Wall clock time and date at job start Tue Mar 31 2020 23:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.46811 * 2 1 4 4 C 1.46508 * 119.99551 * 90.00555 * 3 2 1 5 5 C 1.53000 * 109.46800 * 269.99659 * 4 3 2 6 6 C 1.52999 * 109.46820 * 180.02562 * 5 4 3 7 7 N 1.46497 * 109.47244 * 180.02562 * 6 5 4 8 8 C 1.34772 * 120.00271 * 179.97438 * 7 6 5 9 9 O 1.21617 * 120.00267 * 0.02562 * 8 7 6 10 10 C 1.47424 * 120.00245 * 179.97438 * 8 7 6 11 11 C 1.36093 * 126.44986 * 180.02562 * 10 8 7 12 12 O 1.34255 * 106.94938 * 180.24817 * 11 10 8 13 13 C 1.34053 * 108.22576 * 359.57524 * 12 11 10 14 14 N 1.29935 * 109.24194 * 0.43696 * 13 12 11 15 15 C 1.34769 * 120.00499 * 270.00052 * 3 2 1 16 16 O 1.21280 * 120.00566 * 180.02562 * 15 3 2 17 17 C 1.50707 * 119.99775 * 0.02562 * 15 3 2 18 18 S 1.81000 * 109.46992 * 180.02562 * 17 15 3 19 19 C 1.76203 * 99.99990 * 180.02562 * 18 17 15 20 20 H 1.08004 * 119.99811 * 359.97438 * 19 18 17 21 21 C 1.38796 * 120.00099 * 179.97438 * 19 18 17 22 22 N 1.31637 * 119.99792 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00010 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47149 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47122 * 119.99946 * 23 21 19 26 26 H 1.48496 * 109.47092 * 240.00026 * 23 21 19 27 27 H 1.08999 * 109.47767 * 59.99587 * 1 2 3 28 28 H 1.09005 * 109.47295 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47221 * 299.99278 * 1 2 3 30 30 H 1.09005 * 109.46757 * 240.00824 * 2 1 3 31 31 H 1.08992 * 109.47516 * 120.00701 * 2 1 3 32 32 H 1.08997 * 109.46542 * 149.99823 * 4 3 2 33 33 H 1.09002 * 109.46875 * 29.99882 * 4 3 2 34 34 H 1.08996 * 109.46940 * 60.00576 * 5 4 3 35 35 H 1.08992 * 109.47234 * 300.00196 * 5 4 3 36 36 H 1.09001 * 109.47295 * 60.00236 * 6 5 4 37 37 H 1.09006 * 109.47525 * 300.00087 * 6 5 4 38 38 H 0.97003 * 120.00004 * 0.02562 * 7 6 5 39 39 H 1.08002 * 126.52257 * 359.97438 * 11 10 8 40 40 H 1.08002 * 125.38217 * 180.13441 * 13 12 11 41 41 H 1.09007 * 109.46863 * 299.99616 * 17 15 3 42 42 H 1.08996 * 109.47101 * 59.99570 * 17 15 3 43 43 H 0.97003 * 119.99342 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2625 2.0718 1.2689 5 6 0.9874 2.7930 1.7106 6 6 1.2427 3.5146 3.0353 7 7 0.0217 4.2047 3.4587 8 6 0.0103 4.9112 4.6063 9 8 1.0138 4.9763 5.2903 10 6 -1.2182 5.6061 5.0320 11 6 -1.3758 6.3523 6.1591 12 8 -2.6433 6.7948 6.1615 13 6 -3.2487 6.3387 5.0559 14 7 -2.4078 5.6223 4.3718 15 6 2.2428 2.0167 -1.1671 16 8 2.6475 3.1600 -1.1671 17 6 1.9912 1.3065 -2.4723 18 16 2.3840 2.4152 -3.8479 19 6 2.0092 1.3598 -5.2082 20 1 1.6535 0.3556 -5.0305 21 6 2.1711 1.8189 -6.5080 22 7 2.6042 3.0430 -6.7245 23 14 1.7744 0.6998 -7.9500 24 1 1.3096 -0.6161 -7.4422 25 1 0.7063 1.3172 -8.7766 26 1 2.9924 0.5082 -8.7776 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 1.8933 -0.5137 -0.8901 31 1 1.8933 -0.5139 0.8898 32 1 3.0643 2.7985 1.1384 33 1 2.5506 1.3450 2.0284 34 1 0.1856 2.0663 1.8409 35 1 0.6993 3.5196 0.9510 36 1 2.0444 4.2414 2.9046 37 1 1.5311 2.7882 3.7952 38 1 -0.7788 4.1525 2.9133 39 1 -0.6254 6.5474 6.9110 40 1 -4.2748 6.5319 4.7799 41 1 2.6212 0.4188 -2.5302 42 1 0.9431 1.0127 -2.5298 43 1 2.7169 3.3639 -7.6329 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001294409783.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:12 Heat of formation + Delta-G solvation = -52.239303 kcal Electronic energy + Delta-G solvation = -25987.253724 eV Core-core repulsion = 21967.686970 eV Total energy + Delta-G solvation = -4019.566754 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.89111 -39.91085 -39.53404 -36.36736 -35.40822 -35.26146 -32.51005 -32.43080 -30.89074 -30.12613 -29.19581 -26.12481 -25.44967 -23.94105 -23.32205 -23.15210 -21.90466 -20.94493 -19.15183 -18.85688 -17.70958 -17.21475 -16.91733 -16.84849 -16.46519 -15.89707 -15.66614 -15.29873 -15.19006 -14.80961 -14.42003 -14.34013 -13.99531 -13.81491 -13.71013 -13.36035 -13.27229 -12.72946 -12.50055 -12.25391 -12.18960 -11.84194 -11.83246 -11.56969 -11.33950 -11.30034 -11.07680 -11.01568 -10.78676 -10.69644 -10.57990 -9.79793 -9.70673 -9.36298 -9.33209 -9.07770 -8.61126 -8.22058 -6.50287 -6.22161 -3.92601 0.66290 1.58319 2.19722 2.70707 2.94454 2.97938 3.06067 3.20950 3.25783 3.30601 3.56151 3.60880 4.19775 4.36270 4.38777 4.64859 4.74370 4.90935 4.91792 5.01564 5.02768 5.12782 5.13003 5.19084 5.27678 5.33883 5.42415 5.52267 5.57232 5.63482 5.65076 5.76652 5.92117 5.95170 6.00356 6.05584 6.13224 6.22774 6.66758 6.87865 7.22456 7.52733 7.59532 7.81565 8.34953 8.55660 9.23281 10.85281 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.017046 B = 0.001860 C = 0.001793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.176424 B =15051.834270 C =15616.712031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.107 3.893 3 N -0.620 5.620 4 C 0.123 3.877 5 C -0.150 4.150 6 C 0.122 3.878 7 N -0.709 5.709 8 C 0.601 3.399 9 O -0.538 6.538 10 C -0.076 4.076 11 C 0.017 3.983 12 O -0.200 6.200 13 C 0.181 3.819 14 N -0.467 5.467 15 C 0.534 3.466 16 O -0.514 6.514 17 C -0.150 4.150 18 S -0.063 6.063 19 C -0.534 4.534 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.918 3.082 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.411 0.589 39 H 0.231 0.769 40 H 0.256 0.744 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.947 -0.492 26.151 28.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.017 4.017 3 N -0.356 5.356 4 C -0.001 4.001 5 C -0.189 4.189 6 C -0.002 4.002 7 N -0.360 5.360 8 C 0.386 3.614 9 O -0.415 6.415 10 C -0.195 4.195 11 C -0.057 4.057 12 O -0.085 6.085 13 C -0.048 4.048 14 N -0.196 5.196 15 C 0.322 3.678 16 O -0.388 6.388 17 C -0.301 4.301 18 S 0.164 5.836 19 C -0.682 4.682 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.246 0.754 39 H 0.247 0.753 40 H 0.272 0.728 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.687 1.065 25.913 27.685 hybrid contribution -1.212 -1.789 -0.673 2.263 sum -10.898 -0.724 25.240 27.502 Atomic orbital electron populations 1.22302 0.96063 1.02199 1.02736 1.21557 0.94460 0.82429 1.03238 1.47991 1.67847 1.14242 1.05505 1.21220 0.96904 0.96889 0.85067 1.22271 0.99803 1.00501 0.96364 1.21364 0.86688 0.96249 0.95884 1.45792 1.15890 1.50968 1.23355 1.16729 0.85146 0.78293 0.81213 1.90842 1.33357 1.62737 1.54570 1.21815 0.94635 1.06623 0.96444 1.25344 0.84247 0.96055 1.00043 1.84461 1.22696 1.59458 1.41847 1.28181 1.00576 0.94353 0.81657 1.70774 1.00300 1.18540 1.30007 1.20352 0.76355 0.86510 0.84629 1.90700 1.43797 1.17461 1.86811 1.23583 1.04728 1.04503 0.97267 1.85408 1.86790 1.18017 0.93410 1.22895 1.51604 1.01515 0.92194 0.90909 1.24999 0.94698 0.95550 0.98398 1.70035 1.43036 1.15629 1.21546 0.86120 0.78176 0.80075 0.81141 1.19618 1.20573 1.20574 0.91901 0.91662 0.92361 0.89919 0.90606 0.89452 0.90567 0.90900 0.90287 0.90690 0.91050 0.75377 0.75264 0.72812 0.89327 0.89254 0.92249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 10.24 37.16 0.38 -1.25 16 2 C 0.11 1.08 5.98 -4.04 -0.02 1.05 16 3 N -0.62 -8.25 2.47 -173.68 -0.43 -8.68 16 4 C 0.12 1.36 5.45 -4.04 -0.02 1.34 16 5 C -0.15 -1.51 5.65 -26.73 -0.15 -1.66 16 6 C 0.12 1.19 5.67 -4.04 -0.02 1.17 16 7 N -0.71 -7.19 5.55 -61.38 -0.34 -7.53 16 8 C 0.60 6.86 7.81 -12.52 -0.10 6.76 16 9 O -0.54 -7.44 16.89 5.26 0.09 -7.36 16 10 C -0.08 -0.72 6.99 -83.02 -0.58 -1.30 16 11 C 0.02 0.12 11.95 29.96 0.36 0.48 16 12 O -0.20 -1.24 10.73 6.51 0.07 -1.17 16 13 C 0.18 0.97 13.19 51.96 0.69 1.66 16 14 N -0.47 -4.07 11.06 -11.48 -0.13 -4.20 16 15 C 0.53 9.88 7.69 -10.99 -0.08 9.79 16 16 O -0.51 -11.49 15.44 5.56 0.09 -11.41 16 17 C -0.15 -3.01 4.71 36.01 0.17 -2.85 16 18 S -0.06 -1.70 20.57 -107.50 -2.21 -3.92 16 19 C -0.53 -15.13 9.50 30.94 0.29 -14.83 16 20 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 21 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 22 N -0.87 -26.12 13.22 55.49 0.73 -25.38 16 23 Si 0.92 21.33 29.55 -169.99 -5.02 16.31 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 27 H 0.06 0.71 7.22 -51.93 -0.37 0.34 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.50 6.26 -51.93 -0.33 0.18 16 30 H 0.08 0.88 6.44 -51.93 -0.33 0.54 16 31 H 0.08 0.58 7.89 -51.93 -0.41 0.17 16 32 H 0.09 1.13 7.42 -51.93 -0.39 0.74 16 33 H 0.08 0.63 7.89 -51.93 -0.41 0.22 16 34 H 0.07 0.64 6.26 -51.93 -0.33 0.32 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.41 3.80 8.20 -40.82 -0.33 3.47 16 39 H 0.23 1.01 8.06 -52.49 -0.42 0.58 16 40 H 0.26 0.09 8.06 -52.49 -0.42 -0.33 16 41 H 0.09 1.65 7.40 -51.91 -0.38 1.27 16 42 H 0.09 1.67 7.18 -51.92 -0.37 1.29 16 43 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 384.12 15.07 5.79 5.79 Total: -1.00 -37.87 384.12 -6.30 -44.16 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -5.74 Total: 1.04 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: 0.81 Total: 2.34 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: -0.16 Total: -45.79 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: 0.24 Total: -19.93 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.87 -6.30 -44.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001294409783.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.077 kcal (2) G-P(sol) polarization free energy of solvation -37.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds