Wall clock time and date at job start Tue Mar 31 2020 23:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99728 * 2 1 3 5 5 C 1.53001 * 109.46997 * 174.99904 * 4 2 1 6 6 C 1.52997 * 109.46997 * 179.97438 * 5 4 2 7 7 N 1.46503 * 109.47269 * 180.02562 * 6 5 4 8 8 C 1.34771 * 120.00040 * 180.02562 * 7 6 5 9 9 O 1.21280 * 120.00244 * 0.02562 * 8 7 6 10 10 C 1.50701 * 119.99782 * 179.97438 * 8 7 6 11 11 S 1.81002 * 109.46981 * 180.02562 * 10 8 7 12 12 C 1.76201 * 99.99899 * 180.02562 * 11 10 8 13 13 H 1.07998 * 120.00422 * 0.02562 * 12 11 10 14 14 C 1.38802 * 119.99975 * 179.97438 * 12 11 10 15 15 N 1.31624 * 120.00141 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99878 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47325 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47036 * 120.00550 * 16 14 12 19 19 H 1.48505 * 109.47082 * 240.00147 * 16 14 12 20 20 N 1.46500 * 109.46998 * 119.99942 * 2 1 3 21 21 C 1.34773 * 119.99910 * 275.00232 * 20 2 1 22 22 O 1.21683 * 120.00267 * 359.97438 * 21 20 2 23 23 C 1.46725 * 120.00230 * 180.02562 * 21 20 2 24 24 C 1.36332 * 126.64822 * 180.02562 * 23 21 20 25 25 N 1.33693 * 107.45562 * 179.97438 * 24 23 21 26 26 C 1.30618 * 108.99252 * 359.97438 * 25 24 23 27 27 O 1.33657 * 109.15504 * 359.72808 * 26 25 24 28 28 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 29 29 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 31 31 H 1.08993 * 109.47322 * 295.00205 * 4 2 1 32 32 H 1.09002 * 109.47196 * 55.00329 * 4 2 1 33 33 H 1.08993 * 109.47331 * 300.00296 * 5 4 2 34 34 H 1.09001 * 109.46791 * 60.00740 * 5 4 2 35 35 H 1.09006 * 109.47271 * 300.00048 * 6 5 4 36 36 H 1.09002 * 109.47196 * 60.00425 * 6 5 4 37 37 H 0.97002 * 119.99507 * 0.02562 * 7 6 5 38 38 H 1.08995 * 109.47714 * 300.00282 * 10 8 7 39 39 H 1.09001 * 109.46900 * 60.00687 * 10 8 7 40 40 H 0.96999 * 120.00216 * 179.97438 * 15 14 12 41 41 H 0.96995 * 120.00293 * 94.99410 * 20 2 1 42 42 H 1.08007 * 126.27491 * 0.02907 * 24 23 21 43 43 H 1.08000 * 125.41709 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 6 4.0749 -1.3351 -2.5625 7 7 5.5351 -1.2323 -2.6239 8 6 6.2080 -1.7976 -3.6456 9 8 5.6049 -2.3910 -4.5145 10 6 7.7099 -1.6912 -3.7091 11 16 8.3132 -2.5440 -5.1872 12 6 10.0451 -2.2700 -5.0132 13 1 10.4214 -1.7132 -4.1677 14 6 10.9257 -2.7705 -5.9621 15 7 10.4672 -3.4495 -6.9922 16 14 12.7618 -2.4805 -5.7771 17 1 13.0172 -1.6957 -4.5426 18 1 13.4626 -3.7866 -5.6867 19 1 13.2654 -1.7292 -6.9549 20 7 2.0184 -0.6906 1.1962 21 6 2.1470 -0.0182 2.3571 22 8 1.8580 1.1625 2.4117 23 6 2.6366 -0.7097 3.5551 24 6 2.8175 -0.1656 4.7919 25 7 3.2747 -1.1335 5.5929 26 6 3.3805 -2.2393 4.9058 27 8 2.9891 -2.0132 3.6480 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.7517 -1.7715 -1.2055 32 1 1.6055 -0.2618 -2.1370 33 1 3.8532 0.4369 -1.3573 34 1 3.9995 -1.0729 -0.4259 35 1 3.7866 -2.3854 -2.5183 36 1 3.6404 -0.8760 -3.4505 37 1 6.0174 -0.7573 -1.9292 38 1 7.9984 -0.6411 -3.7528 39 1 8.1445 -2.1508 -2.8213 40 1 11.0826 -3.7990 -7.6555 41 1 2.2490 -1.6317 1.1527 42 1 2.6257 0.8594 5.0734 43 1 3.7254 -3.1865 5.2935 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280874821.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:31 Heat of formation + Delta-G solvation = -94.339954 kcal Electronic energy + Delta-G solvation = -25591.811859 eV Core-core repulsion = 21570.419484 eV Total energy + Delta-G solvation = -4021.392375 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.44825 -40.92572 -40.56121 -37.93456 -36.21734 -35.87715 -34.59041 -33.64687 -32.22237 -31.07056 -30.32660 -27.72206 -26.77897 -25.39516 -23.78301 -22.92805 -22.28594 -21.76244 -21.52226 -19.82167 -19.59882 -17.93732 -17.88089 -17.75612 -17.54550 -17.09616 -16.88363 -16.77510 -15.94119 -15.82788 -15.76477 -15.34295 -15.24884 -14.76163 -14.73389 -14.49490 -14.37129 -13.99651 -13.83741 -13.25480 -13.16438 -13.12594 -12.91179 -12.63447 -12.59266 -12.54131 -12.36037 -12.01073 -11.92355 -11.72613 -11.66904 -11.38469 -11.16308 -10.95589 -10.43543 -10.27858 -10.10826 -10.05128 -8.67113 -8.35326 -6.13249 -0.24512 1.27278 1.39146 1.40907 1.41181 1.47322 1.58433 1.61549 1.97054 2.12647 2.25834 2.31533 2.98869 3.27269 3.31742 3.57284 3.77387 3.86076 3.90647 3.99999 4.05299 4.25250 4.29998 4.39903 4.43033 4.50172 4.50949 4.60075 4.67690 4.72184 4.79946 4.90232 5.02259 5.13547 5.18759 5.26146 5.32730 5.41802 5.42793 5.47796 6.19642 6.23299 6.50742 6.53286 6.92025 7.06190 7.24876 8.74109 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013711 B = 0.001773 C = 0.001621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.679280 B =15790.840699 C =17270.523887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.144 3.856 3 H 0.082 0.918 4 C -0.117 4.117 5 C -0.120 4.120 6 C 0.119 3.881 7 N -0.715 5.715 8 C 0.532 3.468 9 O -0.567 6.567 10 C -0.131 4.131 11 S -0.152 6.152 12 C -0.545 4.545 13 H 0.082 0.918 14 C 0.012 3.988 15 N -0.911 5.911 16 Si 0.999 3.001 17 H -0.257 1.257 18 H -0.273 1.273 19 H -0.274 1.274 20 N -0.699 5.699 21 C 0.610 3.390 22 O -0.551 6.551 23 C -0.128 4.128 24 C 0.046 3.954 25 N -0.530 5.530 26 C 0.226 3.774 27 O -0.191 6.191 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.044 0.956 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.415 0.585 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.271 0.729 41 H 0.415 0.585 42 H 0.199 0.801 43 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.517 4.994 24.392 31.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.100 0.900 4 C -0.156 4.156 5 C -0.158 4.158 6 C -0.004 4.004 7 N -0.369 5.369 8 C 0.318 3.682 9 O -0.445 6.445 10 C -0.282 4.282 11 S 0.075 5.925 12 C -0.693 4.693 13 H 0.100 0.900 14 C -0.193 4.193 15 N -0.547 5.547 16 Si 0.821 3.179 17 H -0.181 1.181 18 H -0.199 1.199 19 H -0.200 1.200 20 N -0.350 5.350 21 C 0.396 3.604 22 O -0.431 6.431 23 C -0.183 4.183 24 C -0.097 4.097 25 N -0.258 5.258 26 C 0.002 3.998 27 O -0.077 6.077 28 H 0.101 0.899 29 H 0.087 0.913 30 H 0.063 0.937 31 H 0.105 0.895 32 H 0.115 0.885 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.252 0.748 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.080 0.920 41 H 0.252 0.748 42 H 0.216 0.784 43 H 0.319 0.681 Dipole moment (debyes) X Y Z Total from point charges -20.579 4.760 23.398 31.522 hybrid contribution 1.871 0.398 0.450 1.965 sum -18.708 5.159 23.848 30.746 Atomic orbital electron populations 1.22154 0.94159 1.02993 1.02661 1.21111 0.94667 0.97164 0.83024 0.90012 1.21790 0.94083 1.02500 0.97186 1.21731 0.96510 1.01279 0.96265 1.21450 0.78691 1.01026 0.99269 1.45799 1.08291 1.56710 1.26070 1.20047 0.88852 0.77871 0.81436 1.90689 1.70442 1.43387 1.39986 1.23385 0.94953 1.05837 1.04036 1.85562 1.05865 1.71785 1.29261 1.23232 0.91658 1.41171 1.13264 0.89956 1.26137 1.05241 0.93963 0.93912 1.70184 1.37334 1.35012 1.12202 0.84899 0.75876 0.78343 0.78782 1.18076 1.19884 1.19955 1.45994 1.65480 1.14752 1.08797 1.16418 0.77285 0.85243 0.81477 1.90893 1.52246 1.15532 1.84413 1.23021 1.13429 0.83144 0.98718 1.23813 0.96711 1.01060 0.88089 1.70511 1.19765 1.00622 1.34876 1.29598 0.92890 1.01098 0.76262 1.84515 1.62662 1.26181 1.34306 0.89948 0.91275 0.93721 0.89470 0.88503 0.90600 0.90516 0.92050 0.92308 0.74842 0.87355 0.87237 0.91980 0.74782 0.78433 0.68107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 9.48 71.98 0.68 -0.85 16 2 C 0.14 1.44 2.57 44.99 0.12 1.55 16 3 H 0.08 1.09 7.58 -2.39 -0.02 1.07 16 4 C -0.12 -0.90 4.75 30.59 0.15 -0.75 16 5 C -0.12 -1.28 5.22 30.59 0.16 -1.12 16 6 C 0.12 2.22 5.67 86.38 0.49 2.71 16 7 N -0.71 -16.65 5.56 -463.06 -2.57 -19.22 16 8 C 0.53 19.05 7.85 87.66 0.69 19.74 16 9 O -0.57 -25.73 15.86 -3.03 -0.05 -25.78 16 10 C -0.13 -5.09 6.16 71.24 0.44 -4.65 16 11 S -0.15 -8.38 20.57 -56.49 -1.16 -9.54 16 12 C -0.55 -30.99 9.50 67.95 0.65 -30.35 16 13 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 14 C 0.01 0.69 5.49 84.86 0.47 1.16 16 15 N -0.91 -55.72 13.22 21.65 0.29 -55.43 16 16 Si 1.00 43.37 29.55 68.60 2.03 45.40 16 17 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 18 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 19 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 20 N -0.70 -7.43 4.53 -446.46 -2.02 -9.45 16 21 C 0.61 9.91 7.75 86.46 0.67 10.58 16 22 O -0.55 -12.56 16.55 -4.29 -0.07 -12.63 16 23 C -0.13 -1.87 7.18 24.04 0.17 -1.70 16 24 C 0.05 0.71 11.66 83.96 0.98 1.69 16 25 N -0.53 -7.61 11.26 -315.10 -3.55 -11.16 16 26 C 0.23 1.64 13.21 130.42 1.72 3.36 16 27 O -0.19 -1.98 10.57 -7.08 -0.07 -2.06 16 28 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.08 0.74 7.75 -2.39 -0.02 0.72 16 35 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 36 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.41 6.96 8.47 -92.71 -0.79 6.17 16 38 H 0.11 3.80 8.14 -2.40 -0.02 3.79 16 39 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 40 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 41 H 0.42 2.90 8.40 -92.71 -0.78 2.12 16 42 H 0.20 2.72 8.06 -2.91 -0.02 2.70 16 43 H 0.30 -1.32 8.06 -2.91 -0.02 -1.35 16 Total: -1.00 -85.59 391.34 -0.32 -85.91 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -0.51 Total: 12.59 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: 7.38 Total: 1.37 kcal Atomic # 7 Polarization: -87.41 SS G_CDS: -7.85 Total: -95.26 kcal Atomic # 8 Polarization: -40.27 SS G_CDS: -0.19 Total: -40.46 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 16 Polarization: -8.38 SS G_CDS: -1.16 Total: -9.54 kcal Total: -85.59 -0.32 -85.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280874821.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.428 kcal (2) G-P(sol) polarization free energy of solvation -85.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds