Wall clock time and date at job start Wed Apr 1 2020 00:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28084 * 119.15878 * 2 1 4 4 C 1.31200 * 122.96803 * 179.09342 * 3 2 1 5 5 C 1.39827 * 119.66139 * 359.52614 * 4 3 2 6 6 C 1.36834 * 118.75770 * 1.11488 * 5 4 3 7 7 C 1.34692 * 119.15665 * 179.72300 * 2 1 3 8 8 O 1.22066 * 120.52031 * 1.29242 * 7 2 1 9 9 C 1.50509 * 122.52259 * 181.56516 * 5 4 3 10 10 N 1.46792 * 109.46060 * 348.19060 * 9 5 4 11 11 S 1.65602 * 121.26680 * 224.51228 * 10 9 5 12 12 O 1.42095 * 104.27775 * 26.09168 * 11 10 9 13 13 O 1.42098 * 104.27424 * 153.94839 * 11 10 9 14 14 C 1.81394 * 104.44750 * 270.01854 * 11 10 9 15 15 C 1.53001 * 109.47291 * 180.02562 * 14 11 10 16 16 C 1.52998 * 109.47331 * 180.02562 * 15 14 11 17 17 C 1.50705 * 109.47173 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99753 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00127 * 180.02562 * 17 16 15 20 20 N 1.31511 * 119.99986 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99831 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47526 * 59.99566 * 21 19 17 23 23 H 1.48507 * 109.46837 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47138 * 299.99187 * 21 19 17 25 25 C 1.47169 * 117.46210 * 44.52965 * 10 9 5 26 26 C 1.50625 * 117.99834 * 179.18304 * 4 3 2 27 27 H 1.08994 * 109.47250 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47369 * 120.00569 * 1 2 3 29 29 H 1.08999 * 109.47223 * 240.00313 * 1 2 3 30 30 H 1.07992 * 121.02080 * 179.28914 * 6 5 4 31 31 H 1.08997 * 109.47210 * 228.19362 * 9 5 4 32 32 H 1.09002 * 109.47300 * 108.18901 * 9 5 4 33 33 H 1.08998 * 109.47418 * 300.00233 * 14 11 10 34 34 H 1.09000 * 109.47466 * 60.00442 * 14 11 10 35 35 H 1.08998 * 109.46876 * 300.00315 * 15 14 11 36 36 H 1.08996 * 109.47159 * 59.99834 * 15 14 11 37 37 H 1.08998 * 109.47265 * 299.99914 * 16 15 14 38 38 H 1.08996 * 109.47267 * 59.99738 * 16 15 14 39 39 H 0.96996 * 120.00016 * 180.02562 * 20 19 17 40 40 H 1.09002 * 109.71855 * 175.66064 * 25 10 9 41 41 H 1.09006 * 109.75439 * 55.03767 * 25 10 9 42 42 H 1.08997 * 109.22477 * 280.15503 * 26 4 3 43 43 H 1.09007 * 109.21928 * 39.54563 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.0891 1.1185 0.0000 4 6 3.3980 1.2058 0.0174 5 6 4.1689 0.0396 0.0471 6 6 3.5317 -1.1713 0.0339 7 6 2.1212 -1.1762 0.0057 8 8 1.5052 -2.2299 -0.0129 9 6 5.6728 0.0648 0.1030 10 7 6.1492 1.4274 -0.1640 11 16 7.4216 1.7082 -1.1860 12 8 7.4141 0.5949 -2.0690 13 8 7.1999 3.0266 -1.6675 14 6 8.8833 1.6598 -0.1130 15 6 10.1392 1.9093 -0.9503 16 6 11.3722 1.8679 -0.0454 17 6 12.6092 2.1143 -0.8701 18 1 12.5245 2.2831 -1.9335 19 6 13.8492 2.1232 -0.2673 20 7 13.9524 1.9172 1.0274 21 14 15.3824 2.4294 -1.2896 22 1 15.2882 3.7628 -1.9361 23 1 16.5791 2.3890 -0.4112 24 1 15.4988 1.3800 -2.3338 25 6 5.4533 2.5343 0.5116 26 6 4.0155 2.5795 -0.0036 27 1 -0.3633 1.0276 -0.0005 28 1 -0.3634 -0.5139 -0.8899 29 1 -0.3633 -0.5138 0.8900 30 1 4.0914 -2.0948 0.0444 31 1 6.0757 -0.6147 -0.6480 32 1 6.0049 -0.2489 1.0926 33 1 8.7980 2.4314 0.6522 34 1 8.9522 0.6818 0.3633 35 1 10.2247 1.1381 -1.7158 36 1 10.0702 2.8874 -1.4263 37 1 11.2869 2.6390 0.7203 38 1 11.4411 0.8896 0.4303 39 1 14.8247 1.9238 1.4515 40 1 5.9544 3.4757 0.2864 41 1 5.4529 2.3665 1.5887 42 1 4.0121 2.9589 -1.0254 43 1 3.4291 3.2462 0.6287 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319002059.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:22 Heat of formation + Delta-G solvation = -45.445872 kcal Electronic energy + Delta-G solvation = -27326.287084 eV Core-core repulsion = 23307.014916 eV Total energy + Delta-G solvation = -4019.272169 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.43947 -38.90831 -37.61388 -37.13134 -35.89464 -34.73968 -34.58319 -33.32474 -32.23715 -30.34446 -29.04236 -27.86854 -25.93685 -25.06349 -23.75243 -23.49908 -21.74288 -20.63303 -19.43117 -18.46858 -17.84924 -17.25016 -17.12511 -16.80983 -16.57489 -16.02327 -15.76685 -15.20835 -14.95452 -14.79517 -14.51220 -14.23690 -14.05353 -13.70673 -13.59234 -13.37521 -13.13810 -12.97283 -12.65050 -12.49233 -12.34672 -12.17538 -12.06755 -11.89542 -11.86633 -11.57014 -11.38730 -11.24073 -10.93066 -10.92877 -10.51678 -10.34983 -10.14341 -10.00839 -9.64916 -9.34729 -9.10905 -8.69913 -8.44216 -6.09371 -4.12710 0.10475 0.24897 1.21615 1.88916 2.48864 2.99416 3.29720 3.33897 3.36860 3.63872 3.85124 3.91765 4.08414 4.11149 4.37954 4.39442 4.51176 4.71525 4.79343 4.82119 4.94790 4.99396 5.06972 5.10047 5.11142 5.15891 5.19800 5.26141 5.27103 5.35272 5.48235 5.60809 5.77833 5.79513 5.83151 6.09545 6.22700 6.37210 6.80517 7.28186 7.51699 7.61268 7.80078 7.88165 8.28260 8.93235 9.52255 11.01718 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.030329 B = 0.002180 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.996537 B =12839.312710 C =13147.783177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.344 5.344 3 N -0.228 5.228 4 C 0.080 3.920 5 C -0.031 4.031 6 C -0.194 4.194 7 C 0.477 3.523 8 O -0.537 6.537 9 C 0.151 3.849 10 N -1.009 6.009 11 S 2.597 3.403 12 O -0.956 6.956 13 O -0.953 6.953 14 C -0.605 4.605 15 C -0.107 4.107 16 C 0.031 3.969 17 C -0.528 4.528 18 H 0.058 0.942 19 C 0.058 3.942 20 N -0.895 5.895 21 Si 0.895 3.105 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.276 1.276 25 C 0.121 3.879 26 C -0.068 4.068 27 H 0.099 0.901 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.168 0.832 31 H 0.121 0.879 32 H 0.099 0.901 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.021 0.979 38 H 0.021 0.979 39 H 0.262 0.738 40 H 0.109 0.891 41 H 0.081 0.919 42 H 0.095 0.905 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.096 -0.422 2.515 25.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.164 5.164 3 N -0.052 5.052 4 C -0.089 4.089 5 C -0.038 4.038 6 C -0.225 4.225 7 C 0.276 3.724 8 O -0.416 6.416 9 C 0.025 3.975 10 N -0.845 5.845 11 S 2.695 3.305 12 O -0.947 6.947 13 O -0.943 6.943 14 C -0.737 4.737 15 C -0.146 4.146 16 C -0.007 4.007 17 C -0.566 4.566 18 H 0.076 0.924 19 C -0.144 4.144 20 N -0.534 5.534 21 Si 0.722 3.278 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.201 1.201 25 C -0.004 4.004 26 C -0.108 4.108 27 H 0.118 0.882 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.185 0.815 31 H 0.139 0.861 32 H 0.117 0.883 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.039 0.961 38 H 0.039 0.961 39 H 0.072 0.928 40 H 0.128 0.872 41 H 0.100 0.900 42 H 0.114 0.886 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -26.287 -0.429 1.687 26.345 hybrid contribution 1.674 -0.618 0.245 1.801 sum -24.613 -1.047 1.932 24.711 Atomic orbital electron populations 1.22128 0.74021 1.04979 1.04393 1.46582 1.09593 1.02762 1.57437 1.70912 1.11744 1.12090 1.10494 1.21443 0.87216 0.96825 1.03461 1.20908 0.98021 0.92788 0.92121 1.22640 0.93103 0.99712 1.07038 1.17958 0.89725 0.84080 0.80614 1.90992 1.69520 1.29046 1.52020 1.20381 0.88628 0.84357 1.04088 1.58100 1.49023 1.11760 1.65579 1.05580 0.75364 0.74287 0.75241 1.93565 1.86193 1.53657 1.61251 1.93572 1.84209 1.38763 1.77765 1.30579 1.16593 1.11371 1.15203 1.21523 0.92997 1.01626 0.98485 1.19056 0.89629 0.97747 0.94270 1.21208 0.91333 1.49309 0.94770 0.92411 1.25017 0.99246 0.95105 0.94988 1.69939 1.24479 1.49596 1.09371 0.86610 0.82133 0.78959 0.80054 1.20106 1.21243 1.20108 1.21465 0.91331 0.90232 0.97414 1.20551 0.95504 0.90239 1.04519 0.88220 0.89621 0.89641 0.81476 0.86125 0.88308 0.85207 0.85273 0.91547 0.91508 0.96088 0.96102 0.92806 0.87249 0.90026 0.88638 0.88116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.55 10.23 59.85 0.61 1.17 16 2 N -0.34 -3.41 3.61 -70.17 -0.25 -3.67 16 3 N -0.23 -2.17 10.69 33.70 0.36 -1.81 16 4 C 0.08 0.73 6.73 -82.30 -0.55 0.17 16 5 C -0.03 -0.28 5.81 -104.63 -0.61 -0.89 16 6 C -0.19 -1.90 9.75 -39.01 -0.38 -2.28 16 7 C 0.48 5.62 7.48 -15.22 -0.11 5.51 16 8 O -0.54 -7.82 17.11 4.86 0.08 -7.74 16 9 C 0.15 1.21 6.31 -5.13 -0.03 1.18 16 10 N -1.01 -9.23 3.19 -115.15 -0.37 -9.60 16 11 S 2.60 33.37 5.47 -107.50 -0.59 32.78 16 12 O -0.96 -15.04 16.63 -57.54 -0.96 -16.00 16 13 O -0.95 -14.53 16.76 -57.54 -0.96 -15.50 16 14 C -0.61 -8.17 6.18 37.16 0.23 -7.94 16 15 C -0.11 -2.02 5.16 -26.73 -0.14 -2.16 16 16 C 0.03 0.76 4.97 -27.88 -0.14 0.62 16 17 C -0.53 -14.45 9.11 -34.44 -0.31 -14.76 16 18 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -25.98 13.29 55.43 0.74 -25.24 16 21 Si 0.89 21.16 29.54 -169.99 -5.02 16.13 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 C 0.12 0.84 6.31 -3.78 -0.02 0.82 16 26 C -0.07 -0.48 6.12 -28.02 -0.17 -0.65 16 27 H 0.10 0.44 8.05 -51.93 -0.42 0.02 16 28 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.17 1.32 8.06 -52.49 -0.42 0.90 16 31 H 0.12 1.00 6.87 -51.93 -0.36 0.65 16 32 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.13 1.51 8.14 -51.93 -0.42 1.09 16 34 H 0.13 1.52 8.14 -51.92 -0.42 1.09 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 40 H 0.11 0.72 7.12 -51.93 -0.37 0.35 16 41 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 371.07 15.07 5.59 5.59 Total: -1.00 -37.22 371.07 -9.29 -46.51 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: -6.18 Total: -3.78 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: -1.73 Total: -17.69 kcal Atomic # 7 Polarization: -40.79 SS G_CDS: 0.48 Total: -40.31 kcal Atomic # 8 Polarization: -37.39 SS G_CDS: -1.84 Total: -39.23 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 33.37 SS G_CDS: -0.59 Total: 32.78 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -37.22 -9.29 -46.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319002059.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.066 kcal (2) G-P(sol) polarization free energy of solvation -37.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds