83145 0.86299 1.45597 1.67600 1.14622 1.08462 1.16891 0.77193 0.86028 0.81647 1.90843 1.50317 1.14810 1.84600 1.24570 1.16638 0.98891 0.98903 1.20826 0.96171 1.01511 0.90161 1.20070 1.04047 0.92503 1.01652 1.25403 1.08140 1.02382 1.00835 1.83263 1.58406 1.05548 1.04970 1.20491 0.80434 0.84764 0.84877 1.90707 1.38038 1.26383 1.86638 1.45848 1.53267 1.32156 1.05083 1.22178 1.00055 0.97195 0.84060 1.22397 0.99028 0.83493 0.92207 0.87697 1.86583 1.25430 1.27054 1.96590 1.21187 0.97190 0.94990 0.86832 1.42228 1.66578 1.28114 1.00120 1.19264 1.29471 1.05236 0.83624 0.91149 1.24763 1.00769 0.97375 0.97901 1.69687 1.41886 1.17787 1.28338 0.86111 0.77384 0.78077 0.84549 1.20550 1.21814 1.21802 0.91554 0.90559 0.90395 0.75511 0.82764 0.83589 0.81259 0.75644 0.90183 0.90836 0.77855 0.95943 0.95376 0.77629 0.93498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 9.38 37.16 0.35 -0.91 16 2 C 0.13 1.20 2.98 -69.08 -0.21 0.99 16 3 H 0.12 1.14 7.58 -51.93 -0.39 0.75 16 4 N -0.71 -7.01 4.95 -56.27 -0.28 -7.29 16 5 C 0.60 6.51 7.75 -12.89 -0.10 6.41 16 6 O -0.53 -7.14 16.50 5.19 0.09 -7.06 16 7 C -0.27 -2.43 6.45 -36.79 -0.24 -2.67 16 8 C -0.05 -0.42 10.01 -40.43 -0.40 -0.82 16 9 C -0.15 -0.91 10.15 -41.41 -0.42 -1.33 16 10 C -0.23 -1.27 10.92 29.18 0.32 -0.95 16 11 S 0.21 1.40 22.16 -107.50 -2.38 -0.98 16 12 C 0.51 5.70 7.22 -10.98 -0.08 5.62 16 13 O -0.54 -7.65 15.84 5.56 0.09 -7.56 16 14 N -0.71 -7.34 5.40 -60.29 -0.33 -7.66 16 15 C 0.09 1.06 5.31 -4.04 -0.02 1.04 16 16 C 0.09 1.27 3.09 -26.73 -0.08 1.19 16 17 H 0.11 1.53 8.14 -51.93 -0.42 1.11 16 18 O -0.55 -8.32 13.03 -35.23 -0.46 -8.78 16 19 C 0.13 2.36 5.92 -4.04 -0.02 2.33 16 20 N -0.73 -17.95 5.49 -59.91 -0.33 -18.28 16 21 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 22 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 23 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 24 N -0.93 -28.05 13.06 55.49 0.72 -27.32 16 25 Si 0.91 22.25 29.55 -169.99 -5.02 17.22 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 28 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.50 7.56 -51.93 -0.39 0.10 16 32 H 0.41 3.84 6.90 -40.82 -0.28 3.56 16 33 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.15 0.55 8.06 -52.49 -0.42 0.13 16 35 H 0.17 0.52 8.06 -52.48 -0.42 0.10 16 36 H 0.41 3.60 7.89 -40.82 -0.32 3.28 16 37 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.37 4.73 9.05 45.56 0.41 5.15 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.39 10.34 7.54 -40.82 -0.31 10.03 16 43 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 385.80 15.07 5.81 5.81 Total: -1.00 -34.92 385.80 -8.30 -43.22 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -5.06 Total: 15.15 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: -1.15 Total: 3.53 kcal Atomic # 7 Polarization: -60.35 SS G_CDS: -0.21 Total: -60.56 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -0.29 Total: -23.40 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Atomic # 16 Polarization: 1.40 SS G_CDS: -2.38 Total: -0.98 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.92 -8.30 -43.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268317079.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.161 kcal (2) G-P(sol) polarization free energy of solvation -34.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds