Wall clock time and date at job start Tue Mar 31 2020 23:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21277 * 119.99762 * 2 1 4 4 N 1.34777 * 119.99928 * 180.02562 * 2 1 3 5 5 C 1.47582 * 134.48944 * 179.97438 * 4 2 1 6 6 C 1.53947 * 86.11400 * 204.63412 * 5 4 2 7 7 C 1.50702 * 113.74246 * 221.94034 * 6 5 4 8 8 O 1.21285 * 119.99910 * 358.07609 * 7 6 5 9 9 N 1.34769 * 120.00110 * 178.07930 * 7 6 5 10 10 C 1.47073 * 136.05901 * 359.62245 * 9 7 6 11 11 C 1.53758 * 87.88768 * 152.96839 * 10 9 7 12 12 N 1.46504 * 114.39383 * 272.68119 * 11 10 9 13 13 C 1.34774 * 119.99474 * 248.58258 * 12 11 10 14 14 O 1.21280 * 120.00534 * 0.02562 * 13 12 11 15 15 C 1.50702 * 119.99764 * 179.97438 * 13 12 11 16 16 S 1.80995 * 109.47303 * 180.02562 * 15 13 12 17 17 C 1.76197 * 100.00131 * 180.02562 * 16 15 13 18 18 H 1.08002 * 119.99922 * 359.97438 * 17 16 15 19 19 C 1.38799 * 119.99986 * 180.02562 * 17 16 15 20 20 N 1.31635 * 120.00332 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99852 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47356 * 90.00090 * 21 19 17 23 23 H 1.48505 * 109.46777 * 209.99822 * 21 19 17 24 24 H 1.48501 * 109.46939 * 329.99557 * 21 19 17 25 25 C 1.47068 * 136.05870 * 180.02562 * 9 7 6 26 26 C 1.47575 * 134.49202 * 359.97438 * 4 2 1 27 27 H 1.09006 * 109.47092 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46737 * 299.99400 * 1 2 3 29 29 H 1.08993 * 109.47735 * 59.99610 * 1 2 3 30 30 H 1.09005 * 113.76570 * 90.33344 * 5 4 2 31 31 H 1.08997 * 113.77023 * 318.93414 * 5 4 2 32 32 H 1.09002 * 113.73955 * 90.73971 * 6 5 4 33 33 H 1.08996 * 113.46863 * 267.70542 * 10 9 7 34 34 H 1.08999 * 113.46063 * 38.13827 * 10 9 7 35 35 H 1.08996 * 114.26424 * 139.79292 * 11 10 9 36 36 H 0.96997 * 120.00029 * 68.58459 * 12 11 10 37 37 H 1.09001 * 109.47468 * 300.00555 * 15 13 12 38 38 H 1.08999 * 109.47208 * 60.00189 * 15 13 12 39 39 H 0.96991 * 120.00036 * 180.02562 * 20 19 17 40 40 H 1.08996 * 113.46664 * 321.86522 * 25 9 7 41 41 H 1.09002 * 113.46885 * 92.24358 * 25 9 7 42 42 H 1.08997 * 113.77525 * 41.06032 * 26 4 2 43 43 H 1.09007 * 113.77037 * 269.66489 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6098 -1.5365 -0.0012 6 6 3.1592 -2.8620 -0.6415 7 6 3.8611 -4.0740 -0.0853 8 8 4.7194 -3.9424 0.7615 9 7 3.5351 -5.3042 -0.5288 10 6 2.5829 -5.8614 -1.5013 11 6 3.5440 -7.0488 -1.6763 12 7 4.5848 -6.8411 -2.6863 13 6 4.5642 -7.5520 -3.8311 14 8 3.6840 -8.3634 -4.0254 15 6 5.6344 -7.3380 -4.8703 16 16 5.3328 -8.4311 -6.2810 17 6 6.6915 -7.9845 -7.3101 18 1 7.3931 -7.2319 -6.9817 19 6 6.8595 -8.5991 -8.5432 20 7 6.0041 -9.5160 -8.9437 21 14 8.2996 -8.1251 -9.6346 22 1 9.4638 -8.9924 -9.3223 23 1 7.9196 -8.3007 -11.0594 24 1 8.6599 -6.7054 -9.3897 25 6 3.9701 -6.6807 -0.2481 26 6 1.7863 -2.5892 -0.0007 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 4.0340 -1.6522 0.9963 31 1 4.2231 -0.9181 -0.6565 32 1 3.1467 -2.8409 -1.7312 33 1 1.6254 -6.1393 -1.0610 34 1 2.4739 -5.2533 -2.3993 35 1 3.0497 -8.0166 -1.7597 36 1 5.2886 -6.1919 -2.5310 37 1 5.6144 -6.3006 -5.2041 38 1 6.6099 -7.5620 -4.4387 39 1 6.1217 -9.9457 -9.8052 40 1 5.0430 -6.7708 -0.0782 41 1 3.3785 -7.1742 0.5231 42 1 0.9438 -2.8114 -0.6556 43 1 1.6748 -3.0144 0.9968 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001297003721.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:14 Heat of formation + Delta-G solvation = -54.309537 kcal Electronic energy + Delta-G solvation = -26219.566290 eV Core-core repulsion = 22199.909764 eV Total energy + Delta-G solvation = -4019.656526 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.09986 -41.25255 -40.13805 -39.17192 -38.12678 -34.74221 -34.56503 -32.37964 -31.38869 -30.19706 -28.94447 -27.64457 -27.22531 -27.01326 -24.61126 -22.63563 -21.67750 -20.09780 -19.95153 -19.82136 -18.53383 -18.10873 -17.96181 -17.34974 -17.19371 -16.86933 -16.79427 -16.53469 -16.32541 -16.02474 -15.78146 -15.10078 -14.72424 -14.65806 -14.32272 -14.14942 -14.03721 -13.82857 -13.65443 -13.49019 -13.34478 -13.23512 -13.15527 -13.01713 -12.92007 -12.88644 -12.61206 -12.09976 -12.01562 -11.72731 -11.23226 -11.13786 -10.99978 -10.80815 -10.26922 -10.14190 -9.89995 -9.80530 -8.63987 -8.34372 -6.10995 1.27358 1.42178 1.42793 1.47050 1.49799 1.56186 1.57228 1.58618 1.88994 2.20760 2.28637 2.99906 3.11233 3.27049 3.31762 3.41986 3.50854 3.84490 3.90840 3.95682 4.03634 4.27664 4.31371 4.35135 4.38965 4.45267 4.46081 4.53766 4.54746 4.61139 4.67392 4.68425 4.70309 4.80045 4.86159 4.98099 5.04666 5.43045 5.50878 6.20445 6.42372 6.54910 6.63815 7.00041 7.02062 7.07773 7.21172 8.74450 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014450 B = 0.001990 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.315995 B =14069.543603 C =15000.374520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.524 3.476 3 O -0.605 6.605 4 N -0.649 5.649 5 C 0.115 3.885 6 C -0.134 4.134 7 C 0.555 3.445 8 O -0.580 6.580 9 N -0.642 5.642 10 C 0.094 3.906 11 C 0.099 3.901 12 N -0.697 5.697 13 C 0.545 3.455 14 O -0.553 6.553 15 C -0.134 4.134 16 S -0.141 6.141 17 C -0.548 4.548 18 H 0.080 0.920 19 C 0.015 3.985 20 N -0.909 5.909 21 Si 0.994 3.006 22 H -0.269 1.269 23 H -0.278 1.278 24 H -0.260 1.260 25 C 0.100 3.900 26 C 0.132 3.868 27 H 0.105 0.895 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.142 0.858 33 H 0.137 0.863 34 H 0.090 0.910 35 H 0.126 0.874 36 H 0.411 0.589 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.271 0.729 40 H 0.074 0.926 41 H 0.130 0.870 42 H 0.131 0.869 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.560 11.866 20.976 27.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.317 3.683 3 O -0.487 6.487 4 N -0.384 5.384 5 C -0.008 4.008 6 C -0.155 4.155 7 C 0.345 3.655 8 O -0.459 6.459 9 N -0.377 5.377 10 C -0.029 4.029 11 C -0.007 4.007 12 N -0.350 5.350 13 C 0.331 3.669 14 O -0.430 6.430 15 C -0.286 4.286 16 S 0.086 5.914 17 C -0.696 4.696 18 H 0.098 0.902 19 C -0.190 4.190 20 N -0.545 5.545 21 Si 0.816 3.184 22 H -0.194 1.194 23 H -0.203 1.203 24 H -0.184 1.184 25 C -0.023 4.023 26 C 0.010 3.990 27 H 0.123 0.877 28 H 0.121 0.879 29 H 0.122 0.878 30 H 0.105 0.895 31 H 0.097 0.903 32 H 0.160 0.840 33 H 0.155 0.845 34 H 0.108 0.892 35 H 0.144 0.856 36 H 0.247 0.753 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.147 0.853 42 H 0.149 0.851 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.382 11.433 21.053 27.441 hybrid contribution 2.501 1.342 -0.462 2.876 sum -10.880 12.774 20.591 26.562 Atomic orbital electron populations 1.21851 0.87264 1.06448 1.06098 1.21445 0.92068 0.80960 0.73786 1.90716 1.72252 1.32568 1.53140 1.50196 1.08918 1.06471 1.72860 1.23040 0.84237 0.92039 1.01489 1.23240 0.97736 0.90971 1.03597 1.20002 0.82142 0.82941 0.80452 1.90745 1.34847 1.85927 1.34422 1.49758 1.40590 1.04640 1.42696 1.23880 0.94658 0.92103 0.92277 1.22359 0.90136 1.00826 0.87423 1.45373 1.30228 1.42388 1.17005 1.19872 0.85010 0.79730 0.82267 1.90703 1.38144 1.35860 1.78303 1.23396 1.01425 1.05291 0.98457 1.85461 1.38864 1.52697 1.14392 1.23202 1.13274 1.27429 1.05656 0.90172 1.26062 0.99991 0.94361 0.98583 1.70160 1.37239 1.25662 1.21452 0.85012 0.77386 0.79102 0.76855 1.19439 1.20277 1.18433 1.23545 1.02607 0.79712 0.96456 1.23320 0.96238 0.77048 1.02421 0.87663 0.87850 0.87799 0.89511 0.90282 0.84000 0.84519 0.89195 0.85593 0.75257 0.87432 0.87631 0.91983 0.90720 0.85254 0.85068 0.88068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.15 10.34 71.24 0.74 -0.41 16 2 C 0.52 9.40 8.17 87.66 0.72 10.12 16 3 O -0.61 -17.65 17.83 -3.02 -0.05 -17.70 16 4 N -0.65 -9.12 3.61 -836.86 -3.02 -12.14 16 5 C 0.12 1.87 8.17 86.48 0.71 2.57 16 6 C -0.13 -1.38 4.16 -10.88 -0.05 -1.43 16 7 C 0.55 8.46 7.62 87.66 0.67 9.12 16 8 O -0.58 -14.20 16.69 -3.04 -0.05 -14.25 16 9 N -0.64 -7.01 3.69 -857.77 -3.16 -10.17 16 10 C 0.09 0.67 8.25 83.27 0.69 1.36 16 11 C 0.10 1.30 4.61 45.56 0.21 1.51 16 12 N -0.70 -13.59 5.40 -441.48 -2.38 -15.97 16 13 C 0.55 16.97 7.85 87.66 0.69 17.65 16 14 O -0.55 -21.71 15.45 -3.03 -0.05 -21.76 16 15 C -0.13 -4.87 6.16 71.24 0.44 -4.43 16 16 S -0.14 -7.42 20.57 -56.49 -1.16 -8.58 16 17 C -0.55 -30.36 9.50 67.95 0.65 -29.71 16 18 H 0.08 4.15 7.80 -2.91 -0.02 4.13 16 19 C 0.02 0.84 5.49 84.86 0.47 1.31 16 20 N -0.91 -54.35 13.22 21.65 0.29 -54.06 16 21 Si 0.99 42.79 29.55 68.60 2.03 44.82 16 22 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 23 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 24 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 25 C 0.10 1.01 8.38 83.18 0.70 1.71 16 26 C 0.13 0.75 7.70 86.48 0.67 1.41 16 27 H 0.10 0.12 7.21 -2.38 -0.02 0.10 16 28 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.09 1.65 7.44 -2.38 -0.02 1.63 16 31 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.14 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.14 0.12 8.14 -2.39 -0.02 0.10 16 34 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.13 1.88 7.45 -2.39 -0.02 1.86 16 36 H 0.41 6.70 8.76 -92.71 -0.81 5.88 16 37 H 0.11 3.52 8.14 -2.40 -0.02 3.50 16 38 H 0.11 3.52 8.14 -2.40 -0.02 3.50 16 39 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 40 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.13 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.13 -0.13 7.96 -2.39 -0.02 -0.15 16 43 H 0.10 0.46 8.09 -2.38 -0.02 0.44 16 Total: -1.00 -88.93 388.17 -0.05 -88.99 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: 0.23 Total: 10.05 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: 7.28 Total: 10.78 kcal Atomic # 7 Polarization: -84.06 SS G_CDS: -8.28 Total: -92.34 kcal Atomic # 8 Polarization: -53.55 SS G_CDS: -0.15 Total: -53.71 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Atomic # 16 Polarization: -7.42 SS G_CDS: -1.16 Total: -8.58 kcal Total: -88.93 -0.05 -88.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001297003721.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.678 kcal (2) G-P(sol) polarization free energy of solvation -88.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds