Wall clock time and date at job start Tue Mar 31 2020 23:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.36213 * 116.99967 * 2 1 4 4 C 1.34082 * 122.49706 * 359.97438 * 3 2 1 5 5 S 1.70614 * 110.96838 * 179.74488 * 4 3 2 6 6 C 1.75810 * 91.62062 * 0.35636 * 5 4 3 7 7 C 1.46547 * 125.42306 * 179.91276 * 6 5 4 8 8 O 1.21708 * 119.99918 * 179.69245 * 7 6 5 9 9 N 1.34775 * 120.00348 * 359.69303 * 7 6 5 10 10 C 1.46493 * 120.00236 * 180.02562 * 9 7 6 11 11 C 1.53006 * 109.47189 * 180.02562 * 10 9 7 12 12 H 1.08993 * 109.46955 * 65.00107 * 11 10 9 13 13 C 1.52997 * 109.47127 * 185.00095 * 11 10 9 14 14 N 1.46902 * 109.46626 * 304.99760 * 11 10 9 15 15 C 1.46907 * 110.99670 * 155.00338 * 14 11 10 16 16 C 1.50700 * 109.46887 * 180.02562 * 15 14 11 17 17 O 1.21295 * 120.00159 * 359.97438 * 16 15 14 18 18 N 1.34780 * 119.99561 * 179.97438 * 16 15 14 19 19 C 1.37099 * 119.99515 * 180.02562 * 18 16 15 20 20 H 1.07995 * 120.00474 * 359.97438 * 19 18 16 21 21 C 1.38955 * 119.99632 * 180.02562 * 19 18 16 22 22 N 1.31412 * 120.00103 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99786 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47268 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47005 * 120.00128 * 23 21 19 26 26 H 1.48503 * 109.46537 * 239.99993 * 23 21 19 27 27 C 1.36742 * 109.14636 * 359.64902 * 6 5 4 28 28 H 1.09006 * 109.47302 * 60.00295 * 1 2 3 29 29 H 1.08999 * 109.47402 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47486 * 299.99787 * 1 2 3 31 31 H 1.07999 * 124.51463 * 0.02562 * 4 3 2 32 32 H 0.97005 * 119.99768 * 0.02562 * 9 7 6 33 33 H 1.08997 * 109.47341 * 59.99745 * 10 9 7 34 34 H 1.09004 * 109.47562 * 299.99900 * 10 9 7 35 35 H 1.09002 * 109.47153 * 179.97438 * 13 11 10 36 36 H 1.09001 * 109.47289 * 299.99953 * 13 11 10 37 37 H 1.09004 * 109.47261 * 59.99697 * 13 11 10 38 38 H 1.00902 * 110.99990 * 278.94758 * 14 11 10 39 39 H 1.09000 * 109.46588 * 299.99934 * 15 14 11 40 40 H 1.08994 * 109.47385 * 59.99624 * 15 14 11 41 41 H 0.97000 * 120.00246 * 359.97438 * 18 16 15 42 42 H 0.96993 * 119.99943 * 180.02562 * 22 21 19 43 43 H 1.08003 * 123.36515 * 180.30189 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0473 1.2137 0.0000 4 6 1.3667 2.3689 -0.0005 5 16 2.4295 3.7036 0.0067 6 6 3.8353 2.6479 -0.0004 7 6 5.2316 3.0927 -0.0005 8 8 6.1314 2.2731 -0.0001 9 7 5.5195 4.4093 -0.0010 10 6 6.9153 4.8540 -0.0016 11 6 6.9634 6.3833 -0.0014 12 1 6.5413 6.7599 0.9302 13 6 8.4157 6.8478 -0.1278 14 7 6.1843 6.8977 -1.1356 15 6 5.7053 8.2609 -0.8700 16 6 4.9116 8.7537 -2.0524 17 8 4.7603 8.0398 -3.0213 18 7 4.3699 9.9877 -2.0333 19 6 3.6474 10.4358 -3.1089 20 1 3.5127 9.8002 -3.9716 21 6 3.0893 11.7082 -3.0894 22 7 3.2537 12.4818 -2.0399 23 14 2.1055 12.3191 -4.5551 24 1 2.0689 11.2652 -5.6007 25 1 0.7207 12.6375 -4.1237 26 1 2.7456 13.5405 -5.1064 27 6 3.4182 1.3456 0.0000 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 0.2894 2.4445 -0.0006 32 1 4.8024 5.0626 -0.0009 33 1 7.4172 4.4744 -0.8916 34 1 7.4179 4.4750 0.8883 35 1 8.4500 7.9373 -0.1281 36 1 8.9939 6.4660 0.7137 37 1 8.8379 6.4711 -1.0595 38 1 6.7218 6.8633 -1.9888 39 1 5.0711 8.2567 0.0166 40 1 6.5576 8.9196 -0.7039 41 1 4.4906 10.5584 -1.2583 42 1 2.8639 13.3698 -2.0262 43 1 4.0960 0.5048 0.0010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317259712.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:21 Heat of formation + Delta-G solvation = -74.774363 kcal Electronic energy + Delta-G solvation = -26364.635024 eV Core-core repulsion = 22344.091077 eV Total energy + Delta-G solvation = -4020.543947 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.19099 -39.53635 -38.45660 -37.00943 -35.92642 -34.19720 -33.78334 -31.36460 -30.87775 -29.65626 -28.20410 -26.70726 -26.27493 -24.24098 -23.80190 -21.37311 -21.08259 -19.63931 -19.31031 -18.72805 -17.94512 -17.31865 -16.57481 -16.11628 -16.08763 -15.95284 -15.55748 -15.15702 -14.75492 -14.60866 -14.57882 -14.11800 -13.91163 -13.35857 -13.30632 -13.12366 -13.10784 -12.94439 -12.59652 -12.50704 -12.22076 -11.95087 -11.75025 -11.61713 -11.45332 -11.22510 -11.12023 -11.09299 -11.01605 -10.37509 -10.26205 -10.14981 -9.55892 -9.20880 -8.97549 -8.54721 -8.21743 -8.16159 -8.00353 -6.45878 -3.86623 0.30096 1.28094 1.71641 2.22129 2.87697 3.13254 3.13406 3.24361 3.31020 3.31778 3.85817 4.01771 4.25692 4.62798 4.71911 4.72402 4.82773 4.85956 4.97117 5.04679 5.08103 5.16862 5.16932 5.23161 5.44146 5.48113 5.59939 5.65412 5.70536 5.71964 5.83945 5.87600 5.95739 6.01231 6.21424 6.37454 6.95777 7.08862 7.47126 7.51730 7.54648 8.02302 8.12114 8.56711 9.14087 9.49959 10.01055 10.71845 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009882 B = 0.002658 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2832.847894 B =10532.781735 C =12936.707018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.307 6.307 3 C 0.100 3.900 4 C -0.344 4.344 5 S 0.251 5.749 6 C -0.240 4.240 7 C 0.589 3.411 8 O -0.536 6.536 9 N -0.705 5.705 10 C 0.135 3.865 11 C 0.067 3.933 12 H 0.085 0.915 13 C -0.180 4.180 14 N -0.665 5.665 15 C 0.049 3.951 16 C 0.439 3.561 17 O -0.582 6.582 18 N -0.564 5.564 19 C -0.298 4.298 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.901 5.901 23 Si 0.928 3.072 24 H -0.268 1.268 25 H -0.281 1.281 26 H -0.282 1.282 27 C -0.072 4.072 28 H 0.055 0.945 29 H 0.100 0.900 30 H 0.054 0.946 31 H 0.171 0.829 32 H 0.408 0.592 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.354 0.646 39 H 0.086 0.914 40 H 0.046 0.954 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.265 -16.630 9.805 19.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.221 6.221 3 C 0.043 3.957 4 C -0.482 4.482 5 S 0.518 5.482 6 C -0.361 4.361 7 C 0.375 3.625 8 O -0.415 6.415 9 N -0.356 5.356 10 C 0.011 3.989 11 C -0.044 4.044 12 H 0.103 0.897 13 C -0.240 4.240 14 N -0.298 5.298 15 C -0.084 4.084 16 C 0.225 3.775 17 O -0.466 6.466 18 N -0.200 5.200 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.208 1.208 27 C -0.107 4.107 28 H 0.073 0.927 29 H 0.118 0.882 30 H 0.072 0.928 31 H 0.188 0.812 32 H 0.244 0.756 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.175 0.825 39 H 0.104 0.896 40 H 0.064 0.936 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -0.531 -16.371 9.378 18.874 hybrid contribution -0.279 0.230 -0.340 0.496 sum -0.810 -16.140 9.039 18.517 Atomic orbital electron populations 1.23040 0.78259 1.03924 1.01361 1.86104 1.21231 1.25209 1.89571 1.17530 0.91535 0.84709 1.01960 1.25151 1.05988 0.97735 1.19346 1.83319 0.92328 1.05447 1.67106 1.24475 0.98031 0.97625 1.15944 1.16816 0.86196 0.82747 0.76768 1.90820 1.46783 1.53199 1.50744 1.45646 1.09734 1.06184 1.74074 1.21396 0.81917 0.93337 1.02294 1.21870 0.92910 0.93825 0.95826 0.89664 1.22428 0.96736 1.02060 1.02754 1.60189 1.42761 1.22134 1.04720 1.21729 0.98570 0.89296 0.98769 1.19799 0.85315 0.83302 0.89116 1.90541 1.63979 1.56320 1.35720 1.41875 1.46559 1.13076 1.18512 1.19746 1.27297 0.98835 0.96913 0.87867 1.25261 0.98290 0.96056 0.98331 1.69614 1.45616 1.09961 1.29097 0.85814 0.78986 0.78717 0.80927 1.19196 1.20730 1.20775 1.19888 0.92792 0.96846 1.01200 0.92672 0.88175 0.92763 0.81167 0.75586 0.91116 0.90970 0.91852 0.91773 0.91899 0.82526 0.89622 0.93615 0.77489 0.91911 0.82173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.93 101.05 1.00 1.20 16 2 O -0.31 -3.28 10.56 -20.42 -0.22 -3.50 16 3 C 0.10 1.14 6.61 -41.23 -0.27 0.87 16 4 C -0.34 -3.54 9.81 29.27 0.29 -3.25 16 5 S 0.25 2.76 22.15 -107.50 -2.38 0.38 16 6 C -0.24 -3.07 6.45 -36.78 -0.24 -3.31 16 7 C 0.59 8.39 7.78 -12.91 -0.10 8.29 16 8 O -0.54 -9.06 16.84 5.18 0.09 -8.97 16 9 N -0.71 -8.90 5.38 -61.66 -0.33 -9.23 16 10 C 0.13 1.52 5.37 -4.04 -0.02 1.50 16 11 C 0.07 0.71 2.75 -67.71 -0.19 0.52 16 12 H 0.09 0.83 7.80 -51.93 -0.41 0.43 16 13 C -0.18 -1.65 9.16 37.16 0.34 -1.31 16 14 N -0.67 -9.40 5.31 -107.99 -0.57 -9.98 16 15 C 0.05 0.77 5.97 -4.97 -0.03 0.74 16 16 C 0.44 9.75 7.82 -10.98 -0.09 9.66 16 17 O -0.58 -15.05 15.78 5.54 0.09 -14.97 16 18 N -0.56 -13.66 5.29 -10.96 -0.06 -13.72 16 19 C -0.30 -8.08 9.68 -14.93 -0.14 -8.22 16 20 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -23.93 13.05 55.50 0.72 -23.21 16 23 Si 0.93 20.62 29.55 -169.99 -5.02 15.59 16 24 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 25 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 27 C -0.07 -0.90 10.00 -40.31 -0.40 -1.30 16 28 H 0.05 0.33 7.84 -51.93 -0.41 -0.07 16 29 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.31 7.84 -51.93 -0.41 -0.10 16 31 H 0.17 1.36 6.96 -52.49 -0.37 0.99 16 32 H 0.41 5.03 7.25 -40.82 -0.30 4.74 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.60 7.45 -51.93 -0.39 0.22 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 38 H 0.35 5.42 8.17 -39.29 -0.32 5.10 16 39 H 0.09 1.21 8.06 -51.93 -0.42 0.79 16 40 H 0.05 0.65 7.43 -51.93 -0.39 0.27 16 41 H 0.39 9.07 7.90 -40.82 -0.32 8.75 16 42 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 43 H 0.16 1.93 8.06 -52.48 -0.42 1.51 16 LS Contribution 382.99 15.07 5.77 5.77 Total: -1.00 -32.73 382.99 -7.62 -40.35 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: -5.76 Total: 15.61 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: 0.05 Total: 5.87 kcal Atomic # 7 Polarization: -55.90 SS G_CDS: -0.24 Total: -56.14 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -0.04 Total: -27.43 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: 2.76 SS G_CDS: -2.38 Total: 0.38 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.73 -7.62 -40.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317259712.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.425 kcal (2) G-P(sol) polarization free energy of solvation -32.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds