Wall clock time and date at job start Tue Mar 31 2020 23:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47839 * 2 1 4 4 C 1.52997 * 109.46991 * 239.99553 * 2 1 3 5 5 N 1.46503 * 109.47269 * 65.00478 * 4 2 1 6 6 C 1.34771 * 120.00040 * 179.97438 * 5 4 2 7 7 O 1.21280 * 120.00244 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.99782 * 180.02562 * 6 5 4 9 9 S 1.81002 * 109.46981 * 179.97438 * 8 6 5 10 10 C 1.76201 * 99.99899 * 179.97438 * 9 8 6 11 11 H 1.08003 * 119.99782 * 359.97438 * 10 9 8 12 12 C 1.38802 * 119.99975 * 180.02562 * 10 9 8 13 13 N 1.31631 * 119.99843 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99878 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47111 * 89.99771 * 14 12 10 16 16 H 1.48501 * 109.46959 * 209.99446 * 14 12 10 17 17 H 1.48493 * 109.47056 * 329.99873 * 14 12 10 18 18 C 1.53006 * 109.46626 * 119.99931 * 2 1 3 19 19 N 1.46495 * 109.47168 * 294.99682 * 18 2 1 20 20 C 1.34776 * 120.00166 * 180.02562 * 19 18 2 21 21 O 1.21282 * 119.99629 * 359.97438 * 20 19 18 22 22 C 1.50703 * 120.00146 * 179.97438 * 20 19 18 23 23 C 1.50696 * 109.46759 * 179.97438 * 22 20 19 24 24 C 1.41380 * 126.80118 * 124.71482 * 23 22 20 25 25 C 1.35451 * 103.98919 * 179.88504 * 24 23 22 26 26 O 1.34041 * 106.44189 * 0.36592 * 25 24 23 27 27 N 1.20923 * 111.56917 * 359.75184 * 26 25 24 28 28 H 1.09000 * 109.47160 * 300.00438 * 1 2 3 29 29 H 1.09002 * 109.46719 * 60.00158 * 1 2 3 30 30 H 1.08993 * 109.47839 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47196 * 185.00356 * 4 2 1 32 32 H 1.09001 * 109.47630 * 305.00452 * 4 2 1 33 33 H 0.97002 * 119.99507 * 359.97438 * 5 4 2 34 34 H 1.09001 * 109.46900 * 299.99312 * 8 6 5 35 35 H 1.08993 * 109.47208 * 59.99748 * 8 6 5 36 36 H 0.97001 * 119.99324 * 179.97438 * 13 12 10 37 37 H 1.09000 * 109.47314 * 54.99967 * 18 2 1 38 38 H 1.09007 * 109.46744 * 174.99588 * 18 2 1 39 39 H 0.97003 * 120.00137 * 359.97438 * 19 18 2 40 40 H 1.08993 * 109.46956 * 300.00030 * 22 20 19 41 41 H 1.08996 * 109.46818 * 60.00091 * 22 20 19 42 42 H 1.08007 * 128.00396 * 0.02562 * 24 23 22 43 43 H 1.08000 * 126.77610 * 180.09655 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 1.6525 0.0352 -2.4424 6 6 1.9965 -0.4133 -3.6658 7 8 2.6272 -1.4430 -3.7791 8 6 1.5984 0.3653 -4.8932 9 16 2.2028 -0.4874 -6.3709 10 6 1.6133 0.6080 -7.6189 11 1 1.0599 1.4934 -7.3427 12 6 1.8592 0.3324 -8.9568 13 7 2.5332 -0.7470 -9.2934 14 14 1.2335 1.4933 -10.2799 15 1 2.2635 2.5257 -10.5599 16 1 0.9524 0.7255 -11.5195 17 1 -0.0126 2.1515 -9.8119 18 6 2.0399 -0.7213 1.2493 19 7 1.6523 0.0354 2.4424 20 6 1.9962 -0.4130 3.6660 21 8 2.6262 -1.4432 3.7793 22 6 1.5981 0.3656 4.8933 23 6 2.1002 -0.3449 6.1237 24 6 2.9212 0.1973 7.1390 25 6 3.0851 -0.8274 8.0096 26 8 2.4072 -1.8672 7.5037 27 7 1.8686 -1.5810 6.4595 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1263 -0.7996 -1.2055 32 1 1.6053 -1.7199 -1.2951 33 1 1.1483 0.8590 -2.3518 34 1 0.5121 0.4435 -4.9373 35 1 2.0330 1.3637 -4.8469 36 1 2.7047 -0.9397 -10.2285 37 1 1.6052 -1.7198 1.2953 38 1 3.1263 -0.7996 1.2057 39 1 1.1488 0.8595 2.3517 40 1 2.0328 1.3641 4.8469 41 1 0.5118 0.4440 4.9372 42 1 3.3226 1.1977 7.2062 43 1 3.6538 -0.8112 8.9276 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001285206418.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:52 Heat of formation + Delta-G solvation = -22.000035 kcal Electronic energy + Delta-G solvation = -25251.003005 eV Core-core repulsion = 21232.747524 eV Total energy + Delta-G solvation = -4018.255481 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.32260 -40.20778 -39.28080 -37.17582 -35.06250 -34.56994 -32.51669 -32.43144 -32.11695 -30.09526 -29.30316 -27.11652 -25.66564 -25.20190 -23.56160 -22.24744 -21.08751 -20.54620 -20.34168 -18.23717 -18.10507 -17.84276 -17.23855 -16.78988 -16.24703 -16.13656 -15.81850 -15.46074 -15.11694 -14.81284 -14.68436 -14.18325 -13.96265 -13.79094 -13.76969 -13.38497 -13.23880 -13.14331 -12.94933 -12.66772 -12.56120 -11.94302 -11.68487 -11.59777 -11.40715 -11.26398 -11.07262 -11.03466 -10.77415 -10.68625 -10.22303 -10.02337 -9.82736 -9.49532 -9.43369 -9.08121 -8.92040 -8.24572 -6.51110 -6.22564 -3.93317 1.13936 1.74970 2.22192 2.66868 2.88902 3.05657 3.08089 3.21432 3.27392 3.31543 3.61792 3.69903 4.04065 4.19390 4.29530 4.40704 4.47008 4.50047 4.62284 4.70863 4.77962 4.99354 5.00776 5.11968 5.12677 5.22140 5.28062 5.33479 5.42436 5.52012 5.54772 5.60651 5.66118 5.85123 5.87143 5.89740 5.99690 6.11525 6.56565 7.01195 7.58343 7.66473 7.79405 7.90198 8.34066 8.59011 9.22691 10.84870 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.048534 B = 0.001350 C = 0.001332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.775442 B =20730.413457 C =21012.370130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 H 0.085 0.915 4 C 0.128 3.872 5 N -0.738 5.738 6 C 0.531 3.469 7 O -0.516 6.516 8 C -0.153 4.153 9 S -0.060 6.060 10 C -0.536 4.536 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 C 0.127 3.873 19 N -0.728 5.728 20 C 0.513 3.487 21 O -0.522 6.522 22 C -0.061 4.061 23 C 0.020 3.980 24 C -0.230 4.230 25 C -0.061 4.061 26 O 0.105 5.895 27 N -0.336 5.336 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.397 0.603 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.268 0.732 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.401 0.599 40 H 0.117 0.883 41 H 0.113 0.887 42 H 0.172 0.828 43 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.647 8.344 34.955 36.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.133 4.133 3 H 0.103 0.897 4 C 0.003 3.997 5 N -0.393 5.393 6 C 0.317 3.683 7 O -0.390 6.390 8 C -0.304 4.304 9 S 0.167 5.833 10 C -0.685 4.685 11 H 0.091 0.909 12 C -0.135 4.135 13 N -0.502 5.502 14 Si 0.745 3.255 15 H -0.203 1.203 16 H -0.207 1.207 17 H -0.197 1.197 18 C 0.003 3.997 19 N -0.382 5.382 20 C 0.297 3.703 21 O -0.396 6.396 22 C -0.102 4.102 23 C -0.140 4.140 24 C -0.251 4.251 25 C -0.143 4.143 26 O 0.035 5.965 27 N -0.036 5.036 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.231 0.769 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.235 0.765 40 H 0.135 0.865 41 H 0.131 0.869 42 H 0.189 0.811 43 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -2.751 4.721 34.117 34.552 hybrid contribution -1.131 3.656 -0.503 3.860 sum -3.882 8.377 33.614 34.859 Atomic orbital electron populations 1.21896 0.93977 1.02943 1.01956 1.21590 0.97126 1.00706 0.93898 0.89688 1.21166 1.00312 0.95440 0.82743 1.45964 1.59739 1.28129 1.05476 1.20312 0.78710 0.85500 0.83773 1.90714 1.38249 1.23860 1.86161 1.23527 1.04789 1.03434 0.98639 1.85428 1.72740 1.33020 0.92162 1.22868 1.41514 1.11288 0.92799 0.90938 1.24991 0.94853 0.95772 0.97926 1.70021 1.37462 1.24563 1.18197 0.86169 0.79079 0.80071 0.80182 1.20269 1.20733 1.19711 1.21309 1.00587 0.95433 0.82403 1.45913 1.58512 1.28042 1.05684 1.20312 0.79842 0.85863 0.84268 1.90790 1.38708 1.23774 1.86375 1.19973 1.03488 0.99069 0.87666 1.22847 1.01165 0.91254 0.98690 1.22694 1.04366 1.02510 0.95554 1.26031 0.99849 0.86665 1.01730 1.84890 1.48304 1.36109 1.27162 1.73910 1.15628 1.16047 0.98038 0.92536 0.91843 0.91892 0.91239 0.91152 0.76861 0.89239 0.89243 0.92165 0.90781 0.90855 0.76452 0.86504 0.86865 0.81050 0.76699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 8.94 37.16 0.33 -0.57 16 2 C -0.11 -0.76 2.46 -90.62 -0.22 -0.98 16 3 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 4 C 0.13 1.37 5.06 -4.04 -0.02 1.35 16 5 N -0.74 -9.12 5.28 -60.29 -0.32 -9.44 16 6 C 0.53 9.68 7.85 -10.99 -0.09 9.59 16 7 O -0.52 -11.69 15.86 5.56 0.09 -11.60 16 8 C -0.15 -3.03 6.16 36.01 0.22 -2.81 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 10 C -0.54 -15.21 9.50 30.94 0.29 -14.91 16 11 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 12 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 13 N -0.87 -26.13 13.22 55.49 0.73 -25.39 16 14 Si 0.92 21.28 29.55 -169.99 -5.02 16.25 16 15 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 18 C 0.13 0.98 5.06 -4.04 -0.02 0.96 16 19 N -0.73 -4.47 5.28 -60.29 -0.32 -4.79 16 20 C 0.51 4.49 7.82 -10.98 -0.09 4.40 16 21 O -0.52 -7.30 15.59 5.56 0.09 -7.21 16 22 C -0.06 -0.33 6.30 -29.04 -0.18 -0.51 16 23 C 0.02 0.16 6.10 -82.10 -0.50 -0.34 16 24 C -0.23 -1.25 11.12 -39.38 -0.44 -1.69 16 25 C -0.06 -0.31 12.30 29.74 0.37 0.06 16 26 O 0.11 0.94 11.20 17.17 0.19 1.13 16 27 N -0.34 -3.69 11.46 33.42 0.38 -3.31 16 28 H 0.06 0.24 7.18 -51.93 -0.37 -0.13 16 29 H 0.06 0.39 7.18 -51.93 -0.37 0.01 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.40 3.65 7.65 -40.82 -0.31 3.34 16 34 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 35 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 36 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.40 1.17 7.66 -40.82 -0.31 0.86 16 40 H 0.12 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.17 0.40 8.06 -52.48 -0.42 -0.02 16 43 H 0.22 0.07 8.06 -52.49 -0.42 -0.35 16 LS Contribution 386.83 15.07 5.83 5.83 Total: -1.00 -40.48 386.83 -6.99 -47.47 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -5.99 Total: -1.67 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: -0.44 Total: -3.43 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: 0.48 Total: -42.93 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: 0.37 Total: -17.68 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -40.48 -6.99 -47.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285206418.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.468 kcal (2) G-P(sol) polarization free energy of solvation -40.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds