Wall clock time and date at job start Wed Apr 1 2020 00:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34413 * 124.35038 * 2 1 4 4 O 1.21278 * 124.94314 * 0.40298 * 3 2 1 5 5 C 1.51283 * 110.11406 * 180.38603 * 3 2 1 6 6 C 1.54625 * 104.19683 * 16.25265 * 5 3 2 7 7 C 1.46767 * 124.34795 * 179.97438 * 2 1 3 8 8 H 1.09004 * 110.24347 * 282.09021 * 7 2 1 9 9 C 1.50695 * 110.24855 * 44.00041 * 7 2 1 10 10 O 1.21285 * 119.99726 * 18.55049 * 9 7 2 11 11 N 1.34775 * 120.00372 * 198.54843 * 9 7 2 12 12 C 1.46494 * 120.00165 * 180.02562 * 11 9 7 13 13 C 1.53498 * 114.20876 * 155.00006 * 12 11 9 14 14 N 1.47069 * 87.98621 * 87.51415 * 13 12 11 15 15 C 1.34774 * 136.05627 * 207.08577 * 14 13 12 16 16 O 1.21279 * 120.00079 * 0.02562 * 15 14 13 17 17 C 1.50700 * 119.99776 * 180.02562 * 15 14 13 18 18 S 1.81004 * 109.46969 * 179.97438 * 17 15 14 19 19 C 1.76200 * 99.99884 * 179.97438 * 18 17 15 20 20 H 1.08002 * 120.00211 * 0.02562 * 19 18 17 21 21 C 1.38798 * 120.00281 * 179.97438 * 19 18 17 22 22 N 1.31633 * 120.00370 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99801 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.46845 * 269.99984 * 23 21 19 25 25 H 1.48503 * 109.47399 * 29.99474 * 23 21 19 26 26 H 1.48498 * 109.47295 * 150.00081 * 23 21 19 27 27 C 1.47068 * 87.88321 * 27.34429 * 14 13 12 28 28 H 1.09001 * 109.47303 * 270.02722 * 1 2 3 29 29 H 1.09001 * 109.47226 * 30.02760 * 1 2 3 30 30 H 1.09004 * 109.46938 * 150.02263 * 1 2 3 31 31 H 1.09006 * 110.48642 * 134.93145 * 5 3 2 32 32 H 1.08999 * 110.48509 * 257.56918 * 5 3 2 33 33 H 1.08998 * 110.96841 * 217.08087 * 6 5 3 34 34 H 1.08998 * 110.97238 * 93.32061 * 6 5 3 35 35 H 0.97000 * 119.99780 * 359.97438 * 11 9 7 36 36 H 1.08997 * 113.28610 * 21.93338 * 12 11 9 37 37 H 1.09004 * 113.46426 * 332.73521 * 13 12 11 38 38 H 1.08997 * 113.52622 * 202.30943 * 13 12 11 39 39 H 1.08997 * 109.47484 * 59.99659 * 17 15 14 40 40 H 1.09001 * 109.47155 * 299.99489 * 17 15 14 41 41 H 0.96998 * 119.99582 * 180.02562 * 22 21 19 42 42 H 1.09003 * 113.46509 * 87.43804 * 27 14 13 43 43 H 1.08999 * 113.46174 * 217.87444 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2234 1.1097 0.0000 4 8 1.7946 2.2441 0.0070 5 6 3.6898 0.7377 -0.0096 6 6 3.7011 -0.7489 -0.4348 7 6 2.2931 -1.2117 0.0005 8 1 2.3290 -1.6436 1.0008 9 6 1.7477 -2.2166 -0.9811 10 8 0.9881 -1.8587 -1.8563 11 7 2.1040 -3.5130 -0.8867 12 6 1.5742 -4.4897 -1.8414 13 6 2.4591 -5.7298 -2.0296 14 7 1.7550 -6.3408 -0.8920 15 6 2.0447 -7.2642 0.0459 16 8 3.1340 -7.7973 0.0559 17 6 1.0151 -7.6344 1.0821 18 16 1.6993 -8.8913 2.1904 19 6 0.3258 -9.1293 3.2681 20 1 -0.5828 -8.5653 3.1176 21 6 0.4112 -10.0423 4.3100 22 7 -0.6151 -10.2205 5.1149 23 14 1.9825 -11.0184 4.5701 24 1 1.9128 -12.2840 3.7963 25 1 3.1447 -10.2184 4.1067 26 1 2.1393 -11.3289 6.0137 27 6 0.5935 -5.5053 -1.2324 28 1 -0.3634 0.0005 1.0277 29 1 -0.3634 0.8897 -0.5143 30 1 -0.3633 -0.8902 -0.5135 31 1 4.2329 1.3457 -0.7332 32 1 4.1191 0.8531 0.9856 33 1 4.4753 -1.3011 0.0978 34 1 3.8273 -0.8452 -1.5132 35 1 2.7118 -3.7991 -0.1870 36 1 1.2318 -4.0395 -2.7731 37 1 3.5154 -5.5426 -1.8364 38 1 2.2886 -6.2466 -2.9739 39 1 0.1280 -8.0304 0.5878 40 1 0.7452 -6.7494 1.6585 41 1 -0.5551 -10.8583 5.8432 42 1 -0.0696 -5.9625 -1.9669 43 1 0.0605 -5.1271 -0.3601 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001297124852.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:01:22 Heat of formation + Delta-G solvation = -50.716296 kcal Electronic energy + Delta-G solvation = -26852.906349 eV Core-core repulsion = 22833.405638 eV Total energy + Delta-G solvation = -4019.500711 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.52364 -40.66405 -39.21782 -37.77848 -36.53878 -34.27976 -33.12554 -32.50992 -30.75298 -29.10858 -27.71491 -27.01014 -26.28379 -25.66081 -23.56555 -22.11925 -21.19685 -19.89999 -19.26111 -18.30433 -17.78906 -17.28507 -16.84500 -16.70592 -16.39836 -15.79817 -15.59521 -15.33028 -15.23590 -14.98583 -14.37190 -14.30167 -14.08598 -13.92205 -13.69425 -13.31434 -13.16338 -13.02756 -12.96423 -12.87547 -12.46354 -12.32919 -12.31734 -12.15635 -11.69488 -11.41706 -11.31618 -11.07255 -10.70057 -10.57129 -10.20227 -9.93098 -9.74806 -9.55649 -9.14986 -9.07510 -8.88396 -8.59730 -7.01358 -6.35638 -4.08703 1.91041 2.09672 2.35103 2.43447 2.71738 2.79573 3.02860 3.27388 3.43653 3.49277 3.75083 3.76175 3.91204 4.05747 4.25229 4.31352 4.35823 4.45162 4.58599 4.78288 4.83610 4.92618 4.99152 5.03361 5.09537 5.10546 5.22320 5.23841 5.25059 5.28094 5.32094 5.33309 5.54240 5.64566 5.70511 5.90717 5.95080 5.97711 6.62384 6.89939 7.56626 7.59088 7.75680 7.87246 8.25701 8.34643 9.10123 10.73528 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015048 B = 0.002303 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.234155 B =12153.147603 C =12877.184880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.601 5.601 3 C 0.519 3.481 4 O -0.528 6.528 5 C -0.153 4.153 6 C -0.120 4.120 7 C 0.112 3.888 8 H 0.109 0.891 9 C 0.514 3.486 10 O -0.522 6.522 11 N -0.702 5.702 12 C 0.106 3.894 13 C 0.099 3.901 14 N -0.654 5.654 15 C 0.561 3.439 16 O -0.514 6.514 17 C -0.116 4.116 18 S -0.141 6.141 19 C -0.522 4.522 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.879 5.879 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.235 1.235 26 H -0.274 1.274 27 C 0.087 3.913 28 H 0.055 0.945 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.104 0.896 34 H 0.089 0.911 35 H 0.409 0.591 36 H 0.127 0.873 37 H 0.083 0.917 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.271 0.729 42 H 0.098 0.902 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.046 18.647 -14.391 24.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.335 5.335 3 C 0.307 3.693 4 O -0.404 6.404 5 C -0.193 4.193 6 C -0.159 4.159 7 C 0.004 3.996 8 H 0.126 0.874 9 C 0.298 3.702 10 O -0.397 6.397 11 N -0.354 5.354 12 C -0.001 4.001 13 C -0.025 4.025 14 N -0.393 5.393 15 C 0.351 3.649 16 O -0.388 6.388 17 C -0.267 4.267 18 S 0.086 5.914 19 C -0.670 4.670 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.515 5.515 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.159 1.159 26 H -0.199 1.199 27 C -0.038 4.038 28 H 0.074 0.926 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.126 0.874 32 H 0.129 0.871 33 H 0.122 0.878 34 H 0.108 0.892 35 H 0.244 0.756 36 H 0.145 0.855 37 H 0.102 0.898 38 H 0.116 0.884 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.081 0.919 42 H 0.116 0.884 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 7.754 18.461 -14.649 24.810 hybrid contribution -0.743 -0.403 0.689 1.090 sum 7.011 18.059 -13.960 23.878 Atomic orbital electron populations 1.21712 0.77103 1.04440 1.01691 1.47846 1.06878 1.05529 1.73260 1.20845 0.89218 0.84165 0.75061 1.90744 1.78678 1.20785 1.50173 1.22370 0.94833 0.96832 1.05308 1.22619 0.93873 0.95863 1.03510 1.21649 0.92081 0.86325 0.99555 0.87355 1.20676 0.81183 0.82720 0.85579 1.90737 1.34775 1.79200 1.34982 1.45545 1.49349 1.06782 1.33709 1.22289 0.95619 0.88259 0.93922 1.23280 0.98853 0.89594 0.90798 1.49753 1.17767 1.42299 1.29507 1.19927 0.88414 0.76160 0.80425 1.90726 1.24128 1.50678 1.73264 1.23214 1.00479 1.04212 0.98747 1.84795 1.23979 1.49505 1.33170 1.22284 1.00068 1.28999 1.15635 0.89391 1.24717 0.96712 0.95591 0.94272 1.69936 1.30016 1.34785 1.16785 0.86735 0.84657 0.81942 0.78505 1.19171 1.15940 1.19868 1.23573 0.90946 0.88641 1.00613 0.92592 0.90519 0.89738 0.87431 0.87141 0.87776 0.89214 0.75593 0.85487 0.89833 0.88363 0.88586 0.88627 0.91859 0.88387 0.89773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.82 10.43 59.85 0.62 1.44 16 2 N -0.60 -5.29 3.00 -174.02 -0.52 -5.81 16 3 C 0.52 5.16 8.02 -10.86 -0.09 5.07 16 4 O -0.53 -7.45 17.60 5.56 0.10 -7.35 16 5 C -0.15 -0.81 6.86 -26.74 -0.18 -0.99 16 6 C -0.12 -0.46 6.67 -25.10 -0.17 -0.63 16 7 C 0.11 0.67 3.71 -68.17 -0.25 0.41 16 8 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 9 C 0.51 3.82 6.53 -10.99 -0.07 3.75 16 10 O -0.52 -5.61 14.19 5.55 0.08 -5.53 16 11 N -0.70 -4.32 5.40 -53.49 -0.29 -4.61 16 12 C 0.11 0.68 4.61 -67.68 -0.31 0.37 16 13 C 0.10 0.75 8.38 -8.51 -0.07 0.68 16 14 N -0.65 -7.33 3.69 -185.06 -0.68 -8.01 16 15 C 0.56 9.28 8.10 -10.99 -0.09 9.20 16 16 O -0.51 -10.48 16.64 5.56 0.09 -10.39 16 17 C -0.12 -2.14 5.98 36.01 0.22 -1.92 16 18 S -0.14 -3.44 18.55 -107.50 -1.99 -5.43 16 19 C -0.52 -14.64 10.04 30.94 0.31 -14.33 16 20 H 0.09 2.58 8.03 -52.49 -0.42 2.16 16 21 C 0.10 2.74 5.50 -17.43 -0.10 2.65 16 22 N -0.88 -26.01 13.97 55.49 0.78 -25.24 16 23 Si 0.86 21.22 27.74 -169.99 -4.71 16.50 16 24 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 25 H -0.24 -5.78 6.74 56.52 0.38 -5.40 16 26 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 27 C 0.09 0.68 8.25 -8.37 -0.07 0.61 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.74 7.93 -51.93 -0.41 0.33 16 30 H 0.08 0.77 5.98 -51.93 -0.31 0.46 16 31 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.11 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.10 0.15 8.14 -51.93 -0.42 -0.28 16 34 H 0.09 0.37 7.90 -51.93 -0.41 -0.04 16 35 H 0.41 2.16 8.76 -40.82 -0.36 1.80 16 36 H 0.13 0.77 7.45 -51.93 -0.39 0.38 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16 40 H 0.10 1.64 8.14 -51.92 -0.42 1.21 16 41 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 378.72 15.07 5.71 5.71 Total: -1.00 -38.34 378.72 -7.81 -46.14 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -6.10 Total: -2.28 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: -0.25 Total: 6.30 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: -0.72 Total: -43.67 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: 0.27 Total: -23.27 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.71 Total: 16.50 kcal Atomic # 16 Polarization: -3.44 SS G_CDS: -1.99 Total: -5.43 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -38.34 -7.81 -46.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001297124852.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.574 kcal (2) G-P(sol) polarization free energy of solvation -38.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds