Wall clock time and date at job start Tue Mar 31 2020 23:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46821 * 2 1 4 4 C 1.52995 * 109.47187 * 119.99498 * 2 1 3 5 5 C 1.53000 * 109.47152 * 185.00354 * 4 2 1 6 6 C 1.53000 * 109.47214 * 180.02562 * 5 4 2 7 7 N 1.46499 * 109.47215 * 180.02562 * 6 5 4 8 8 C 1.34778 * 119.99813 * 179.97438 * 7 6 5 9 9 O 1.21486 * 120.00252 * 359.97438 * 8 7 6 10 10 C 1.48332 * 119.99542 * 179.97438 * 8 7 6 11 11 C 1.42274 * 126.93462 * 179.70651 * 10 8 7 12 12 C 1.35319 * 103.91846 * 179.89035 * 11 10 8 13 13 O 1.34011 * 106.67207 * 0.37399 * 12 11 10 14 14 N 1.20904 * 111.84411 * 359.74173 * 13 12 11 15 15 N 1.46496 * 109.47129 * 240.00164 * 2 1 3 16 16 C 1.34777 * 120.00258 * 85.00009 * 15 2 1 17 17 O 1.21279 * 120.00166 * 359.97438 * 16 15 2 18 18 C 1.50706 * 119.99762 * 179.97438 * 16 15 2 19 19 S 1.81003 * 109.46853 * 179.97438 * 18 16 15 20 20 C 1.76196 * 99.99846 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00030 * 359.97438 * 20 19 18 22 22 C 1.38802 * 119.99637 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00513 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99570 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47213 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.46950 * 120.00258 * 24 22 20 27 27 H 1.48503 * 109.47177 * 240.00017 * 24 22 20 28 28 H 1.09006 * 109.47229 * 60.00541 * 1 2 3 29 29 H 1.09002 * 109.46821 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47302 * 300.00204 * 1 2 3 31 31 H 1.08994 * 109.47690 * 305.00545 * 4 2 1 32 32 H 1.09003 * 109.47048 * 65.00365 * 4 2 1 33 33 H 1.09004 * 109.46980 * 300.00055 * 5 4 2 34 34 H 1.08995 * 109.47311 * 60.00363 * 5 4 2 35 35 H 1.09004 * 109.46768 * 299.99665 * 6 5 4 36 36 H 1.09003 * 109.47442 * 59.99732 * 6 5 4 37 37 H 0.96999 * 119.99924 * 359.97438 * 7 6 5 38 38 H 1.07995 * 128.04085 * 0.02562 * 11 10 8 39 39 H 1.08004 * 126.66247 * 180.08594 * 12 11 10 40 40 H 0.96999 * 119.99694 * 264.99399 * 15 2 1 41 41 H 1.09000 * 109.47318 * 299.99141 * 18 16 15 42 42 H 1.09000 * 109.47161 * 59.99772 * 18 16 15 43 43 H 0.96995 * 120.00407 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.6131 1.3137 6 6 4.0749 -1.3347 2.5627 7 7 5.5349 -1.2308 2.6247 8 6 6.2078 -1.7957 3.6467 9 8 5.6037 -2.3908 4.5167 10 6 7.6861 -1.6909 3.7092 11 6 8.5391 -2.2224 4.7162 12 6 9.7801 -1.8611 4.3156 13 8 9.6309 -1.1724 3.1758 14 7 8.4694 -1.0855 2.8515 15 7 2.0183 -0.6906 -1.1962 16 6 2.1471 -0.0182 -2.3571 17 8 1.8582 1.1584 -2.4118 18 6 2.6500 -0.7286 -3.5874 19 16 2.7100 0.4342 -4.9733 20 6 3.3147 -0.6306 -6.2401 21 1 3.5255 -1.6666 -6.0197 22 6 3.5211 -0.1376 -7.5211 23 7 3.2657 1.1255 -7.7894 24 14 4.1629 -1.2664 -8.8641 25 1 4.3696 -2.6282 -8.3092 26 1 3.1761 -1.3284 -9.9721 27 1 5.4526 -0.7401 -9.3787 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.6054 -0.2617 2.1370 32 1 1.7517 -1.7714 1.2056 33 1 3.9995 -1.0726 0.4260 34 1 3.8531 0.4372 1.3574 35 1 3.6403 -0.8755 3.4506 36 1 3.7866 -2.3850 2.5187 37 1 6.0172 -0.7553 1.9303 38 1 8.2610 -2.7854 5.5949 39 1 10.7099 -2.0808 4.8194 40 1 2.2491 -1.6317 -1.1525 41 1 3.6494 -1.1203 -3.3979 42 1 1.9778 -1.5509 -3.8325 43 1 3.4096 1.4699 -8.6847 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280790921.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:01 Heat of formation + Delta-G solvation = -25.549873 kcal Electronic energy + Delta-G solvation = -25608.618339 eV Core-core repulsion = 21590.208926 eV Total energy + Delta-G solvation = -4018.409413 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.58123 -40.07672 -39.44033 -36.90771 -35.31637 -34.49104 -32.73016 -32.43526 -32.14769 -30.82718 -28.52727 -27.01349 -25.49287 -24.69475 -23.49664 -22.26919 -21.53496 -20.80814 -20.32048 -18.97577 -18.23576 -17.85606 -17.27176 -16.63805 -16.54952 -16.04793 -15.78803 -15.08142 -14.93657 -14.81441 -14.69910 -14.18379 -14.04581 -13.90268 -13.70572 -13.36798 -13.16655 -12.78394 -12.62699 -12.38088 -12.20108 -11.95054 -11.87973 -11.45842 -11.25432 -11.07756 -11.02725 -10.96964 -10.93939 -10.75988 -10.69967 -10.29798 -9.80975 -9.59004 -9.38082 -9.08508 -8.90237 -8.23794 -6.50581 -6.22522 -3.92898 0.64339 1.19461 2.41435 2.67587 2.70335 3.03798 3.09831 3.20961 3.27895 3.32716 3.46146 3.72224 4.11360 4.19699 4.27884 4.51049 4.59071 4.68434 4.74819 4.88454 4.96827 5.09257 5.12742 5.19158 5.19892 5.33594 5.34908 5.42339 5.49016 5.59192 5.68742 5.72970 5.81198 5.88143 5.93266 6.04908 6.13211 6.20789 6.68139 6.88999 7.46481 7.59211 7.63076 7.71953 8.34726 8.62435 9.23023 10.84935 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009597 B = 0.002062 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2916.890710 B =13578.995547 C =15949.891223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.143 3.857 3 H 0.088 0.912 4 C -0.121 4.121 5 C -0.135 4.135 6 C 0.119 3.881 7 N -0.713 5.713 8 C 0.599 3.401 9 O -0.523 6.523 10 C -0.032 4.032 11 C -0.186 4.186 12 C -0.057 4.057 13 O 0.126 5.874 14 N -0.329 5.329 15 N -0.734 5.734 16 C 0.533 3.467 17 O -0.518 6.518 18 C -0.154 4.154 19 S -0.061 6.061 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.410 0.590 38 H 0.182 0.818 39 H 0.226 0.774 40 H 0.396 0.604 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.792 -7.904 27.383 29.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.038 3.962 3 H 0.106 0.894 4 C -0.159 4.159 5 C -0.173 4.173 6 C -0.004 4.004 7 N -0.365 5.365 8 C 0.383 3.617 9 O -0.398 6.398 10 C -0.191 4.191 11 C -0.208 4.208 12 C -0.137 4.137 13 O 0.049 5.951 14 N -0.029 5.029 15 N -0.389 5.389 16 C 0.319 3.681 17 O -0.392 6.392 18 C -0.305 4.305 19 S 0.166 5.834 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.245 0.755 38 H 0.199 0.801 39 H 0.242 0.758 40 H 0.230 0.770 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.530 -5.540 26.649 27.991 hybrid contribution 1.111 -2.831 -0.352 3.061 sum 7.641 -8.370 26.297 28.636 Atomic orbital electron populations 1.22182 0.95334 1.02046 1.02687 1.20877 0.94005 0.97674 0.83656 0.89351 1.21788 0.94348 1.01702 0.98096 1.21845 0.96522 1.01658 0.97272 1.21517 0.78206 1.01568 0.99104 1.45905 1.08579 1.55859 1.26197 1.16858 0.83600 0.79151 0.82115 1.90810 1.68088 1.42270 1.38624 1.23607 0.96764 1.03302 0.95466 1.22794 0.90876 1.04928 1.02216 1.26112 1.01394 0.97533 0.88699 1.84823 1.21306 1.54560 1.34426 1.74222 0.89908 1.17500 1.21257 1.46125 1.69365 1.13827 1.09597 1.20295 0.76822 0.87222 0.83782 1.90697 1.48295 1.15795 1.84384 1.23540 1.03593 1.04858 0.98487 1.85394 1.86255 1.12946 0.98807 1.22906 1.50797 0.98210 0.96387 0.90911 1.24998 0.95120 0.95540 0.97976 1.70023 1.45615 1.13206 1.21428 0.86119 0.78537 0.80128 0.80721 1.19634 1.20563 1.20552 0.91632 0.92580 0.91913 0.90035 0.90929 0.90573 0.90705 0.90904 0.90880 0.75494 0.80081 0.75751 0.76988 0.89346 0.89306 0.92235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 9.48 37.16 0.35 -1.35 16 2 C 0.14 1.51 2.57 -67.94 -0.17 1.34 16 3 H 0.09 1.12 7.58 -51.93 -0.39 0.73 16 4 C -0.12 -0.85 4.75 -26.73 -0.13 -0.98 16 5 C -0.14 -1.00 5.22 -26.73 -0.14 -1.14 16 6 C 0.12 0.92 5.67 -4.04 -0.02 0.90 16 7 N -0.71 -6.35 5.55 -61.09 -0.34 -6.68 16 8 C 0.60 6.40 7.85 -12.11 -0.10 6.30 16 9 O -0.52 -6.90 16.95 5.38 0.09 -6.81 16 10 C -0.03 -0.30 7.19 -82.52 -0.59 -0.89 16 11 C -0.19 -1.20 10.99 -39.07 -0.43 -1.63 16 12 C -0.06 -0.23 12.28 29.69 0.36 0.13 16 13 O 0.13 0.90 11.18 17.26 0.19 1.09 16 14 N -0.33 -3.08 11.84 33.30 0.39 -2.68 16 15 N -0.73 -9.09 4.53 -53.81 -0.24 -9.34 16 16 C 0.53 9.59 7.81 -10.98 -0.09 9.50 16 17 O -0.52 -11.45 15.53 5.56 0.09 -11.36 16 18 C -0.15 -3.06 6.16 36.01 0.22 -2.84 16 19 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 20 C -0.53 -15.21 9.50 30.94 0.29 -14.92 16 21 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 22 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 23 N -0.87 -26.15 13.22 55.49 0.73 -25.42 16 24 Si 0.92 21.42 29.55 -169.99 -5.02 16.39 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.61 7.75 -51.93 -0.40 0.21 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.41 3.34 8.23 -40.82 -0.34 3.00 16 38 H 0.18 0.88 8.06 -52.49 -0.42 0.46 16 39 H 0.23 -0.18 8.06 -52.48 -0.42 -0.60 16 40 H 0.40 3.83 8.60 -40.82 -0.35 3.48 16 41 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 42 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 43 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 391.03 15.07 5.89 5.89 Total: -1.00 -37.46 391.03 -7.06 -44.52 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -6.10 Total: 1.83 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -0.53 Total: -3.59 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: 0.54 Total: -44.12 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: 0.37 Total: -17.08 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -37.46 -7.06 -44.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280790921.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.973 kcal (2) G-P(sol) polarization free energy of solvation -37.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds