Wall clock time and date at job start Wed Apr 1 2020 00:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28084 * 119.15878 * 2 1 4 4 C 1.31200 * 122.96803 * 179.09342 * 3 2 1 5 5 C 1.39827 * 119.66139 * 359.52614 * 4 3 2 6 6 C 1.36834 * 118.75770 * 1.11488 * 5 4 3 7 7 C 1.34692 * 119.15665 * 179.72300 * 2 1 3 8 8 O 1.22066 * 120.52031 * 1.29242 * 7 2 1 9 9 C 1.50509 * 122.52259 * 181.56516 * 5 4 3 10 10 N 1.46792 * 109.46060 * 348.19060 * 9 5 4 11 11 S 1.65602 * 121.26680 * 224.51228 * 10 9 5 12 12 O 1.42095 * 104.27775 * 26.09168 * 11 10 9 13 13 O 1.42098 * 104.27424 * 153.94839 * 11 10 9 14 14 C 1.81394 * 104.44750 * 270.01854 * 11 10 9 15 15 C 1.53001 * 109.47291 * 180.02562 * 14 11 10 16 16 C 1.52998 * 109.47331 * 180.02562 * 15 14 11 17 17 C 1.50705 * 109.47173 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99753 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00127 * 180.02562 * 17 16 15 20 20 N 1.31511 * 119.99986 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99831 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47526 * 59.99566 * 21 19 17 23 23 H 1.48507 * 109.46837 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47138 * 299.99187 * 21 19 17 25 25 C 1.47169 * 117.46210 * 44.52965 * 10 9 5 26 26 C 1.50625 * 117.99834 * 179.18304 * 4 3 2 27 27 H 1.08994 * 109.47250 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47369 * 120.00569 * 1 2 3 29 29 H 1.08999 * 109.47223 * 240.00313 * 1 2 3 30 30 H 1.07992 * 121.02080 * 179.28914 * 6 5 4 31 31 H 1.08997 * 109.47210 * 228.19362 * 9 5 4 32 32 H 1.09002 * 109.47300 * 108.18901 * 9 5 4 33 33 H 1.08998 * 109.47418 * 300.00233 * 14 11 10 34 34 H 1.09000 * 109.47466 * 60.00442 * 14 11 10 35 35 H 1.08998 * 109.46876 * 300.00315 * 15 14 11 36 36 H 1.08996 * 109.47159 * 59.99834 * 15 14 11 37 37 H 1.08998 * 109.47265 * 299.99914 * 16 15 14 38 38 H 1.08996 * 109.47267 * 59.99738 * 16 15 14 39 39 H 0.96996 * 120.00016 * 180.02562 * 20 19 17 40 40 H 1.09002 * 109.71855 * 175.66064 * 25 10 9 41 41 H 1.09006 * 109.75439 * 55.03767 * 25 10 9 42 42 H 1.08997 * 109.22477 * 280.15503 * 26 4 3 43 43 H 1.09007 * 109.21928 * 39.54563 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.0891 1.1185 0.0000 4 6 3.3980 1.2058 0.0174 5 6 4.1689 0.0396 0.0471 6 6 3.5317 -1.1713 0.0339 7 6 2.1212 -1.1762 0.0057 8 8 1.5052 -2.2299 -0.0129 9 6 5.6728 0.0648 0.1030 10 7 6.1492 1.4274 -0.1640 11 16 7.4216 1.7082 -1.1860 12 8 7.4141 0.5949 -2.0690 13 8 7.1999 3.0266 -1.6675 14 6 8.8833 1.6598 -0.1130 15 6 10.1392 1.9093 -0.9503 16 6 11.3722 1.8679 -0.0454 17 6 12.6092 2.1143 -0.8701 18 1 12.5245 2.2831 -1.9335 19 6 13.8492 2.1232 -0.2673 20 7 13.9524 1.9172 1.0274 21 14 15.3824 2.4294 -1.2896 22 1 15.2882 3.7628 -1.9361 23 1 16.5791 2.3890 -0.4112 24 1 15.4988 1.3800 -2.3338 25 6 5.4533 2.5343 0.5116 26 6 4.0155 2.5795 -0.0036 27 1 -0.3633 1.0276 -0.0005 28 1 -0.3634 -0.5139 -0.8899 29 1 -0.3633 -0.5138 0.8900 30 1 4.0914 -2.0948 0.0444 31 1 6.0757 -0.6147 -0.6480 32 1 6.0049 -0.2489 1.0926 33 1 8.7980 2.4314 0.6522 34 1 8.9522 0.6818 0.3633 35 1 10.2247 1.1381 -1.7158 36 1 10.0702 2.8874 -1.4263 37 1 11.2869 2.6390 0.7203 38 1 11.4411 0.8896 0.4303 39 1 14.8247 1.9238 1.4515 40 1 5.9544 3.4757 0.2864 41 1 5.4529 2.3665 1.5887 42 1 4.0121 2.9589 -1.0254 43 1 3.4291 3.2462 0.6287 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319002059.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:21 Heat of formation + Delta-G solvation = -72.726160 kcal Electronic energy + Delta-G solvation = -27327.470046 eV Core-core repulsion = 23307.014916 eV Total energy + Delta-G solvation = -4020.455131 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.18129 -39.65257 -38.40982 -38.25183 -37.02725 -36.42147 -35.28273 -34.12860 -34.00721 -31.01227 -29.74465 -29.57263 -26.60602 -25.79750 -25.50528 -24.16919 -22.59832 -22.12962 -20.25506 -19.41894 -18.65358 -18.51986 -18.06581 -17.88076 -17.50063 -17.15979 -16.84309 -16.46859 -16.12749 -15.67244 -15.54706 -15.33700 -14.78451 -14.48458 -14.44852 -14.27782 -14.10932 -13.95198 -13.77115 -13.52172 -13.47143 -13.28008 -13.16323 -12.96856 -12.94632 -12.84673 -12.71066 -12.62353 -12.29111 -12.15560 -11.96839 -11.69985 -11.35218 -11.16540 -10.97493 -10.90143 -10.54537 -10.09312 -9.47723 -8.20544 -6.30937 -0.80289 -0.60487 0.44092 1.22120 1.42150 1.43953 1.51840 1.61502 2.23229 2.41546 2.83110 2.94676 3.09727 3.13216 3.28926 3.44648 3.64786 3.74775 3.96715 3.98583 4.19460 4.28089 4.29798 4.42557 4.44172 4.46591 4.53176 4.57310 4.60397 4.64281 4.69962 4.81642 4.88427 5.01967 5.03115 5.09955 5.16490 5.21995 5.46853 5.48924 5.67656 5.82756 6.22694 6.46830 6.84958 7.06098 7.38226 8.90405 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.030329 B = 0.002180 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.996537 B =12839.312710 C =13147.783177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.345 5.345 3 N -0.232 5.232 4 C 0.076 3.924 5 C -0.024 4.024 6 C -0.206 4.206 7 C 0.463 3.537 8 O -0.578 6.578 9 C 0.146 3.854 10 N -1.002 6.002 11 S 2.626 3.374 12 O -0.987 6.987 13 O -0.977 6.977 14 C -0.605 4.605 15 C -0.108 4.108 16 C 0.031 3.969 17 C -0.552 4.552 18 H 0.059 0.941 19 C 0.003 3.997 20 N -0.929 5.929 21 Si 0.960 3.040 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.269 1.269 25 C 0.113 3.887 26 C -0.067 4.067 27 H 0.122 0.878 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.180 0.820 31 H 0.118 0.882 32 H 0.135 0.865 33 H 0.151 0.849 34 H 0.148 0.852 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.005 0.995 38 H 0.003 0.997 39 H 0.264 0.736 40 H 0.115 0.885 41 H 0.113 0.887 42 H 0.089 0.911 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.494 0.485 2.890 25.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.164 5.164 3 N -0.057 5.057 4 C -0.094 4.094 5 C -0.032 4.032 6 C -0.236 4.236 7 C 0.264 3.736 8 O -0.461 6.461 9 C 0.021 3.979 10 N -0.840 5.840 11 S 2.723 3.277 12 O -0.977 6.977 13 O -0.967 6.967 14 C -0.736 4.736 15 C -0.147 4.147 16 C -0.007 4.007 17 C -0.590 4.590 18 H 0.078 0.922 19 C -0.195 4.195 20 N -0.568 5.568 21 Si 0.784 3.216 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.194 1.194 25 C -0.011 4.011 26 C -0.108 4.108 27 H 0.141 0.859 28 H 0.104 0.896 29 H 0.109 0.891 30 H 0.198 0.802 31 H 0.136 0.864 32 H 0.153 0.847 33 H 0.169 0.831 34 H 0.166 0.834 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.023 0.977 38 H 0.022 0.978 39 H 0.073 0.927 40 H 0.133 0.867 41 H 0.131 0.869 42 H 0.107 0.893 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -26.680 0.515 2.051 26.763 hybrid contribution 1.729 -0.845 0.161 1.931 sum -24.951 -0.330 2.213 25.051 Atomic orbital electron populations 1.22372 0.72446 1.06590 1.04734 1.46791 1.10737 1.02429 1.56418 1.71000 1.12093 1.11570 1.10987 1.21884 0.87236 0.97776 1.02473 1.21017 0.98559 0.92452 0.91162 1.22764 0.92475 1.00770 1.07594 1.18295 0.90528 0.84127 0.80619 1.90960 1.70354 1.30331 1.54500 1.20637 0.87776 0.83496 1.05988 1.57748 1.47790 1.13093 1.65329 1.04473 0.75352 0.73011 0.74840 1.93525 1.86761 1.54671 1.62760 1.93537 1.84660 1.40024 1.78520 1.30533 1.14510 1.13352 1.15237 1.21319 0.93434 1.01751 0.98245 1.18959 0.91339 0.96009 0.94416 1.21733 0.92948 1.49019 0.95344 0.92243 1.25900 1.02576 0.94902 0.96143 1.70050 1.25285 1.50601 1.10907 0.85580 0.78224 0.79187 0.78572 1.19246 1.20768 1.19364 1.21809 0.90720 0.89641 0.98971 1.20659 0.95867 0.89469 1.04792 0.85929 0.89565 0.89100 0.80233 0.86427 0.84744 0.83070 0.83352 0.91776 0.91520 0.97652 0.97813 0.92680 0.86723 0.86877 0.89319 0.85559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.95 10.23 127.77 1.31 2.26 16 2 N -0.34 -6.54 3.61 -494.03 -1.79 -8.33 16 3 N -0.23 -4.01 10.69 -47.30 -0.51 -4.52 16 4 C 0.08 1.20 6.73 43.01 0.29 1.49 16 5 C -0.02 -0.39 5.81 -19.87 -0.12 -0.50 16 6 C -0.21 -3.83 9.75 22.64 0.22 -3.61 16 7 C 0.46 10.83 7.48 84.95 0.64 11.47 16 8 O -0.58 -17.25 17.11 -5.53 -0.09 -17.34 16 9 C 0.15 1.93 6.31 85.52 0.54 2.47 16 10 N -1.00 -15.49 3.19 -518.22 -1.65 -17.14 16 11 S 2.63 62.77 5.47 -56.49 -0.31 62.46 16 12 O -0.99 -29.92 16.63 -127.65 -2.12 -32.04 16 13 O -0.98 -28.29 16.76 -127.65 -2.14 -30.43 16 14 C -0.61 -15.22 6.18 71.98 0.44 -14.77 16 15 C -0.11 -4.04 5.16 30.59 0.16 -3.88 16 16 C 0.03 1.52 4.97 29.85 0.15 1.67 16 17 C -0.55 -30.44 9.11 25.60 0.23 -30.20 16 18 H 0.06 3.16 7.74 -2.91 -0.02 3.13 16 19 C 0.00 0.18 5.46 84.65 0.46 0.64 16 20 N -0.93 -54.32 13.29 21.45 0.28 -54.03 16 21 Si 0.96 43.21 29.54 68.60 2.03 45.23 16 22 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 23 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 24 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 25 C 0.11 1.17 6.31 86.19 0.54 1.72 16 26 C -0.07 -0.75 6.12 29.76 0.18 -0.57 16 27 H 0.12 0.87 8.05 -2.39 -0.02 0.86 16 28 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.18 2.69 8.06 -2.91 -0.02 2.67 16 31 H 0.12 1.72 6.87 -2.39 -0.02 1.70 16 32 H 0.14 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.15 3.13 8.14 -2.39 -0.02 3.11 16 34 H 0.15 3.14 8.14 -2.39 -0.02 3.12 16 35 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 37 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 38 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 39 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 40 H 0.11 1.14 7.12 -2.39 -0.02 1.12 16 41 H 0.11 0.53 8.14 -2.38 -0.02 0.51 16 42 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.13 0.79 8.14 -2.38 -0.02 0.77 16 Total: -1.00 -81.32 371.07 -0.23 -81.55 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: 1.02 Total: 6.43 kcal Atomic # 6 Polarization: -36.89 SS G_CDS: 5.05 Total: -31.84 kcal Atomic # 7 Polarization: -80.36 SS G_CDS: -3.66 Total: -84.02 kcal Atomic # 8 Polarization: -75.46 SS G_CDS: -4.36 Total: -79.81 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 16 Polarization: 62.77 SS G_CDS: -0.31 Total: 62.46 kcal Total: -81.32 -0.23 -81.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319002059.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.823 kcal (2) G-P(sol) polarization free energy of solvation -81.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds