Wall clock time and date at job start Tue Mar 31 2020 23:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35784 * 117.00158 * 2 1 4 4 C 1.38022 * 123.47150 * 0.20305 * 3 2 1 5 5 C 1.33616 * 115.08703 * 180.27093 * 4 3 2 6 6 S 1.70571 * 111.14440 * 359.74630 * 5 4 3 7 7 C 1.37271 * 123.47248 * 179.97438 * 3 2 1 8 8 C 1.41722 * 125.47412 * 0.02904 * 7 3 2 9 9 O 1.21772 * 120.00260 * 359.71483 * 8 7 3 10 10 N 1.34783 * 119.99796 * 179.70767 * 8 7 3 11 11 C 1.46500 * 119.99492 * 180.02562 * 10 8 7 12 12 H 1.08995 * 109.47158 * 324.99952 * 11 10 8 13 13 C 1.52993 * 109.47187 * 85.00558 * 11 10 8 14 14 C 1.53006 * 109.46616 * 205.00467 * 11 10 8 15 15 N 1.46898 * 109.47138 * 55.00041 * 14 11 10 16 16 C 1.46906 * 110.99888 * 180.02562 * 15 14 11 17 17 C 1.50699 * 109.47140 * 179.97438 * 16 15 14 18 18 O 1.21289 * 119.99678 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99614 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99518 * 180.02562 * 19 17 16 21 21 H 1.08003 * 120.00058 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00085 * 179.97438 * 20 19 17 23 23 N 1.31416 * 119.99807 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00409 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46949 * 60.00154 * 24 22 20 26 26 H 1.48496 * 109.47431 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47561 * 300.00356 * 24 22 20 28 28 H 1.09001 * 109.47035 * 300.00425 * 1 2 3 29 29 H 1.08999 * 109.46998 * 60.00067 * 1 2 3 30 30 H 1.09000 * 109.47204 * 180.02562 * 1 2 3 31 31 H 1.08005 * 122.45637 * 0.02562 * 4 3 2 32 32 H 1.07997 * 124.42773 * 179.74321 * 5 4 3 33 33 H 0.96993 * 119.99811 * 0.02562 * 10 8 7 34 34 H 1.09002 * 109.47076 * 179.97438 * 13 11 10 35 35 H 1.09000 * 109.47314 * 299.99331 * 13 11 10 36 36 H 1.09004 * 109.47456 * 59.99384 * 13 11 10 37 37 H 1.08997 * 109.46770 * 294.99988 * 14 11 10 38 38 H 1.08995 * 109.47019 * 175.00201 * 14 11 10 39 39 H 1.00904 * 110.99913 * 303.95145 * 15 14 11 40 40 H 1.09004 * 109.47040 * 299.99934 * 16 15 14 41 41 H 1.09000 * 109.47033 * 59.99886 * 16 15 14 42 42 H 0.96996 * 120.00269 * 359.97438 * 19 17 16 43 43 H 0.97002 * 120.00022 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2098 0.0000 4 6 1.3653 2.4108 0.0041 5 6 2.1390 3.5001 -0.0023 6 16 3.7923 3.0805 -0.0070 7 6 3.4094 1.3645 0.0005 8 6 4.3567 0.3104 0.0005 9 8 3.9794 -0.8473 0.0053 10 7 5.6754 0.5894 -0.0049 11 6 6.6545 -0.5003 -0.0055 12 1 6.2733 -1.3316 0.5875 13 6 6.8969 -0.9674 -1.4420 14 6 7.9699 -0.0041 0.5983 15 7 7.7161 0.5547 1.9330 16 6 8.9595 1.0428 2.5445 17 6 8.6600 1.6079 3.9090 18 8 7.5228 1.6040 4.3307 19 7 9.6559 2.1177 4.6606 20 6 9.3835 2.6314 5.9022 21 1 8.3709 2.6279 6.2778 22 6 10.4102 3.1564 6.6774 23 7 11.6424 3.1602 6.2206 24 14 10.0391 3.8570 8.3687 25 1 9.4492 2.7968 9.2251 26 1 11.2960 4.3498 8.9871 27 1 9.0769 4.9806 8.2390 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.2866 2.4660 0.0080 32 1 1.7663 4.5137 -0.0043 33 1 5.9759 1.5116 -0.0084 34 1 7.6258 -1.7779 -1.4425 35 1 5.9598 -1.3209 -1.8722 36 1 7.2781 -0.1360 -2.0351 37 1 8.3962 0.7670 -0.0434 38 1 8.6691 -0.8363 0.6798 39 1 7.0220 1.2859 1.8928 40 1 9.6658 0.2180 2.6394 41 1 9.3922 1.8213 1.9161 42 1 10.5653 2.1204 4.3234 43 1 12.3591 3.5270 6.7615 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275417188.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:04 Heat of formation + Delta-G solvation = -68.699267 kcal Electronic energy + Delta-G solvation = -26764.931759 eV Core-core repulsion = 22744.651248 eV Total energy + Delta-G solvation = -4020.280511 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.47840 -39.35323 -38.25131 -36.63908 -36.11972 -34.19626 -33.58078 -31.63396 -31.17722 -29.90000 -27.55438 -27.24776 -25.17988 -24.87564 -23.26039 -22.22674 -20.61610 -19.86095 -19.33950 -18.90184 -17.86049 -17.18721 -16.50004 -16.15915 -16.06428 -15.76619 -15.29790 -15.09802 -14.85256 -14.47173 -14.33381 -14.14835 -13.84256 -13.71026 -13.51722 -13.06285 -13.00046 -12.86609 -12.56795 -12.33118 -11.88987 -11.85733 -11.64361 -11.57959 -11.43726 -11.37496 -11.25977 -11.02490 -10.90288 -10.43171 -10.19859 -9.86864 -9.48454 -9.18559 -8.95289 -8.43950 -8.31152 -8.04877 -7.94198 -6.40237 -3.80910 0.27842 1.19997 1.52317 2.10971 3.19527 3.21196 3.24138 3.26671 3.31336 3.34847 3.92655 4.08860 4.31096 4.36457 4.73272 4.81102 4.87895 4.88259 5.05917 5.11071 5.21074 5.23715 5.25324 5.29855 5.34305 5.49164 5.49468 5.63396 5.67919 5.79308 5.82054 5.98392 6.05445 6.16173 6.28710 6.53307 7.00048 7.19808 7.50665 7.56541 7.64257 8.07796 8.30967 8.63201 9.19514 9.55980 10.07831 10.77492 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012544 B = 0.002507 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.584180 B =11165.279196 C =12458.585948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.271 6.271 3 C 0.188 3.812 4 C -0.215 4.215 5 C -0.196 4.196 6 S 0.233 5.767 7 C -0.325 4.325 8 C 0.600 3.400 9 O -0.522 6.522 10 N -0.725 5.725 11 C 0.147 3.853 12 H 0.099 0.901 13 C -0.161 4.161 14 C 0.050 3.950 15 N -0.667 5.667 16 C 0.050 3.950 17 C 0.440 3.560 18 O -0.581 6.581 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.931 3.069 25 H -0.273 1.273 26 H -0.285 1.285 27 H -0.274 1.274 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.103 0.897 31 H 0.150 0.850 32 H 0.175 0.825 33 H 0.391 0.609 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.055 0.945 37 H 0.032 0.968 38 H 0.088 0.912 39 H 0.347 0.653 40 H 0.087 0.913 41 H 0.043 0.957 42 H 0.392 0.608 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.516 -0.259 -19.118 24.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.182 6.182 3 C 0.127 3.873 4 C -0.249 4.249 5 C -0.335 4.335 6 S 0.498 5.502 7 C -0.445 4.445 8 C 0.389 3.611 9 O -0.400 6.400 10 N -0.378 5.378 11 C 0.042 3.958 12 H 0.117 0.883 13 C -0.220 4.220 14 C -0.080 4.080 15 N -0.300 5.300 16 C -0.083 4.083 17 C 0.225 3.775 18 O -0.465 6.465 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.121 0.879 31 H 0.168 0.832 32 H 0.192 0.808 33 H 0.225 0.775 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.050 0.950 38 H 0.106 0.894 39 H 0.167 0.833 40 H 0.106 0.894 41 H 0.061 0.939 42 H 0.225 0.775 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.907 -1.023 -18.414 23.714 hybrid contribution -0.877 1.178 0.231 1.486 sum -15.784 0.155 -18.183 24.079 Atomic orbital electron populations 1.23186 0.78417 1.04429 1.01259 1.86339 1.20813 1.24080 1.86964 1.18274 0.90251 0.85456 0.93320 1.20045 1.02106 0.90937 1.11795 1.25050 0.99180 1.03825 1.05420 1.83122 1.03510 0.95501 1.68055 1.22764 0.95432 0.98387 1.27878 1.15442 0.81478 0.87685 0.76515 1.90861 1.79447 1.20079 1.49630 1.45888 1.05669 1.09578 1.76643 1.21014 0.87727 0.90616 0.96411 0.88253 1.22150 1.02415 1.01367 0.96042 1.22316 0.96183 0.99969 0.89520 1.60017 1.10114 1.40346 1.19525 1.21700 0.92355 0.99060 0.95178 1.19812 0.86249 0.84291 0.87102 1.90535 1.21377 1.61078 1.73497 1.41852 1.09081 1.53128 1.16019 1.19654 0.96121 1.35208 0.91864 0.87996 1.25254 0.94732 0.97825 1.00136 1.69606 0.99711 1.46367 1.38722 0.85920 0.77447 0.79317 0.81554 1.19883 1.20995 1.19934 0.92496 0.92657 0.87853 0.83248 0.80805 0.77540 0.91392 0.91831 0.92626 0.95027 0.89375 0.83274 0.89433 0.93869 0.77467 0.91848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.94 101.05 1.00 1.18 16 2 O -0.27 -3.55 9.36 -36.58 -0.34 -3.90 16 3 C 0.19 2.34 6.70 -40.01 -0.27 2.07 16 4 C -0.22 -1.95 9.17 -41.28 -0.38 -2.33 16 5 C -0.20 -1.57 10.90 29.11 0.32 -1.26 16 6 S 0.23 2.21 22.00 -107.50 -2.37 -0.16 16 7 C -0.32 -4.30 6.28 -38.60 -0.24 -4.54 16 8 C 0.60 9.20 7.56 -14.93 -0.11 9.09 16 9 O -0.52 -9.76 15.50 -12.39 -0.19 -9.95 16 10 N -0.73 -9.35 4.34 -56.67 -0.25 -9.60 16 11 C 0.15 1.84 2.88 -67.93 -0.20 1.65 16 12 H 0.10 1.50 7.57 -51.93 -0.39 1.11 16 13 C -0.16 -1.65 9.48 37.15 0.35 -1.29 16 14 C 0.05 0.62 5.30 -3.82 -0.02 0.59 16 15 N -0.67 -11.03 6.12 -115.05 -0.70 -11.73 16 16 C 0.05 0.88 6.17 -4.97 -0.03 0.85 16 17 C 0.44 10.49 7.82 -10.99 -0.09 10.40 16 18 O -0.58 -16.04 15.78 5.55 0.09 -15.95 16 19 N -0.56 -14.36 5.29 -10.96 -0.06 -14.42 16 20 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 21 H 0.10 3.00 7.16 -52.48 -0.38 2.63 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.60 13.05 55.50 0.72 -23.87 16 24 Si 0.93 21.17 29.55 -169.99 -5.02 16.14 16 25 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 28 H 0.06 0.36 7.87 -51.93 -0.41 -0.05 16 29 H 0.05 0.31 7.89 -51.93 -0.41 -0.10 16 30 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.15 0.95 6.99 -52.48 -0.37 0.58 16 32 H 0.17 0.86 8.06 -52.49 -0.42 0.44 16 33 H 0.39 4.34 7.12 -40.82 -0.29 4.05 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.35 5.94 7.28 -39.29 -0.29 5.66 16 40 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 41 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.39 9.50 7.90 -40.82 -0.32 9.17 16 43 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 380.99 15.07 5.74 5.74 Total: -1.00 -36.04 380.99 -8.07 -44.11 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: -5.79 Total: 15.21 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: 0.10 Total: 8.37 kcal Atomic # 7 Polarization: -59.33 SS G_CDS: -0.28 Total: -59.62 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: -0.45 Total: -29.80 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -2.37 Total: -0.16 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.04 -8.07 -44.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275417188.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.585 kcal (2) G-P(sol) polarization free energy of solvation -36.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds