Wall clock time and date at job start Tue Mar 31 2020 23:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 5 5 N 1.46505 * 109.47578 * 174.99814 * 4 2 1 6 6 C 1.34776 * 120.00162 * 180.02562 * 5 4 2 7 7 O 1.21280 * 119.99923 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99815 * 180.02562 * 6 5 4 9 9 C 1.50705 * 109.46778 * 179.97438 * 8 6 5 10 10 C 1.41375 * 126.79846 * 124.70609 * 9 8 6 11 11 C 1.35450 * 103.98900 * 179.88752 * 10 9 8 12 12 O 1.34044 * 106.43820 * 0.37398 * 11 10 9 13 13 N 1.20915 * 111.57021 * 359.74404 * 12 11 10 14 14 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 15 15 C 1.46499 * 119.99936 * 299.99999 * 14 2 1 16 16 C 1.34777 * 120.00000 * 119.99453 * 14 2 1 17 17 O 1.21274 * 120.00145 * 0.02562 * 16 14 2 18 18 C 1.50696 * 119.99735 * 180.02562 * 16 14 2 19 19 S 1.81008 * 109.47100 * 180.02562 * 18 16 14 20 20 C 1.76197 * 99.99875 * 180.02562 * 19 18 16 21 21 H 1.07998 * 120.00517 * 359.97438 * 20 19 18 22 22 C 1.38804 * 119.99834 * 179.97438 * 20 19 18 23 23 N 1.31635 * 119.99670 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99923 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47121 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47158 * 120.00058 * 24 22 20 27 27 H 1.48510 * 109.46931 * 239.99978 * 24 22 20 28 28 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 31 31 H 1.09001 * 109.47359 * 295.00205 * 4 2 1 32 32 H 1.09002 * 109.46906 * 55.00224 * 4 2 1 33 33 H 0.96998 * 119.99536 * 0.02562 * 5 4 2 34 34 H 1.08991 * 109.46751 * 299.99574 * 8 6 5 35 35 H 1.09002 * 109.47083 * 60.00009 * 8 6 5 36 36 H 1.08010 * 128.01038 * 0.02970 * 10 9 8 37 37 H 1.07995 * 126.78373 * 180.10073 * 11 10 9 38 38 H 1.09000 * 109.46842 * 89.99634 * 15 14 2 39 39 H 1.08994 * 109.47173 * 210.00167 * 15 14 2 40 40 H 1.08998 * 109.46730 * 330.00200 * 15 14 2 41 41 H 1.09002 * 109.47152 * 300.00044 * 18 16 14 42 42 H 1.09000 * 109.47333 * 60.00571 * 18 16 14 43 43 H 0.96999 * 119.99396 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2491 5 7 3.5001 -0.8264 1.1905 6 6 4.1731 -1.4292 2.1905 7 8 3.5700 -1.8842 3.1393 8 6 5.6751 -1.5369 2.1304 9 6 6.1774 -2.2474 3.3608 10 6 6.9889 -3.4045 3.3986 11 6 7.1617 -3.6402 4.7211 12 8 6.4835 -2.6825 5.3689 13 7 5.9453 -1.9209 4.5993 14 7 2.0184 -0.6906 -1.1962 15 6 1.6645 -2.0931 -1.4281 16 6 2.7931 -0.0355 -2.0834 17 8 3.0864 1.1255 -1.8913 18 6 3.2950 -0.7457 -3.3141 19 16 4.3012 0.3918 -4.2990 20 6 4.7425 -0.6686 -5.6352 21 1 4.3915 -1.6898 -5.6528 22 6 5.5414 -0.1915 -6.6651 23 7 5.9697 1.0531 -6.6433 24 14 6.0087 -1.3155 -8.0820 25 1 5.4048 -2.6555 -7.8707 26 1 5.5065 -0.7410 -9.3560 27 1 7.4869 -1.4436 -8.1455 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.7517 -0.1584 2.1369 32 1 1.6055 -1.7198 1.2950 33 1 3.9825 -0.4622 0.4318 34 1 5.9637 -2.0991 1.2424 35 1 6.1094 -0.5381 2.0852 36 1 7.3823 -3.9685 2.5656 37 1 7.7296 -4.4439 5.1660 38 1 0.7376 -2.1442 -1.9994 39 1 2.4629 -2.5818 -1.9864 40 1 1.5295 -2.5968 -0.4710 41 1 3.9004 -1.6023 -3.0178 42 1 2.4470 -1.0878 -3.9074 43 1 6.5276 1.3866 -7.3633 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280444273.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:58 Heat of formation + Delta-G solvation = -6.977550 kcal Electronic energy + Delta-G solvation = -26883.062043 eV Core-core repulsion = 22865.457986 eV Total energy + Delta-G solvation = -4017.604057 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.11339 -40.28306 -39.38346 -36.62480 -34.84087 -34.28724 -32.49066 -32.24371 -31.90541 -29.82289 -28.80326 -26.93777 -26.26905 -25.54731 -23.34528 -22.19853 -21.64790 -20.39264 -19.19824 -18.02113 -17.85809 -17.80298 -17.08597 -17.01069 -16.43031 -15.82219 -15.53426 -15.43922 -14.86571 -14.84355 -14.33545 -13.96938 -13.72462 -13.47496 -13.35680 -13.20416 -13.15786 -12.95243 -12.75655 -12.49593 -12.43083 -12.20540 -12.11990 -11.84703 -11.46132 -11.16318 -11.12251 -11.07464 -10.80644 -10.45252 -9.98345 -9.86116 -9.80745 -9.50212 -9.23213 -9.13455 -8.69877 -8.30375 -6.57798 -6.28163 -3.99270 1.34403 1.98647 2.47097 2.76149 2.89071 3.00429 3.11631 3.16837 3.21594 3.26432 3.51584 3.87464 4.13955 4.29885 4.44440 4.63923 4.78817 4.90407 4.96594 4.98698 4.99353 5.04403 5.07386 5.07430 5.25390 5.31408 5.34899 5.45739 5.47029 5.47277 5.51966 5.65625 5.76802 5.79035 5.86419 5.95024 6.04575 6.22051 6.53133 7.29682 7.38325 7.53836 8.03881 8.11614 8.29019 8.40111 9.17620 10.79215 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010404 B = 0.002672 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2690.636377 B =10477.419638 C =12425.134948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.123 3.877 3 H 0.110 0.890 4 C 0.113 3.887 5 N -0.724 5.724 6 C 0.517 3.483 7 O -0.532 6.532 8 C -0.066 4.066 9 C 0.025 3.975 10 C -0.227 4.227 11 C -0.065 4.065 12 O 0.103 5.897 13 N -0.338 5.338 14 N -0.619 5.619 15 C 0.079 3.921 16 C 0.532 3.468 17 O -0.515 6.515 18 C -0.151 4.151 19 S -0.061 6.061 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.406 0.594 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.173 0.827 37 H 0.216 0.784 38 H 0.056 0.944 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.505 -10.200 18.362 21.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.019 3.981 3 H 0.128 0.872 4 C -0.012 4.012 5 N -0.376 5.376 6 C 0.302 3.698 7 O -0.408 6.408 8 C -0.106 4.106 9 C -0.134 4.134 10 C -0.249 4.249 11 C -0.147 4.147 12 O 0.033 5.967 13 N -0.039 5.039 14 N -0.356 5.356 15 C -0.065 4.065 16 C 0.320 3.680 17 O -0.389 6.389 18 C -0.301 4.301 19 S 0.166 5.834 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.205 1.205 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.242 0.758 34 H 0.137 0.863 35 H 0.134 0.866 36 H 0.190 0.810 37 H 0.232 0.768 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.119 -7.671 19.820 21.648 hybrid contribution 0.570 -2.660 -2.256 3.534 sum -3.548 -10.331 17.563 20.683 Atomic orbital electron populations 1.22040 0.93744 1.02665 1.03055 1.21296 0.94934 0.98579 0.83292 0.87221 1.21731 0.80124 1.01345 0.98009 1.45892 1.07819 1.59985 1.23945 1.20279 0.89359 0.77868 0.82265 1.90738 1.70028 1.47239 1.32775 1.20010 0.92943 1.02945 0.94719 1.22859 1.00286 0.96982 0.93289 1.22727 1.04539 0.99418 0.98189 1.25993 0.99804 0.96453 0.92406 1.84871 1.48045 1.29935 1.33801 1.73884 1.14219 1.13739 1.02021 1.47968 1.52219 1.12629 1.22792 1.21749 1.01328 0.81518 1.01877 1.20434 0.77129 0.86809 0.83628 1.90708 1.56333 1.16373 1.75526 1.23567 1.04431 1.04629 0.97491 1.85403 1.60792 1.15402 1.21835 1.22882 1.37294 0.99712 1.08426 0.90909 1.24995 0.95088 0.95536 0.97943 1.70024 1.33131 1.14358 1.32690 0.86123 0.78333 0.80097 0.80984 1.19615 1.20550 1.20545 0.91195 0.92065 0.91396 0.90418 0.91162 0.75828 0.86289 0.86633 0.80984 0.76776 0.92561 0.90589 0.91345 0.89247 0.89212 0.92197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 9.19 37.16 0.34 -1.00 16 2 C 0.12 1.31 2.80 -67.93 -0.19 1.12 16 3 H 0.11 1.39 6.90 -51.93 -0.36 1.04 16 4 C 0.11 1.16 4.92 -4.04 -0.02 1.14 16 5 N -0.72 -8.10 5.39 -60.29 -0.32 -8.43 16 6 C 0.52 6.47 7.82 -10.98 -0.09 6.39 16 7 O -0.53 -8.59 15.59 5.56 0.09 -8.50 16 8 C -0.07 -0.66 6.30 -29.03 -0.18 -0.84 16 9 C 0.03 0.29 6.10 -82.10 -0.50 -0.21 16 10 C -0.23 -1.93 11.12 -39.38 -0.44 -2.36 16 11 C -0.07 -0.48 12.30 29.74 0.37 -0.11 16 12 O 0.10 1.14 11.20 17.17 0.19 1.33 16 13 N -0.34 -4.56 11.46 33.42 0.38 -4.18 16 14 N -0.62 -7.51 2.24 -173.94 -0.39 -7.90 16 15 C 0.08 0.74 9.30 59.85 0.56 1.30 16 16 C 0.53 8.92 7.40 -10.99 -0.08 8.83 16 17 O -0.52 -10.50 15.19 5.56 0.08 -10.41 16 18 C -0.15 -2.80 4.71 36.00 0.17 -2.63 16 19 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 20 C -0.53 -14.60 9.50 30.94 0.29 -14.31 16 21 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 22 C 0.07 2.03 5.49 -17.43 -0.10 1.94 16 23 N -0.87 -25.37 13.22 55.49 0.73 -24.63 16 24 Si 0.92 20.74 29.55 -169.99 -5.02 15.71 16 25 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.46 7.67 -51.93 -0.40 0.06 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.71 6.88 -51.93 -0.36 0.35 16 33 H 0.41 4.62 7.87 -40.82 -0.32 4.30 16 34 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.17 0.99 8.06 -52.48 -0.42 0.56 16 37 H 0.22 0.54 8.06 -52.49 -0.42 0.12 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.73 6.44 -51.93 -0.33 0.39 16 40 H 0.07 0.55 6.53 -51.93 -0.34 0.21 16 41 H 0.09 1.51 7.40 -51.91 -0.38 1.13 16 42 H 0.09 1.58 8.11 -51.92 -0.42 1.16 16 43 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 381.56 15.07 5.75 5.75 Total: -1.00 -36.97 381.56 -6.43 -43.40 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -5.84 Total: 2.38 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: 0.13 Total: -0.75 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: 0.40 Total: -45.14 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: 0.36 Total: -17.58 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.97 -6.43 -43.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280444273.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.421 kcal (2) G-P(sol) polarization free energy of solvation -36.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds