Wall clock time and date at job start Tue Mar 31 2020 23:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99728 * 2 1 3 5 5 C 1.53001 * 109.46997 * 174.99904 * 4 2 1 6 6 C 1.52997 * 109.46997 * 179.97438 * 5 4 2 7 7 N 1.46503 * 109.47269 * 180.02562 * 6 5 4 8 8 C 1.34771 * 120.00040 * 180.02562 * 7 6 5 9 9 O 1.21280 * 120.00244 * 0.02562 * 8 7 6 10 10 C 1.50701 * 119.99782 * 179.97438 * 8 7 6 11 11 S 1.81002 * 109.46981 * 180.02562 * 10 8 7 12 12 C 1.76201 * 99.99899 * 180.02562 * 11 10 8 13 13 H 1.07998 * 120.00422 * 0.02562 * 12 11 10 14 14 C 1.38802 * 119.99975 * 179.97438 * 12 11 10 15 15 N 1.31624 * 120.00141 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99878 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47325 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47036 * 120.00550 * 16 14 12 19 19 H 1.48505 * 109.47082 * 240.00147 * 16 14 12 20 20 N 1.46500 * 109.46998 * 119.99942 * 2 1 3 21 21 C 1.34773 * 119.99910 * 275.00232 * 20 2 1 22 22 O 1.21683 * 120.00267 * 359.97438 * 21 20 2 23 23 C 1.46725 * 120.00230 * 180.02562 * 21 20 2 24 24 C 1.36332 * 126.64822 * 180.02562 * 23 21 20 25 25 N 1.33693 * 107.45562 * 179.97438 * 24 23 21 26 26 C 1.30618 * 108.99252 * 359.97438 * 25 24 23 27 27 O 1.33657 * 109.15504 * 359.72808 * 26 25 24 28 28 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 29 29 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 31 31 H 1.08993 * 109.47322 * 295.00205 * 4 2 1 32 32 H 1.09002 * 109.47196 * 55.00329 * 4 2 1 33 33 H 1.08993 * 109.47331 * 300.00296 * 5 4 2 34 34 H 1.09001 * 109.46791 * 60.00740 * 5 4 2 35 35 H 1.09006 * 109.47271 * 300.00048 * 6 5 4 36 36 H 1.09002 * 109.47196 * 60.00425 * 6 5 4 37 37 H 0.97002 * 119.99507 * 0.02562 * 7 6 5 38 38 H 1.08995 * 109.47714 * 300.00282 * 10 8 7 39 39 H 1.09001 * 109.46900 * 60.00687 * 10 8 7 40 40 H 0.96999 * 120.00216 * 179.97438 * 15 14 12 41 41 H 0.96995 * 120.00293 * 94.99410 * 20 2 1 42 42 H 1.08007 * 126.27491 * 0.02907 * 24 23 21 43 43 H 1.08000 * 125.41709 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 6 4.0749 -1.3351 -2.5625 7 7 5.5351 -1.2323 -2.6239 8 6 6.2080 -1.7976 -3.6456 9 8 5.6049 -2.3910 -4.5145 10 6 7.7099 -1.6912 -3.7091 11 16 8.3132 -2.5440 -5.1872 12 6 10.0451 -2.2700 -5.0132 13 1 10.4214 -1.7132 -4.1677 14 6 10.9257 -2.7705 -5.9621 15 7 10.4672 -3.4495 -6.9922 16 14 12.7618 -2.4805 -5.7771 17 1 13.0172 -1.6957 -4.5426 18 1 13.4626 -3.7866 -5.6867 19 1 13.2654 -1.7292 -6.9549 20 7 2.0184 -0.6906 1.1962 21 6 2.1470 -0.0182 2.3571 22 8 1.8580 1.1625 2.4117 23 6 2.6366 -0.7097 3.5551 24 6 2.8175 -0.1656 4.7919 25 7 3.2747 -1.1335 5.5929 26 6 3.3805 -2.2393 4.9058 27 8 2.9891 -2.0132 3.6480 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.7517 -1.7715 -1.2055 32 1 1.6055 -0.2618 -2.1370 33 1 3.8532 0.4369 -1.3573 34 1 3.9995 -1.0729 -0.4259 35 1 3.7866 -2.3854 -2.5183 36 1 3.6404 -0.8760 -3.4505 37 1 6.0174 -0.7573 -1.9292 38 1 7.9984 -0.6411 -3.7528 39 1 8.1445 -2.1508 -2.8213 40 1 11.0826 -3.7990 -7.6555 41 1 2.2490 -1.6317 1.1527 42 1 2.6257 0.8594 5.0734 43 1 3.7254 -3.1865 5.2935 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280874821.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:32 Heat of formation + Delta-G solvation = -63.296684 kcal Electronic energy + Delta-G solvation = -25590.465721 eV Core-core repulsion = 21570.419484 eV Total energy + Delta-G solvation = -4020.046238 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.97195 -40.30367 -39.20097 -37.27318 -35.54841 -35.02348 -32.86352 -32.44465 -31.44803 -30.39622 -29.14170 -26.12965 -25.45330 -24.83691 -23.30646 -22.24645 -21.67160 -21.13428 -20.31096 -19.08223 -17.84526 -17.46255 -17.38343 -16.94777 -16.27738 -15.94487 -15.73281 -15.31856 -14.91423 -14.85418 -14.81841 -14.52853 -14.18598 -13.99583 -13.83308 -13.57191 -13.09689 -12.87068 -12.72754 -12.59307 -12.07733 -11.97154 -11.86461 -11.80082 -11.45202 -11.31307 -11.14639 -11.08080 -11.03518 -10.78024 -10.76206 -9.86566 -9.81987 -9.56923 -9.41967 -9.09455 -8.91861 -8.25112 -6.51831 -6.23402 -3.93965 0.26487 1.87104 1.89289 2.55952 2.60643 3.01118 3.07540 3.20373 3.27019 3.31624 3.59481 3.67444 4.11830 4.18823 4.29609 4.37210 4.47752 4.53066 4.81213 4.91040 4.93416 5.00862 5.04122 5.11876 5.16736 5.20977 5.27611 5.29873 5.45657 5.55540 5.61136 5.65021 5.74710 5.75715 5.87340 5.92734 5.94019 6.12032 6.58624 6.73953 7.00938 7.46944 7.58392 7.67585 8.33905 8.58717 9.22110 10.84085 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013711 B = 0.001773 C = 0.001621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.679280 B =15790.840699 C =17270.523887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.141 3.859 3 H 0.095 0.905 4 C -0.125 4.125 5 C -0.132 4.132 6 C 0.121 3.879 7 N -0.741 5.741 8 C 0.531 3.469 9 O -0.518 6.518 10 C -0.154 4.154 11 S -0.061 6.061 12 C -0.535 4.535 13 H 0.073 0.927 14 C 0.073 3.927 15 N -0.867 5.867 16 Si 0.919 3.081 17 H -0.272 1.272 18 H -0.280 1.280 19 H -0.280 1.280 20 N -0.711 5.711 21 C 0.610 3.390 22 O -0.514 6.514 23 C -0.113 4.113 24 C 0.055 3.945 25 N -0.495 5.495 26 C 0.205 3.795 27 O -0.191 6.191 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.398 0.602 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.268 0.732 41 H 0.406 0.594 42 H 0.197 0.803 43 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.072 4.992 22.582 30.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.038 3.962 3 H 0.113 0.887 4 C -0.163 4.163 5 C -0.170 4.170 6 C -0.003 4.003 7 N -0.395 5.395 8 C 0.317 3.683 9 O -0.392 6.392 10 C -0.304 4.304 11 S 0.165 5.835 12 C -0.683 4.683 13 H 0.091 0.909 14 C -0.137 4.137 15 N -0.503 5.503 16 Si 0.745 3.255 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.205 1.205 20 N -0.362 5.362 21 C 0.395 3.605 22 O -0.391 6.391 23 C -0.169 4.169 24 C -0.088 4.088 25 N -0.223 5.223 26 C -0.020 4.020 27 O -0.077 6.077 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.107 0.893 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.231 0.769 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.078 0.922 41 H 0.241 0.759 42 H 0.214 0.786 43 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -21.116 4.745 21.541 30.535 hybrid contribution 2.141 0.417 0.897 2.359 sum -18.974 5.162 22.438 29.835 Atomic orbital electron populations 1.22192 0.94610 1.02526 1.03013 1.21134 0.94374 0.97739 0.83002 0.88700 1.21843 0.95383 1.01754 0.97370 1.21818 0.95525 1.01624 0.98048 1.21265 0.80665 1.00693 0.97700 1.46012 1.07120 1.58737 1.27645 1.20313 0.89521 0.77710 0.80741 1.90701 1.69912 1.40824 1.37800 1.23533 0.93595 1.05850 1.07461 1.85394 1.04660 1.69648 1.23748 1.22907 0.91483 1.41082 1.12837 0.90878 1.25002 0.99633 0.94532 0.94484 1.70024 1.35322 1.33801 1.11124 0.86110 0.82943 0.78143 0.78256 1.19623 1.20560 1.20547 1.46040 1.66428 1.14427 1.09346 1.16328 0.77654 0.85607 0.80872 1.90917 1.50434 1.13997 1.83769 1.23215 1.12203 0.82447 0.99010 1.23656 0.96828 1.00614 0.87736 1.70494 1.18141 0.99644 1.34029 1.28508 0.95810 1.00455 0.77225 1.84508 1.62529 1.27049 1.33626 0.90994 0.92187 0.91944 0.90652 0.89304 0.90936 0.91328 0.91688 0.91556 0.76876 0.89225 0.89265 0.92226 0.75864 0.78574 0.72643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.89 9.48 37.16 0.35 -0.54 16 2 C 0.14 0.81 2.57 -67.93 -0.17 0.64 16 3 H 0.09 0.68 7.58 -51.93 -0.39 0.28 16 4 C -0.13 -0.63 4.75 -26.73 -0.13 -0.76 16 5 C -0.13 -0.88 5.22 -26.73 -0.14 -1.02 16 6 C 0.12 1.25 5.67 -4.04 -0.02 1.22 16 7 N -0.74 -9.43 5.56 -60.29 -0.33 -9.76 16 8 C 0.53 9.76 7.85 -10.99 -0.09 9.67 16 9 O -0.52 -11.65 15.86 5.56 0.09 -11.57 16 10 C -0.15 -3.07 6.16 36.01 0.22 -2.85 16 11 S -0.06 -1.65 20.57 -107.50 -2.21 -3.87 16 12 C -0.53 -15.20 9.50 30.94 0.29 -14.91 16 13 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 14 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 15 N -0.87 -26.09 13.22 55.49 0.73 -25.35 16 16 Si 0.92 21.34 29.55 -169.99 -5.02 16.32 16 17 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 N -0.71 -4.29 4.53 -55.10 -0.25 -4.54 16 21 C 0.61 5.10 7.75 -12.83 -0.10 5.00 16 22 O -0.51 -5.76 16.55 5.20 0.09 -5.68 16 23 C -0.11 -0.87 7.18 -36.84 -0.26 -1.14 16 24 C 0.05 0.43 11.66 -17.43 -0.20 0.22 16 25 N -0.50 -3.85 11.26 -14.67 -0.17 -4.01 16 26 C 0.20 0.99 13.21 52.25 0.69 1.68 16 27 O -0.19 -1.18 10.57 4.43 0.05 -1.14 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.44 7.75 -51.93 -0.40 0.03 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.40 3.95 8.47 -40.82 -0.35 3.61 16 38 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 39 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 40 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.41 1.85 8.40 -40.82 -0.34 1.51 16 42 H 0.20 1.28 8.06 -52.48 -0.42 0.85 16 43 H 0.26 -0.05 8.06 -52.49 -0.42 -0.47 16 LS Contribution 391.34 15.07 5.90 5.90 Total: -1.00 -37.97 391.34 -6.89 -44.86 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -6.10 Total: -0.38 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: 0.34 Total: -0.79 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: -0.02 Total: -43.66 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: 0.22 Total: -18.38 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -37.97 -6.89 -44.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280874821.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.439 kcal (2) G-P(sol) polarization free energy of solvation -37.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds