Wall clock time and date at job start Tue Mar 31 2020 23:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46821 * 2 1 4 4 C 1.52995 * 109.47187 * 119.99498 * 2 1 3 5 5 C 1.53000 * 109.47152 * 185.00354 * 4 2 1 6 6 C 1.53000 * 109.47214 * 180.02562 * 5 4 2 7 7 N 1.46499 * 109.47215 * 180.02562 * 6 5 4 8 8 C 1.34778 * 119.99813 * 179.97438 * 7 6 5 9 9 O 1.21486 * 120.00252 * 359.97438 * 8 7 6 10 10 C 1.48332 * 119.99542 * 179.97438 * 8 7 6 11 11 C 1.42274 * 126.93462 * 179.70651 * 10 8 7 12 12 C 1.35319 * 103.91846 * 179.89035 * 11 10 8 13 13 O 1.34011 * 106.67207 * 0.37399 * 12 11 10 14 14 N 1.20904 * 111.84411 * 359.74173 * 13 12 11 15 15 N 1.46496 * 109.47129 * 240.00164 * 2 1 3 16 16 C 1.34777 * 120.00258 * 85.00009 * 15 2 1 17 17 O 1.21279 * 120.00166 * 359.97438 * 16 15 2 18 18 C 1.50706 * 119.99762 * 179.97438 * 16 15 2 19 19 S 1.81003 * 109.46853 * 179.97438 * 18 16 15 20 20 C 1.76196 * 99.99846 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00030 * 359.97438 * 20 19 18 22 22 C 1.38802 * 119.99637 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00513 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99570 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47213 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.46950 * 120.00258 * 24 22 20 27 27 H 1.48503 * 109.47177 * 240.00017 * 24 22 20 28 28 H 1.09006 * 109.47229 * 60.00541 * 1 2 3 29 29 H 1.09002 * 109.46821 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47302 * 300.00204 * 1 2 3 31 31 H 1.08994 * 109.47690 * 305.00545 * 4 2 1 32 32 H 1.09003 * 109.47048 * 65.00365 * 4 2 1 33 33 H 1.09004 * 109.46980 * 300.00055 * 5 4 2 34 34 H 1.08995 * 109.47311 * 60.00363 * 5 4 2 35 35 H 1.09004 * 109.46768 * 299.99665 * 6 5 4 36 36 H 1.09003 * 109.47442 * 59.99732 * 6 5 4 37 37 H 0.96999 * 119.99924 * 359.97438 * 7 6 5 38 38 H 1.07995 * 128.04085 * 0.02562 * 11 10 8 39 39 H 1.08004 * 126.66247 * 180.08594 * 12 11 10 40 40 H 0.96999 * 119.99694 * 264.99399 * 15 2 1 41 41 H 1.09000 * 109.47318 * 299.99141 * 18 16 15 42 42 H 1.09000 * 109.47161 * 59.99772 * 18 16 15 43 43 H 0.96995 * 120.00407 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.6131 1.3137 6 6 4.0749 -1.3347 2.5627 7 7 5.5349 -1.2308 2.6247 8 6 6.2078 -1.7957 3.6467 9 8 5.6037 -2.3908 4.5167 10 6 7.6861 -1.6909 3.7092 11 6 8.5391 -2.2224 4.7162 12 6 9.7801 -1.8611 4.3156 13 8 9.6309 -1.1724 3.1758 14 7 8.4694 -1.0855 2.8515 15 7 2.0183 -0.6906 -1.1962 16 6 2.1471 -0.0182 -2.3571 17 8 1.8582 1.1584 -2.4118 18 6 2.6500 -0.7286 -3.5874 19 16 2.7100 0.4342 -4.9733 20 6 3.3147 -0.6306 -6.2401 21 1 3.5255 -1.6666 -6.0197 22 6 3.5211 -0.1376 -7.5211 23 7 3.2657 1.1255 -7.7894 24 14 4.1629 -1.2664 -8.8641 25 1 4.3696 -2.6282 -8.3092 26 1 3.1761 -1.3284 -9.9721 27 1 5.4526 -0.7401 -9.3787 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.6054 -0.2617 2.1370 32 1 1.7517 -1.7714 1.2056 33 1 3.9995 -1.0726 0.4260 34 1 3.8531 0.4372 1.3574 35 1 3.6403 -0.8755 3.4506 36 1 3.7866 -2.3850 2.5187 37 1 6.0172 -0.7553 1.9303 38 1 8.2610 -2.7854 5.5949 39 1 10.7099 -2.0808 4.8194 40 1 2.2491 -1.6317 -1.1525 41 1 3.6494 -1.1203 -3.3979 42 1 1.9778 -1.5509 -3.8325 43 1 3.4096 1.4699 -8.6847 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280790921.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:00 Heat of formation + Delta-G solvation = -53.912058 kcal Electronic energy + Delta-G solvation = -25609.848216 eV Core-core repulsion = 21590.208926 eV Total energy + Delta-G solvation = -4019.639290 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -46.13956 -40.91919 -40.69106 -37.86703 -36.22918 -35.07292 -34.59389 -33.62823 -32.82078 -31.82030 -29.92543 -27.72746 -27.65859 -25.37753 -24.00869 -23.05329 -22.40071 -21.63484 -21.42071 -19.83932 -19.52231 -18.81746 -17.95796 -17.89542 -17.50853 -16.94061 -16.88620 -16.72683 -16.39195 -15.97147 -15.64187 -15.34551 -14.89736 -14.76723 -14.69386 -14.47951 -14.23601 -14.11633 -13.58648 -13.41421 -13.17054 -13.12745 -12.92128 -12.77756 -12.62647 -12.54707 -12.35726 -11.94943 -11.72372 -11.68741 -11.57137 -11.51815 -11.16670 -10.88840 -10.74979 -10.32078 -10.27439 -10.08209 -8.66994 -8.35631 -6.13353 0.03448 0.76260 1.27203 1.40479 1.47062 1.58111 1.64933 1.77448 1.97297 2.25765 2.30155 2.33990 2.86033 2.98493 3.32198 3.56632 3.62988 3.95697 3.98379 3.99924 4.02625 4.21897 4.27239 4.29968 4.40074 4.48138 4.50960 4.64049 4.65350 4.68489 4.83499 4.86580 4.96993 5.02634 5.13464 5.18253 5.30676 5.34983 5.41253 5.60128 6.16542 6.19196 6.55659 6.80784 7.03614 7.05848 7.29787 8.73783 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009597 B = 0.002062 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2916.890710 B =13578.995547 C =15949.891223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.140 3.860 3 H 0.065 0.935 4 C -0.109 4.109 5 C -0.128 4.128 6 C 0.122 3.878 7 N -0.709 5.709 8 C 0.595 3.405 9 O -0.556 6.556 10 C -0.059 4.059 11 C -0.205 4.205 12 C -0.026 4.026 13 O 0.123 5.877 14 N -0.354 5.354 15 N -0.708 5.708 16 C 0.535 3.465 17 O -0.566 6.566 18 C -0.131 4.131 19 S -0.152 6.152 20 C -0.545 4.545 21 H 0.082 0.918 22 C 0.012 3.988 23 N -0.911 5.911 24 Si 0.999 3.001 25 H -0.257 1.257 26 H -0.274 1.274 27 H -0.274 1.274 28 H 0.029 0.971 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.412 0.588 38 H 0.193 0.807 39 H 0.277 0.723 40 H 0.414 0.586 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.015 -10.413 28.837 31.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.036 3.964 3 H 0.083 0.917 4 C -0.147 4.147 5 C -0.166 4.166 6 C -0.001 4.001 7 N -0.360 5.360 8 C 0.380 3.620 9 O -0.433 6.433 10 C -0.217 4.217 11 C -0.227 4.227 12 C -0.106 4.106 13 O 0.046 5.954 14 N -0.054 5.054 15 N -0.362 5.362 16 C 0.321 3.679 17 O -0.444 6.444 18 C -0.282 4.282 19 S 0.075 5.925 20 C -0.693 4.693 21 H 0.100 0.900 22 C -0.193 4.193 23 N -0.548 5.548 24 Si 0.821 3.179 25 H -0.181 1.181 26 H -0.199 1.199 27 H -0.199 1.199 28 H 0.048 0.952 29 H 0.091 0.909 30 H 0.103 0.897 31 H 0.120 0.880 32 H 0.111 0.889 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.248 0.752 38 H 0.210 0.790 39 H 0.293 0.707 40 H 0.251 0.749 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.744 -8.080 28.129 30.274 hybrid contribution 0.762 -2.064 -0.646 2.293 sum 8.506 -10.144 27.483 30.505 Atomic orbital electron populations 1.22148 0.94756 1.02929 1.02041 1.21053 0.94421 0.96927 0.83980 0.91672 1.21728 0.93790 1.02583 0.96615 1.21765 0.96841 1.01123 0.96863 1.21535 0.77601 1.01745 0.99204 1.45965 1.09128 1.55170 1.25777 1.17110 0.84336 0.78699 0.81881 1.90776 1.68904 1.43876 1.39780 1.23704 0.96401 1.04670 0.96901 1.23087 0.91341 1.05855 1.02463 1.27006 1.02400 0.94471 0.86712 1.84781 1.20402 1.54657 1.35535 1.74225 0.90640 1.18504 1.22070 1.45899 1.67368 1.14479 1.08426 1.20007 0.76701 0.86554 0.84679 1.90688 1.50768 1.17820 1.85169 1.23390 1.05405 1.03167 0.96243 1.85571 1.86648 1.17400 1.02857 1.23230 1.50720 0.98472 0.96869 0.90004 1.26135 0.95129 0.97212 1.00777 1.70185 1.46903 1.15456 1.22217 0.84907 0.77854 0.78202 0.76985 1.18071 1.19921 1.19898 0.95197 0.90868 0.89695 0.88045 0.88866 0.91086 0.91409 0.90723 0.90592 0.75166 0.78961 0.70726 0.74884 0.87395 0.87451 0.91999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.08 9.48 71.98 0.68 -2.40 16 2 C 0.14 2.77 2.57 44.99 0.12 2.88 16 3 H 0.07 1.64 7.58 -2.39 -0.02 1.63 16 4 C -0.11 -1.24 4.75 30.59 0.15 -1.10 16 5 C -0.13 -1.68 5.22 30.59 0.16 -1.52 16 6 C 0.12 1.73 5.67 86.38 0.49 2.22 16 7 N -0.71 -12.39 5.55 -465.50 -2.59 -14.98 16 8 C 0.60 12.75 7.85 86.93 0.68 13.43 16 9 O -0.56 -14.72 16.95 -3.67 -0.06 -14.78 16 10 C -0.06 -1.09 7.19 42.96 0.31 -0.78 16 11 C -0.20 -2.37 10.99 22.60 0.25 -2.12 16 12 C -0.03 -0.14 12.28 67.15 0.82 0.68 16 13 O 0.12 1.59 11.18 71.93 0.80 2.39 16 14 N -0.35 -6.48 11.84 -49.50 -0.59 -7.07 16 15 N -0.71 -16.45 4.53 -442.54 -2.00 -18.45 16 16 C 0.53 19.20 7.81 87.66 0.68 19.88 16 17 O -0.57 -25.89 15.53 -3.03 -0.05 -25.94 16 18 C -0.13 -5.13 6.16 71.24 0.44 -4.69 16 19 S -0.15 -8.45 20.57 -56.49 -1.16 -9.61 16 20 C -0.55 -31.21 9.50 67.96 0.65 -30.56 16 21 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 22 C 0.01 0.69 5.49 84.86 0.47 1.16 16 23 N -0.91 -56.17 13.22 21.65 0.29 -55.89 16 24 Si 1.00 43.75 29.55 68.60 2.03 45.78 16 25 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 26 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 27 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 28 H 0.03 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.07 1.02 7.75 -2.39 -0.02 1.00 16 34 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.41 6.70 8.23 -92.71 -0.76 5.94 16 38 H 0.19 1.63 8.06 -2.91 -0.02 1.61 16 39 H 0.28 -1.73 8.06 -2.91 -0.02 -1.76 16 40 H 0.41 6.85 8.60 -92.71 -0.80 6.05 16 41 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 42 H 0.11 3.81 8.14 -2.40 -0.02 3.79 16 43 H 0.27 15.46 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -86.30 391.03 2.05 -84.24 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -0.51 Total: 17.23 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: 5.89 Total: -2.92 kcal Atomic # 7 Polarization: -91.50 SS G_CDS: -4.89 Total: -96.39 kcal Atomic # 8 Polarization: -39.03 SS G_CDS: 0.69 Total: -38.33 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 16 Polarization: -8.45 SS G_CDS: -1.16 Total: -9.61 kcal Total: -86.30 2.05 -84.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280790921.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.332 kcal (2) G-P(sol) polarization free energy of solvation -86.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds