Wall clock time and date at job start Tue Mar 31 2020 23:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47209 * 2 1 4 4 C 1.53005 * 109.47204 * 239.99854 * 2 1 3 5 5 C 1.52993 * 109.47294 * 174.99902 * 4 2 1 6 6 N 1.46502 * 109.47132 * 179.97438 * 5 4 2 7 7 C 1.34774 * 120.00100 * 180.02562 * 6 5 4 8 8 O 1.21286 * 119.99824 * 359.97438 * 7 6 5 9 9 C 1.50692 * 120.00230 * 180.02562 * 7 6 5 10 10 C 1.50702 * 109.47454 * 179.97438 * 9 7 6 11 11 C 1.41379 * 126.80093 * 124.70578 * 10 9 7 12 12 C 1.35446 * 103.98652 * 180.26598 * 11 10 9 13 13 O 1.34044 * 106.44743 * 0.02562 * 12 11 10 14 14 N 1.20918 * 111.56370 * 359.97438 * 13 12 11 15 15 N 1.46498 * 109.46840 * 120.00145 * 2 1 3 16 16 C 1.34780 * 119.99923 * 274.99408 * 15 2 1 17 17 O 1.21280 * 120.00086 * 0.02562 * 16 15 2 18 18 C 1.50696 * 120.00079 * 180.02562 * 16 15 2 19 19 S 1.80999 * 109.47503 * 180.02562 * 18 16 15 20 20 C 1.76187 * 100.00459 * 179.97438 * 19 18 16 21 21 H 1.07999 * 120.00162 * 359.97438 * 20 19 18 22 22 C 1.38796 * 120.00272 * 180.02562 * 20 19 18 23 23 N 1.31629 * 120.00095 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 120.00202 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47141 * 59.99842 * 24 22 20 26 26 H 1.48507 * 109.46993 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.46886 * 299.99675 * 24 22 20 28 28 H 1.09002 * 109.46844 * 300.00220 * 1 2 3 29 29 H 1.09007 * 109.46966 * 59.99749 * 1 2 3 30 30 H 1.08994 * 109.47095 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46614 * 54.99877 * 4 2 1 32 32 H 1.08997 * 109.46724 * 295.00490 * 4 2 1 33 33 H 1.09011 * 109.47155 * 60.00166 * 5 4 2 34 34 H 1.08996 * 109.47734 * 300.00537 * 5 4 2 35 35 H 0.97002 * 120.00007 * 359.97438 * 6 5 4 36 36 H 1.09006 * 109.47404 * 59.99571 * 9 7 6 37 37 H 1.08999 * 109.47380 * 299.99809 * 9 7 6 38 38 H 1.08001 * 128.00721 * 0.25149 * 11 10 9 39 39 H 1.08004 * 126.77907 * 179.97438 * 12 11 10 40 40 H 0.97005 * 120.00387 * 95.00337 * 15 2 1 41 41 H 1.09007 * 109.46962 * 300.00037 * 18 16 15 42 42 H 1.09001 * 109.47539 * 59.99883 * 18 16 15 43 43 H 0.97001 * 120.00252 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 7 4.0532 -1.3045 -2.5096 7 6 5.3741 -1.3408 -2.7747 8 8 6.1584 -0.8009 -2.0235 9 6 5.8764 -2.0513 -4.0051 10 6 7.3783 -1.9451 -4.0686 11 6 8.2995 -3.0131 -4.1658 12 6 9.5083 -2.4023 -4.1838 13 8 9.2695 -1.0858 -4.1013 14 7 8.0848 -0.8521 -4.0385 15 7 2.0183 -0.6906 1.1962 16 6 2.1471 -0.0183 2.3571 17 8 1.8583 1.1584 2.4117 18 6 2.6499 -0.7285 3.5874 19 16 2.7100 0.4342 4.9732 20 6 3.3131 -0.6309 6.2405 21 1 3.5225 -1.6673 6.0206 22 6 3.5182 -0.1383 7.5218 23 7 3.2626 1.1247 7.7901 24 14 4.1583 -1.2675 8.8653 25 1 5.4856 -1.8038 8.4704 26 1 4.2904 -0.5041 10.1323 27 1 3.2083 -2.3919 9.0611 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.6054 -0.2618 -2.1370 32 1 1.7516 -1.7715 -1.2056 33 1 3.9995 -1.0729 -0.4259 34 1 3.8532 0.4369 -1.3573 35 1 3.4259 -1.7367 -3.1102 36 1 5.4421 -1.5916 -4.8929 37 1 5.5876 -3.1014 -3.9616 38 1 8.0883 -4.0712 -4.2143 39 1 10.4740 -2.8813 -4.2504 40 1 2.2490 -1.6318 1.1526 41 1 1.9775 -1.5508 3.8325 42 1 3.6491 -1.1205 3.3979 43 1 3.4063 1.4691 8.6855 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284423214.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:01 Heat of formation + Delta-G solvation = -21.371979 kcal Electronic energy + Delta-G solvation = -25789.402778 eV Core-core repulsion = 21771.174532 eV Total energy + Delta-G solvation = -4018.228246 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.23303 -40.07094 -39.36732 -36.69298 -35.01258 -34.63808 -32.40554 -32.10762 -31.86861 -30.43831 -28.80726 -28.37377 -25.46145 -23.99971 -23.45125 -22.00572 -21.61420 -20.51250 -20.31234 -18.15660 -18.01127 -17.80920 -17.16364 -16.63429 -16.40393 -15.99173 -15.87140 -15.14982 -14.89130 -14.78365 -14.53863 -14.07382 -13.97146 -13.71171 -13.52773 -13.37389 -13.19604 -12.90447 -12.77704 -12.61953 -12.15152 -11.93951 -11.75598 -11.58956 -11.53389 -11.09693 -11.02153 -11.01456 -10.74601 -10.58993 -10.10700 -9.93164 -9.80115 -9.41211 -9.37021 -9.04146 -8.90828 -8.21463 -6.47202 -6.19034 -3.89465 1.23164 1.83715 2.32351 2.80268 2.98629 3.04682 3.11365 3.25385 3.29190 3.32813 3.70354 3.72506 4.12125 4.22891 4.40122 4.45579 4.65413 4.71321 4.72225 4.79186 4.86117 5.07587 5.15877 5.16726 5.21610 5.30104 5.31410 5.34242 5.55147 5.61031 5.61335 5.67670 5.75384 5.91164 6.00080 6.06841 6.15451 6.17471 6.65721 7.10645 7.61572 7.70962 7.90215 7.99393 8.37418 8.63170 9.26042 10.88346 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010179 B = 0.002079 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2750.183547 B =13463.693093 C =15617.164060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.146 3.854 3 H 0.091 0.909 4 C -0.136 4.136 5 C 0.117 3.883 6 N -0.732 5.732 7 C 0.510 3.490 8 O -0.518 6.518 9 C -0.060 4.060 10 C 0.019 3.981 11 C -0.230 4.230 12 C -0.061 4.061 13 O 0.106 5.894 14 N -0.335 5.335 15 N -0.736 5.736 16 C 0.534 3.466 17 O -0.516 6.516 18 C -0.154 4.154 19 S -0.059 6.059 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.400 0.600 36 H 0.113 0.887 37 H 0.116 0.884 38 H 0.172 0.828 39 H 0.216 0.784 40 H 0.397 0.603 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.837 -13.000 -30.326 33.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.109 0.891 4 C -0.175 4.175 5 C -0.006 4.006 6 N -0.385 5.385 7 C 0.294 3.706 8 O -0.392 6.392 9 C -0.101 4.101 10 C -0.141 4.141 11 C -0.251 4.251 12 C -0.143 4.143 13 O 0.036 5.964 14 N -0.035 5.035 15 N -0.391 5.391 16 C 0.320 3.680 17 O -0.390 6.390 18 C -0.305 4.305 19 S 0.167 5.833 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.200 1.200 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.234 0.766 36 H 0.131 0.869 37 H 0.134 0.866 38 H 0.189 0.811 39 H 0.233 0.767 40 H 0.230 0.770 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.610 -9.147 -29.444 30.942 hybrid contribution 0.536 -3.839 0.475 3.905 sum 3.146 -12.986 -28.968 31.901 Atomic orbital electron populations 1.22172 0.94990 1.02079 1.02849 1.20780 0.94167 0.97778 0.83220 0.89068 1.22100 0.94487 1.02031 0.98844 1.21423 0.93595 0.98101 0.87517 1.45943 1.07230 1.57748 1.27558 1.20336 0.82415 0.80780 0.87041 1.90819 1.55108 1.44251 1.49000 1.19966 0.88510 1.03397 0.98218 1.22855 0.97262 0.89157 1.04828 1.22679 0.91595 1.01361 1.09502 1.26031 1.01516 0.83620 1.03089 1.84893 1.20110 1.25166 1.66222 1.73909 0.89248 1.24031 1.16360 1.46126 1.69535 1.13844 1.09582 1.20297 0.76721 0.87219 0.83764 1.90700 1.48193 1.15729 1.84376 1.23538 1.03651 1.04859 0.98442 1.85384 1.86252 1.12946 0.98693 1.22823 1.51108 0.98120 0.96358 0.91015 1.24991 0.95104 0.95548 0.97952 1.70007 1.45488 1.13214 1.21584 0.86227 0.79326 0.80003 0.79956 1.19939 1.20805 1.19961 0.91420 0.91869 0.92542 0.89730 0.90615 0.90864 0.91048 0.76640 0.86946 0.86573 0.81071 0.76702 0.76957 0.89285 0.89268 0.92138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.48 37.16 0.35 -1.25 16 2 C 0.15 1.55 2.57 -67.93 -0.17 1.38 16 3 H 0.09 1.19 7.58 -51.93 -0.39 0.80 16 4 C -0.14 -0.92 4.87 -26.73 -0.13 -1.05 16 5 C 0.12 1.08 5.56 -4.04 -0.02 1.06 16 6 N -0.73 -5.28 5.56 -60.30 -0.33 -5.61 16 7 C 0.51 5.20 7.82 -10.99 -0.09 5.12 16 8 O -0.52 -8.30 15.59 5.55 0.09 -8.21 16 9 C -0.06 -0.38 6.30 -29.04 -0.18 -0.57 16 10 C 0.02 0.18 6.11 -82.10 -0.50 -0.32 16 11 C -0.23 -1.52 11.12 -39.38 -0.44 -1.96 16 12 C -0.06 -0.38 12.30 29.74 0.37 -0.02 16 13 O 0.11 1.09 11.20 17.17 0.19 1.28 16 14 N -0.34 -4.15 11.46 33.42 0.38 -3.76 16 15 N -0.74 -9.40 4.53 -53.80 -0.24 -9.64 16 16 C 0.53 9.92 7.81 -10.99 -0.09 9.83 16 17 O -0.52 -11.69 15.53 5.56 0.09 -11.60 16 18 C -0.15 -3.16 6.16 36.00 0.22 -2.94 16 19 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 20 C -0.54 -15.51 9.50 30.94 0.29 -15.22 16 21 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 22 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 23 N -0.87 -26.55 13.22 55.49 0.73 -25.82 16 24 Si 0.92 21.74 29.55 -169.99 -5.02 16.71 16 25 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.83 7.75 -51.92 -0.40 0.43 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.40 1.33 8.47 -40.82 -0.35 0.98 16 36 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.12 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.17 0.58 8.06 -52.49 -0.42 0.16 16 39 H 0.22 0.34 8.06 -52.48 -0.42 -0.08 16 40 H 0.40 3.96 8.60 -40.82 -0.35 3.61 16 41 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 42 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 43 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 389.67 15.07 5.87 5.87 Total: -1.00 -41.27 389.67 -7.05 -48.33 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -6.11 Total: 0.21 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -0.48 Total: -3.91 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: 0.54 Total: -44.83 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: 0.37 Total: -18.53 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -41.27 -7.05 -48.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284423214.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.954 kcal (2) G-P(sol) polarization free energy of solvation -41.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds