Wall clock time and date at job start Tue Mar 31 2020 23:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46615 * 2 1 4 4 C 1.52990 * 109.47084 * 240.00246 * 2 1 3 5 5 C 1.53000 * 109.47144 * 174.99958 * 4 2 1 6 6 C 1.53005 * 109.47390 * 179.97438 * 5 4 2 7 7 N 1.46492 * 109.47452 * 179.97438 * 6 5 4 8 8 C 1.34777 * 120.00269 * 180.02562 * 7 6 5 9 9 O 1.21284 * 119.99936 * 0.02562 * 8 7 6 10 10 C 1.50698 * 120.00333 * 179.97438 * 8 7 6 11 11 S 1.80999 * 109.47171 * 179.97438 * 10 8 7 12 12 C 1.76207 * 99.99764 * 179.97438 * 11 10 8 13 13 H 1.07998 * 120.00237 * 0.02562 * 12 11 10 14 14 C 1.38799 * 119.99769 * 179.97438 * 12 11 10 15 15 N 1.31629 * 120.00077 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99941 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47023 * 90.00068 * 16 14 12 18 18 H 1.48500 * 109.47103 * 210.00385 * 16 14 12 19 19 H 1.48497 * 109.47152 * 330.00156 * 16 14 12 20 20 N 1.46499 * 109.47277 * 119.99916 * 2 1 3 21 21 C 1.34784 * 119.99971 * 275.00026 * 20 2 1 22 22 O 1.21605 * 119.99806 * 359.72704 * 21 20 2 23 23 C 1.47418 * 119.99954 * 179.97438 * 21 20 2 24 24 C 1.36088 * 126.44976 * 180.02562 * 23 21 20 25 25 O 1.34258 * 106.94887 * 180.02562 * 24 23 21 26 26 C 1.34051 * 108.22974 * 359.97438 * 25 24 23 27 27 N 1.29936 * 109.23904 * 359.72222 * 26 25 24 28 28 H 1.09005 * 109.47307 * 300.00029 * 1 2 3 29 29 H 1.09000 * 109.47576 * 59.99448 * 1 2 3 30 30 H 1.08995 * 109.46954 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47330 * 294.99933 * 4 2 1 32 32 H 1.08999 * 109.47417 * 54.99517 * 4 2 1 33 33 H 1.08998 * 109.47016 * 299.99692 * 5 4 2 34 34 H 1.08993 * 109.47367 * 59.99969 * 5 4 2 35 35 H 1.09007 * 109.47110 * 300.00541 * 6 5 4 36 36 H 1.09007 * 109.46838 * 59.99790 * 6 5 4 37 37 H 0.97005 * 120.00117 * 0.02562 * 7 6 5 38 38 H 1.08998 * 109.47165 * 300.00118 * 10 8 7 39 39 H 1.09007 * 109.47027 * 60.00154 * 10 8 7 40 40 H 0.97003 * 119.99991 * 179.97438 * 15 14 12 41 41 H 0.96999 * 119.99984 * 94.99874 * 20 2 1 42 42 H 1.08004 * 126.52508 * 359.97438 * 24 23 21 43 43 H 1.07991 * 125.37688 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3137 6 6 4.0749 -1.3349 -2.5626 7 7 5.5348 -1.2310 -2.6247 8 6 6.2078 -1.7961 -3.6466 9 8 5.6047 -2.3902 -4.5151 10 6 7.7096 -1.6887 -3.7107 11 16 8.3130 -2.5427 -5.1881 12 6 10.0446 -2.2657 -5.0158 13 1 10.4208 -1.7072 -4.1714 14 6 10.9253 -2.7663 -5.9647 15 7 10.4668 -3.4474 -6.9935 16 14 12.7610 -2.4734 -5.7817 17 1 13.3637 -3.5824 -4.9993 18 1 13.3898 -2.4170 -7.1258 19 1 12.9891 -1.1878 -5.0743 20 7 2.0184 -0.6906 1.1962 21 6 2.1471 -0.0182 2.3572 22 8 1.8626 1.1629 2.4105 23 6 2.6380 -0.7132 3.5610 24 6 2.8171 -0.1660 4.7940 25 8 3.2760 -1.1427 5.5928 26 6 3.3762 -2.2654 4.8673 27 7 2.9915 -2.0242 3.6498 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.7516 -1.7714 -1.2056 32 1 1.6053 -0.2617 -2.1369 33 1 3.8531 0.4371 -1.3573 34 1 3.9994 -1.0727 -0.4260 35 1 3.7865 -2.3852 -2.5186 36 1 3.6402 -0.8758 -3.4506 37 1 6.0172 -0.7556 -1.9302 38 1 7.9972 -0.6383 -3.7548 39 1 8.1450 -2.1477 -2.8230 40 1 11.0823 -3.7970 -7.6569 41 1 2.2491 -1.6317 1.1526 42 1 2.6270 0.8591 5.0761 43 1 3.7178 -3.2206 5.2375 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280795250.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:38 Heat of formation + Delta-G solvation = -66.332323 kcal Electronic energy + Delta-G solvation = -25540.856891 eV Core-core repulsion = 21520.679018 eV Total energy + Delta-G solvation = -4020.177873 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.95118 -40.15632 -39.14608 -37.13276 -35.40538 -34.97294 -32.59819 -32.42038 -31.18397 -30.52532 -29.09214 -26.07029 -25.43078 -24.86065 -23.30243 -22.12442 -21.51050 -20.93188 -20.24752 -18.99071 -17.81422 -17.26701 -17.13965 -16.76021 -16.23189 -15.87299 -15.75347 -15.48569 -15.20406 -14.79903 -14.56616 -14.49730 -14.09760 -14.03904 -13.77924 -13.49890 -13.04480 -12.78688 -12.63645 -12.55569 -11.95904 -11.88488 -11.79046 -11.67738 -11.41090 -11.21275 -11.06946 -11.04162 -11.01777 -10.75200 -10.60578 -9.81019 -9.77523 -9.49289 -9.36434 -9.06466 -8.86263 -8.22768 -6.49196 -6.21038 -3.91496 0.59591 1.51408 2.14034 2.67566 2.85565 3.04952 3.12077 3.22726 3.28385 3.32866 3.49862 3.72014 4.21026 4.22261 4.29675 4.37127 4.58258 4.63231 4.89964 4.96785 5.00827 5.07006 5.14018 5.14104 5.22081 5.29818 5.37297 5.39110 5.48404 5.56893 5.63292 5.71362 5.83141 5.85539 5.92710 6.00669 6.09090 6.15243 6.64233 6.80633 7.13372 7.60190 7.72342 7.72857 8.35889 8.63436 9.24216 10.86375 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013582 B = 0.001768 C = 0.001615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.029414 B =15834.959096 C =17336.799882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.141 3.859 3 H 0.092 0.908 4 C -0.125 4.125 5 C -0.132 4.132 6 C 0.121 3.879 7 N -0.740 5.740 8 C 0.531 3.469 9 O -0.519 6.519 10 C -0.154 4.154 11 S -0.061 6.061 12 C -0.535 4.535 13 H 0.072 0.928 14 C 0.073 3.927 15 N -0.868 5.868 16 Si 0.919 3.081 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.272 1.272 20 N -0.706 5.706 21 C 0.604 3.396 22 O -0.537 6.537 23 C -0.078 4.078 24 C 0.017 3.983 25 O -0.199 6.199 26 C 0.183 3.817 27 N -0.467 5.467 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.398 0.602 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.268 0.732 41 H 0.410 0.590 42 H 0.230 0.770 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.659 6.136 25.403 32.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.037 3.963 3 H 0.110 0.890 4 C -0.163 4.163 5 C -0.170 4.170 6 C -0.003 4.003 7 N -0.394 5.394 8 C 0.317 3.683 9 O -0.393 6.393 10 C -0.304 4.304 11 S 0.166 5.834 12 C -0.683 4.683 13 H 0.091 0.909 14 C -0.136 4.136 15 N -0.503 5.503 16 Si 0.745 3.255 17 H -0.203 1.203 18 H -0.208 1.208 19 H -0.197 1.197 20 N -0.357 5.357 21 C 0.389 3.611 22 O -0.414 6.414 23 C -0.197 4.197 24 C -0.057 4.057 25 O -0.084 6.084 26 C -0.046 4.046 27 N -0.196 5.196 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.231 0.769 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.078 0.922 41 H 0.246 0.754 42 H 0.247 0.753 43 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -20.864 5.437 23.301 31.745 hybrid contribution 2.289 0.968 2.017 3.200 sum -18.575 6.405 25.318 32.047 Atomic orbital electron populations 1.22182 0.94837 1.02426 1.02794 1.21083 0.94227 0.97668 0.83314 0.88958 1.21830 0.95347 1.01760 0.97359 1.21810 0.95591 1.01490 0.98069 1.21268 0.80594 1.00731 0.97703 1.46008 1.07172 1.58662 1.27604 1.20307 0.89499 0.77737 0.80764 1.90700 1.69912 1.40821 1.37857 1.23533 0.93647 1.05811 1.07432 1.85392 1.04603 1.69525 1.23899 1.22869 0.91547 1.41024 1.12895 0.90943 1.24998 0.99602 0.94563 0.94478 1.70020 1.35387 1.33715 1.11161 0.86162 0.82915 0.78714 0.77672 1.20277 1.20750 1.19709 1.45923 1.66098 1.14672 1.09007 1.16735 0.77165 0.85492 0.81700 1.90837 1.51119 1.14733 1.84741 1.21820 1.10559 0.91090 0.96257 1.25349 0.97243 0.94461 0.88623 1.84469 1.63457 1.19094 1.41374 1.28191 0.99772 0.91448 0.85217 1.70773 1.14685 1.14122 1.20034 0.92074 0.91180 0.92242 0.90682 0.89492 0.91070 0.91194 0.91667 0.91622 0.76890 0.89247 0.89271 0.92192 0.75440 0.75337 0.72815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.06 9.48 37.16 0.35 -0.70 16 2 C 0.14 0.98 2.58 -67.94 -0.18 0.81 16 3 H 0.09 0.76 7.57 -51.93 -0.39 0.37 16 4 C -0.12 -0.77 4.75 -26.74 -0.13 -0.90 16 5 C -0.13 -1.01 5.22 -26.73 -0.14 -1.15 16 6 C 0.12 1.35 5.67 -4.04 -0.02 1.33 16 7 N -0.74 -9.92 5.56 -60.29 -0.33 -10.25 16 8 C 0.53 10.03 7.85 -10.99 -0.09 9.95 16 9 O -0.52 -11.93 15.86 5.55 0.09 -11.84 16 10 C -0.15 -3.13 6.16 36.00 0.22 -2.91 16 11 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 12 C -0.54 -15.34 9.50 30.94 0.29 -15.05 16 13 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 14 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 15 N -0.87 -26.27 13.22 55.49 0.73 -25.54 16 16 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 20 N -0.71 -5.37 4.53 -54.88 -0.25 -5.62 16 21 C 0.60 5.71 7.78 -12.52 -0.10 5.61 16 22 O -0.54 -6.41 16.55 5.27 0.09 -6.32 16 23 C -0.08 -0.64 6.99 -83.02 -0.58 -1.22 16 24 C 0.02 0.11 11.95 29.96 0.36 0.47 16 25 O -0.20 -1.10 10.73 6.50 0.07 -1.03 16 26 C 0.18 0.85 13.19 51.96 0.69 1.54 16 27 N -0.47 -3.52 11.06 -11.49 -0.13 -3.65 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.54 7.75 -51.93 -0.40 0.14 16 35 H 0.06 0.78 8.14 -51.92 -0.42 0.35 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.40 4.22 8.47 -40.82 -0.35 3.88 16 38 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 39 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 40 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 41 H 0.41 2.82 8.33 -40.82 -0.34 2.48 16 42 H 0.23 0.82 8.06 -52.48 -0.42 0.40 16 43 H 0.26 -0.03 8.06 -52.49 -0.42 -0.45 16 LS Contribution 391.34 15.07 5.90 5.90 Total: -1.00 -38.28 391.34 -6.58 -44.87 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -6.10 Total: 1.14 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: 0.59 Total: -0.25 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: 0.02 Total: -45.06 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: 0.25 Total: -19.19 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -38.28 -6.58 -44.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280795250.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.466 kcal (2) G-P(sol) polarization free energy of solvation -38.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds