Wall clock time and date at job start Tue Mar 31 2020 23:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53000 * 109.47060 * 120.00319 * 2 1 3 5 5 N 1.46506 * 109.46901 * 294.99627 * 4 2 1 6 6 C 1.34778 * 119.99654 * 180.02562 * 5 4 2 7 7 O 1.21279 * 120.00192 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.99737 * 180.02562 * 6 5 4 9 9 S 1.81002 * 109.46987 * 180.02562 * 8 6 5 10 10 C 1.76201 * 99.99823 * 180.02562 * 9 8 6 11 11 H 1.07999 * 119.99903 * 0.02562 * 10 9 8 12 12 C 1.38802 * 119.99998 * 179.97438 * 10 9 8 13 13 N 1.31632 * 119.99756 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00005 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.46749 * 90.00651 * 14 12 10 16 16 H 1.48498 * 109.46968 * 210.00558 * 14 12 10 17 17 H 1.48491 * 109.47306 * 330.00429 * 14 12 10 18 18 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 19 19 N 1.46494 * 109.47345 * 65.00126 * 18 2 1 20 20 C 1.34772 * 120.00365 * 179.97438 * 19 18 2 21 21 O 1.21284 * 119.99636 * 359.97438 * 20 19 18 22 22 C 1.50696 * 120.00364 * 179.97438 * 20 19 18 23 23 C 1.50699 * 109.47214 * 179.97438 * 22 20 19 24 24 C 1.41385 * 126.80367 * 124.70851 * 23 22 20 25 25 C 1.35450 * 103.98825 * 179.88661 * 24 23 22 26 26 O 1.34046 * 106.44376 * 0.37399 * 25 24 23 27 27 N 1.20924 * 111.56933 * 359.74389 * 26 25 24 28 28 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 31 31 H 1.08990 * 109.47170 * 54.99895 * 4 2 1 32 32 H 1.09001 * 109.46952 * 174.99972 * 4 2 1 33 33 H 0.97000 * 119.99867 * 0.02562 * 5 4 2 34 34 H 1.09000 * 109.47355 * 299.99895 * 8 6 5 35 35 H 1.09001 * 109.47069 * 60.00104 * 8 6 5 36 36 H 0.97004 * 119.99912 * 179.97438 * 13 12 10 37 37 H 1.09008 * 109.46873 * 184.99985 * 18 2 1 38 38 H 1.08997 * 109.47047 * 304.99674 * 18 2 1 39 39 H 0.97008 * 119.99803 * 359.97438 * 19 18 2 40 40 H 1.08995 * 109.47322 * 299.99728 * 22 20 19 41 41 H 1.08997 * 109.47214 * 60.00023 * 22 20 19 42 42 H 1.08000 * 128.00534 * 0.03174 * 24 23 22 43 43 H 1.08001 * 126.77861 * 180.09526 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6524 0.0353 2.4424 6 6 1.9964 -0.4132 3.6659 7 8 2.6272 -1.4428 3.7791 8 6 1.5973 0.3648 4.8933 9 16 2.2021 -0.4877 6.3710 10 6 1.6112 0.6070 7.6190 11 1 1.0572 1.4919 7.3428 12 6 1.8569 0.3313 8.9570 13 7 2.5318 -0.7476 9.2935 14 14 1.2311 1.4922 10.2800 15 1 -0.1304 1.0749 10.7009 16 1 2.1456 1.4491 11.4492 17 1 1.1808 2.8751 9.7416 18 6 2.0399 -0.7212 -1.2493 19 7 1.6524 0.0354 -2.4424 20 6 1.9963 -0.4130 -3.6659 21 8 2.6271 -1.4427 -3.7792 22 6 1.5971 0.3651 -4.8932 23 6 2.1006 -0.3446 -6.1237 24 6 1.3317 -0.7652 -7.2331 25 6 2.2372 -1.3408 -8.0597 26 8 3.4242 -1.2514 -7.4434 27 7 3.3288 -0.6969 -6.3731 28 1 -0.3635 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5137 0.8900 31 1 1.6054 -1.7198 1.2951 32 1 3.1263 -0.7995 1.2055 33 1 1.1483 0.8591 2.3518 34 1 2.0312 1.3637 4.8474 35 1 0.5110 0.4422 4.9370 36 1 2.7038 -0.9401 10.2286 37 1 3.1263 -0.7995 -1.2057 38 1 1.6053 -1.7197 -1.2952 39 1 1.1482 0.8592 -2.3517 40 1 0.5108 0.4425 -4.9370 41 1 2.0310 1.3639 -4.8473 42 1 0.2688 -0.6515 -7.3870 43 1 2.0409 -1.7879 -9.0230 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001285206422.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:55 Heat of formation + Delta-G solvation = -21.990314 kcal Electronic energy + Delta-G solvation = -25250.808792 eV Core-core repulsion = 21232.553733 eV Total energy + Delta-G solvation = -4018.255059 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.32165 -40.20801 -39.27955 -37.17678 -35.06205 -34.56940 -32.51721 -32.43031 -32.11704 -30.09532 -29.30347 -27.12040 -25.66492 -25.20151 -23.56194 -22.24853 -21.09057 -20.54380 -20.33990 -18.24130 -18.10616 -17.84309 -17.23422 -16.76991 -16.25600 -16.21143 -15.67257 -15.55381 -15.06204 -14.81283 -14.74758 -14.18371 -13.93590 -13.85317 -13.65012 -13.51414 -13.18057 -13.13791 -12.94431 -12.68036 -12.56367 -11.94230 -11.69345 -11.59131 -11.40812 -11.26843 -11.07161 -11.03403 -10.77299 -10.68609 -10.22311 -10.02383 -9.82629 -9.49594 -9.43225 -9.08015 -8.91936 -8.24457 -6.50988 -6.22436 -3.93202 1.13924 1.74930 2.22187 2.66859 2.88887 3.05754 3.08198 3.21539 3.27484 3.31644 3.61826 3.70007 4.04002 4.19500 4.29111 4.40651 4.46976 4.49921 4.62282 4.70598 4.77976 4.98941 5.00909 5.12067 5.12749 5.22127 5.27415 5.33159 5.41703 5.51833 5.54669 5.60807 5.65783 5.84639 5.87285 5.89502 5.99532 6.11627 6.56656 7.01189 7.58452 7.66573 7.79402 7.90292 8.34174 8.59117 9.22795 10.84991 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.048725 B = 0.001352 C = 0.001331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.516961 B =20705.587485 C =21034.007273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 H 0.085 0.915 4 C 0.128 3.872 5 N -0.738 5.738 6 C 0.531 3.469 7 O -0.516 6.516 8 C -0.153 4.153 9 S -0.060 6.060 10 C -0.536 4.536 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 C 0.127 3.873 19 N -0.728 5.728 20 C 0.513 3.487 21 O -0.522 6.522 22 C -0.061 4.061 23 C 0.020 3.980 24 C -0.230 4.230 25 C -0.062 4.062 26 O 0.105 5.895 27 N -0.335 5.335 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.397 0.603 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.268 0.732 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.401 0.599 40 H 0.117 0.883 41 H 0.113 0.887 42 H 0.172 0.828 43 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.663 5.909 -35.191 36.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.134 4.134 3 H 0.103 0.897 4 C 0.003 3.997 5 N -0.393 5.393 6 C 0.317 3.683 7 O -0.390 6.390 8 C -0.304 4.304 9 S 0.167 5.833 10 C -0.685 4.685 11 H 0.091 0.909 12 C -0.135 4.135 13 N -0.502 5.502 14 Si 0.745 3.255 15 H -0.203 1.203 16 H -0.207 1.207 17 H -0.197 1.197 18 C 0.003 3.997 19 N -0.381 5.381 20 C 0.297 3.703 21 O -0.397 6.397 22 C -0.102 4.102 23 C -0.140 4.140 24 C -0.251 4.251 25 C -0.143 4.143 26 O 0.035 5.965 27 N -0.036 5.036 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.231 0.769 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.235 0.765 40 H 0.135 0.865 41 H 0.131 0.869 42 H 0.189 0.811 43 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -4.889 3.424 -34.243 34.760 hybrid contribution -2.629 2.750 0.416 3.827 sum -7.518 6.174 -33.828 35.199 Atomic orbital electron populations 1.21894 0.93986 1.02894 1.01961 1.21593 0.97105 1.00748 0.93906 0.89677 1.21165 1.00343 0.95410 0.82740 1.45965 1.59740 1.28132 1.05476 1.20313 0.78712 0.85496 0.83773 1.90714 1.38242 1.23861 1.86163 1.23528 1.04772 1.03452 0.98639 1.85428 1.72691 1.33074 0.92154 1.22867 1.41466 1.11340 0.92796 0.90938 1.24991 0.94829 0.95793 0.97927 1.70020 1.37361 1.24675 1.18190 0.86168 0.78674 0.80389 0.80269 1.20270 1.20733 1.19711 1.21306 1.00666 0.95350 0.82402 1.45913 1.58480 1.28074 1.05683 1.20310 0.79749 0.85949 0.84276 1.90791 1.38419 1.24037 1.86404 1.19972 1.03237 0.99254 0.87734 1.22852 0.89821 1.03299 0.97999 1.22690 1.02192 1.05595 0.94652 1.26032 0.84434 1.02738 1.01080 1.84893 1.31913 1.56498 1.23150 1.73916 1.20966 1.10496 0.98214 0.92537 0.91917 0.91845 0.91164 0.91224 0.76861 0.89238 0.89242 0.92164 0.90821 0.90815 0.76452 0.86518 0.86851 0.81060 0.76703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 8.94 37.16 0.33 -0.53 16 2 C -0.11 -0.76 2.46 -90.62 -0.22 -0.99 16 3 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 4 C 0.13 1.37 5.07 -4.04 -0.02 1.35 16 5 N -0.74 -9.13 5.28 -60.29 -0.32 -9.45 16 6 C 0.53 9.69 7.85 -10.99 -0.09 9.61 16 7 O -0.52 -11.70 15.86 5.56 0.09 -11.61 16 8 C -0.15 -3.03 6.16 36.00 0.22 -2.81 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 10 C -0.54 -15.22 9.50 30.94 0.29 -14.92 16 11 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 12 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 13 N -0.87 -26.14 13.22 55.49 0.73 -25.41 16 14 Si 0.92 21.29 29.55 -169.99 -5.02 16.27 16 15 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 18 C 0.13 0.98 5.06 -4.04 -0.02 0.96 16 19 N -0.73 -4.47 5.28 -60.30 -0.32 -4.79 16 20 C 0.51 4.49 7.82 -10.99 -0.09 4.40 16 21 O -0.52 -7.30 15.59 5.55 0.09 -7.21 16 22 C -0.06 -0.33 6.30 -29.04 -0.18 -0.51 16 23 C 0.02 0.16 6.10 -82.10 -0.50 -0.34 16 24 C -0.23 -1.24 11.12 -39.38 -0.44 -1.68 16 25 C -0.06 -0.30 12.30 29.74 0.37 0.06 16 26 O 0.11 0.94 11.20 17.16 0.19 1.13 16 27 N -0.34 -3.70 11.46 33.43 0.38 -3.32 16 28 H 0.06 0.22 7.18 -51.93 -0.37 -0.15 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.38 7.18 -51.93 -0.37 0.00 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.40 3.66 7.65 -40.82 -0.31 3.35 16 34 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 35 H 0.09 1.62 8.14 -51.92 -0.42 1.19 16 36 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 37 H 0.07 0.69 8.14 -51.92 -0.42 0.26 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.40 1.17 7.65 -40.82 -0.31 0.86 16 40 H 0.12 0.22 8.14 -51.93 -0.42 -0.20 16 41 H 0.11 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.17 0.39 8.06 -52.49 -0.42 -0.03 16 43 H 0.22 0.07 8.06 -52.49 -0.42 -0.35 16 LS Contribution 386.83 15.07 5.83 5.83 Total: -1.00 -40.52 386.83 -6.99 -47.51 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -5.99 Total: -1.72 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: -0.44 Total: -3.38 kcal Atomic # 7 Polarization: -43.45 SS G_CDS: 0.48 Total: -42.97 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: 0.37 Total: -17.69 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -40.52 -6.99 -47.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285206422.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.517 kcal (2) G-P(sol) polarization free energy of solvation -40.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds