Wall clock time and date at job start Tue Mar 31 2020 23:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47141 * 2 1 4 4 C 1.53001 * 109.47093 * 120.00191 * 2 1 3 5 5 C 1.52994 * 109.47427 * 184.99951 * 4 2 1 6 6 C 1.52998 * 109.47362 * 179.97438 * 5 4 2 7 7 N 1.46501 * 109.46720 * 180.02562 * 6 5 4 8 8 C 1.34782 * 119.99601 * 180.02562 * 7 6 5 9 9 O 1.21285 * 119.99892 * 0.02562 * 8 7 6 10 10 C 1.50696 * 119.99894 * 179.97438 * 8 7 6 11 11 S 1.80998 * 109.47150 * 180.02562 * 10 8 7 12 12 C 1.76200 * 100.00245 * 180.02562 * 11 10 8 13 13 H 1.07998 * 119.99972 * 359.97438 * 12 11 10 14 14 C 1.38802 * 120.00322 * 179.97438 * 12 11 10 15 15 N 1.31627 * 120.00037 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 119.99803 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.47196 * 89.99757 * 16 14 12 18 18 H 1.48499 * 109.47193 * 209.99896 * 16 14 12 19 19 H 1.48501 * 109.47192 * 330.00304 * 16 14 12 20 20 N 1.46500 * 109.46817 * 239.99748 * 2 1 3 21 21 C 1.34774 * 119.99813 * 85.00294 * 20 2 1 22 22 O 1.21684 * 120.00427 * 359.97438 * 21 20 2 23 23 C 1.46722 * 119.99727 * 179.97438 * 21 20 2 24 24 C 1.36347 * 126.63972 * 180.02562 * 23 21 20 25 25 N 1.33695 * 107.44949 * 179.97438 * 24 23 21 26 26 C 1.30620 * 108.99740 * 359.97438 * 25 24 23 27 27 O 1.33665 * 109.15088 * 0.23595 * 26 25 24 28 28 H 1.09004 * 109.47107 * 60.00019 * 1 2 3 29 29 H 1.09000 * 109.47141 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47145 * 300.00072 * 1 2 3 31 31 H 1.09005 * 109.46694 * 304.99811 * 4 2 1 32 32 H 1.09002 * 109.47601 * 64.99427 * 4 2 1 33 33 H 1.08997 * 109.47079 * 299.99978 * 5 4 2 34 34 H 1.09010 * 109.46877 * 59.99389 * 5 4 2 35 35 H 1.08997 * 109.47316 * 300.00212 * 6 5 4 36 36 H 1.08998 * 109.46905 * 59.99942 * 6 5 4 37 37 H 0.96995 * 120.00947 * 359.97438 * 7 6 5 38 38 H 1.08997 * 109.47343 * 300.00212 * 10 8 7 39 39 H 1.08998 * 109.47243 * 60.00165 * 10 8 7 40 40 H 0.97002 * 119.99552 * 180.02562 * 15 14 12 41 41 H 0.97005 * 120.00213 * 264.99438 * 20 2 1 42 42 H 1.07996 * 126.27611 * 359.97438 * 24 23 21 43 43 H 1.08002 * 125.42040 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6134 1.3137 6 6 4.0747 -1.3341 2.5633 7 7 5.5347 -1.2302 2.6252 8 6 6.2077 -1.7953 3.6472 9 8 5.6047 -2.3903 4.5151 10 6 7.7096 -1.6890 3.7107 11 16 8.3130 -2.5428 5.1882 12 6 10.0447 -2.2672 5.0151 13 1 10.4209 -1.7093 4.1704 14 6 10.9253 -2.7671 5.9644 15 7 12.2190 -2.5616 5.8348 16 14 10.2745 -3.7315 7.4259 17 1 10.2173 -5.1747 7.0807 18 1 11.1765 -3.5361 8.5892 19 1 8.9122 -3.2504 7.7694 20 7 2.0183 -0.6907 -1.1962 21 6 2.1470 -0.0183 -2.3571 22 8 1.8573 1.1622 -2.4119 23 6 2.6366 -0.7099 -3.5549 24 6 2.8184 -0.1655 -4.7917 25 7 3.2763 -1.1333 -5.5924 26 6 3.3826 -2.2389 -4.9051 27 8 2.9916 -2.0127 -3.6472 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.6054 -0.2617 2.1370 32 1 1.7516 -1.7716 1.2057 33 1 3.9994 -1.0729 0.4260 34 1 3.8532 0.4370 1.3573 35 1 3.6401 -0.8743 3.4508 36 1 3.7863 -2.3844 2.5200 37 1 6.0172 -0.7554 1.9306 38 1 8.1443 -2.1485 2.8230 39 1 7.9979 -0.6387 3.7543 40 1 12.8344 -2.9113 6.4981 41 1 2.2491 -1.6319 -1.1526 42 1 2.6277 0.8596 -5.0729 43 1 3.7273 -3.1862 -5.2928 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280874818.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:29 Heat of formation + Delta-G solvation = -63.003014 kcal Electronic energy + Delta-G solvation = -25633.152836 eV Core-core repulsion = 21613.119332 eV Total energy + Delta-G solvation = -4020.033503 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.97925 -40.32293 -39.32125 -37.31035 -35.56563 -35.09321 -32.91273 -32.45527 -31.49579 -30.42761 -29.26867 -26.17607 -25.59307 -24.86357 -23.31647 -22.29716 -21.70710 -21.15554 -20.42580 -19.09792 -17.87679 -17.47469 -17.39255 -16.97386 -16.40371 -16.00956 -15.80388 -15.33966 -14.98670 -14.94497 -14.87061 -14.59397 -14.21063 -13.99519 -13.74729 -13.64752 -13.21704 -12.94685 -12.81979 -12.74410 -12.08457 -12.05390 -11.94400 -11.86365 -11.46056 -11.37035 -11.27961 -11.18989 -11.02342 -10.79201 -10.62019 -9.89274 -9.86209 -9.60032 -9.53266 -9.05030 -8.99380 -8.52349 -6.93954 -6.30531 -4.02492 0.25496 1.86036 1.88492 2.54735 2.58919 2.73982 2.94199 3.27900 3.32229 3.48956 3.58763 3.62214 4.08377 4.27363 4.31488 4.36377 4.43767 4.49103 4.69533 4.79563 4.90067 4.92581 4.99363 5.01202 5.08441 5.16970 5.21712 5.25420 5.30004 5.43627 5.55365 5.60422 5.69225 5.71921 5.76322 5.85943 5.90295 5.98917 6.48583 6.72303 6.99947 7.45339 7.56536 7.92524 8.40032 8.45370 9.15547 10.78666 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015208 B = 0.001787 C = 0.001651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.714357 B =15666.719749 C =16954.330044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.141 3.859 3 H 0.095 0.905 4 C -0.125 4.125 5 C -0.133 4.133 6 C 0.121 3.879 7 N -0.738 5.738 8 C 0.530 3.470 9 O -0.520 6.520 10 C -0.125 4.125 11 S -0.142 6.142 12 C -0.522 4.522 13 H 0.088 0.912 14 C 0.095 3.905 15 N -0.880 5.880 16 Si 0.857 3.143 17 H -0.267 1.267 18 H -0.274 1.274 19 H -0.235 1.235 20 N -0.712 5.712 21 C 0.611 3.389 22 O -0.514 6.514 23 C -0.114 4.114 24 C 0.055 3.945 25 N -0.495 5.495 26 C 0.205 3.795 27 O -0.192 6.192 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.399 0.601 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.271 0.729 41 H 0.406 0.594 42 H 0.197 0.803 43 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.398 3.205 -20.230 31.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.038 3.962 3 H 0.113 0.887 4 C -0.163 4.163 5 C -0.171 4.171 6 C -0.003 4.003 7 N -0.393 5.393 8 C 0.316 3.684 9 O -0.395 6.395 10 C -0.275 4.275 11 S 0.084 5.916 12 C -0.669 4.669 13 H 0.106 0.894 14 C -0.114 4.114 15 N -0.516 5.516 16 Si 0.682 3.318 17 H -0.192 1.192 18 H -0.199 1.199 19 H -0.159 1.159 20 N -0.363 5.363 21 C 0.396 3.604 22 O -0.391 6.391 23 C -0.169 4.169 24 C -0.088 4.088 25 N -0.223 5.223 26 C -0.020 4.020 27 O -0.077 6.077 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.107 0.893 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.233 0.767 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.081 0.919 41 H 0.241 0.759 42 H 0.214 0.786 43 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -25.292 3.036 -19.287 31.951 hybrid contribution 1.043 -0.167 -0.181 1.072 sum -24.249 2.869 -19.468 31.229 Atomic orbital electron populations 1.22193 0.94606 1.02520 1.03028 1.21129 0.94380 0.97745 0.82990 0.88683 1.21842 0.95334 1.01752 0.97408 1.21822 0.95569 1.01677 0.97993 1.21276 0.80467 1.00752 0.97797 1.45973 1.07240 1.58557 1.27510 1.20289 0.89455 0.77810 0.80858 1.90699 1.69907 1.40929 1.37938 1.23281 0.93415 1.05669 1.05159 1.84780 1.07007 1.71924 1.27872 1.22315 0.88596 1.41614 1.14400 0.89388 1.24723 0.94115 0.94940 0.97594 1.69939 1.01536 1.44355 1.35819 0.86726 0.81298 0.81387 0.82384 1.19210 1.19926 1.15928 1.46039 1.66473 1.14419 1.09352 1.16327 0.77643 0.85601 0.80866 1.90919 1.50389 1.14011 1.83763 1.23208 1.12219 0.82490 0.99007 1.23662 0.96771 1.00610 0.87746 1.70495 1.18121 0.99644 1.34029 1.28514 0.95800 1.00458 0.77201 1.84505 1.62500 1.27100 1.33627 0.91918 0.92195 0.91005 0.89318 0.90662 0.91258 0.90875 0.91514 0.91635 0.76694 0.88531 0.88454 0.91928 0.75871 0.78567 0.72634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.85 9.48 37.16 0.35 -0.50 16 2 C 0.14 0.77 2.57 -67.93 -0.17 0.60 16 3 H 0.10 0.65 7.58 -51.93 -0.39 0.26 16 4 C -0.12 -0.58 4.75 -26.73 -0.13 -0.71 16 5 C -0.13 -0.82 5.21 -26.73 -0.14 -0.96 16 6 C 0.12 1.17 5.67 -4.04 -0.02 1.14 16 7 N -0.74 -8.82 5.56 -60.29 -0.33 -9.15 16 8 C 0.53 9.18 7.85 -10.99 -0.09 9.09 16 9 O -0.52 -11.03 15.86 5.55 0.09 -10.94 16 10 C -0.12 -2.37 6.16 36.00 0.22 -2.15 16 11 S -0.14 -3.58 18.55 -107.50 -1.99 -5.58 16 12 C -0.52 -14.97 10.04 30.94 0.31 -14.66 16 13 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 14 C 0.09 2.77 5.50 -17.43 -0.10 2.68 16 15 N -0.88 -26.47 13.97 55.49 0.78 -25.70 16 16 Si 0.86 21.69 27.74 -169.99 -4.71 16.98 16 17 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.24 -5.94 6.74 56.52 0.38 -5.56 16 20 N -0.71 -4.12 4.53 -55.10 -0.25 -4.37 16 21 C 0.61 5.00 7.75 -12.83 -0.10 4.90 16 22 O -0.51 -5.68 16.55 5.20 0.09 -5.60 16 23 C -0.11 -0.86 7.18 -36.84 -0.26 -1.13 16 24 C 0.05 0.43 11.66 -17.42 -0.20 0.22 16 25 N -0.49 -3.81 11.26 -14.67 -0.17 -3.98 16 26 C 0.21 0.98 13.21 52.25 0.69 1.67 16 27 O -0.19 -1.16 10.57 4.44 0.05 -1.11 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.41 7.75 -51.93 -0.40 0.01 16 34 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.40 3.70 8.47 -40.82 -0.35 3.35 16 38 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 39 H 0.10 1.73 8.14 -51.92 -0.42 1.30 16 40 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 41 H 0.41 1.75 8.40 -40.82 -0.34 1.40 16 42 H 0.20 1.26 8.06 -52.49 -0.42 0.84 16 43 H 0.26 -0.07 8.06 -52.49 -0.42 -0.49 16 LS Contribution 388.66 15.07 5.86 5.86 Total: -1.00 -37.59 388.66 -6.38 -43.97 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -6.14 Total: -0.57 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: 0.36 Total: 0.20 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: 0.03 Total: -43.20 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: 0.22 Total: -17.65 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.71 Total: 16.98 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -1.99 Total: -5.58 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -37.59 -6.38 -43.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280874818.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.032 kcal (2) G-P(sol) polarization free energy of solvation -37.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds