Wall clock time and date at job start Tue Mar 31 2020 23:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.46804 * 2 1 4 4 C 1.46496 * 119.99858 * 90.00221 * 3 2 1 5 5 C 1.52997 * 109.46953 * 269.99454 * 4 3 2 6 6 N 1.46506 * 109.47289 * 180.02562 * 5 4 3 7 7 C 1.34774 * 120.00072 * 180.02562 * 6 5 4 8 8 O 1.21576 * 120.00005 * 0.02562 * 7 6 5 9 9 C 1.47516 * 119.99812 * 180.02562 * 7 6 5 10 10 O 1.34644 * 126.94451 * 0.02562 * 9 7 6 11 11 N 1.20884 * 111.46918 * 179.97438 * 10 9 7 12 12 C 1.30135 * 111.97991 * 0.02562 * 11 10 9 13 13 C 1.36817 * 126.94078 * 179.70645 * 9 7 6 14 14 C 1.50697 * 128.07860 * 0.02562 * 13 9 7 15 15 C 1.34774 * 119.99782 * 269.99447 * 3 2 1 16 16 O 1.21285 * 119.99988 * 180.02562 * 15 3 2 17 17 C 1.50706 * 120.00178 * 0.02562 * 15 3 2 18 18 S 1.80997 * 109.47088 * 179.97438 * 17 15 3 19 19 C 1.76197 * 99.99908 * 179.97438 * 18 17 15 20 20 H 1.08003 * 119.99960 * 359.97438 * 19 18 17 21 21 C 1.38801 * 120.00003 * 180.02562 * 19 18 17 22 22 N 1.31631 * 119.99850 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99999 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47330 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47645 * 119.99919 * 23 21 19 26 26 H 1.48505 * 109.47008 * 239.99705 * 23 21 19 27 27 H 1.09001 * 109.47714 * 300.00032 * 1 2 3 28 28 H 1.08996 * 109.47389 * 60.00345 * 1 2 3 29 29 H 1.09003 * 109.47066 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47069 * 239.99984 * 2 1 3 31 31 H 1.09000 * 109.46920 * 119.99791 * 2 1 3 32 32 H 1.09001 * 109.47062 * 149.99949 * 4 3 2 33 33 H 1.08996 * 109.47565 * 29.99414 * 4 3 2 34 34 H 1.09001 * 109.47289 * 60.00079 * 5 4 3 35 35 H 1.09004 * 109.47261 * 300.00335 * 5 4 3 36 36 H 0.97001 * 119.99251 * 0.02562 * 6 5 4 37 37 H 1.07998 * 126.70307 * 179.97438 * 12 11 10 38 38 H 1.09005 * 109.47185 * 89.99849 * 14 13 9 39 39 H 1.09001 * 109.46955 * 209.99531 * 14 13 9 40 40 H 1.08991 * 109.47189 * 329.99684 * 14 13 9 41 41 H 1.08998 * 109.46409 * 299.99459 * 17 15 3 42 42 H 1.08994 * 109.47146 * 59.99267 * 17 15 3 43 43 H 0.97002 * 119.99466 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0718 1.2687 5 6 0.9874 2.7931 1.7103 6 7 1.2317 3.4842 2.9788 7 6 0.2434 4.1906 3.5626 8 8 -0.8509 4.2539 3.0367 9 6 0.4896 4.8869 4.8395 10 8 1.6396 4.9113 5.5394 11 7 1.5300 5.5689 6.5478 12 6 0.3350 6.0680 6.6763 13 6 -0.4028 5.6434 5.5489 14 6 -1.8386 5.9495 5.2088 15 6 2.2429 2.0165 -1.1672 16 8 2.6476 3.1599 -1.1672 17 6 1.9914 1.3062 -2.4724 18 16 2.3829 2.4153 -3.8481 19 6 2.0099 1.3592 -5.2082 20 1 1.6556 0.3545 -5.0304 21 6 2.1724 1.8180 -6.5081 22 7 2.6047 3.0422 -6.7247 23 14 1.7762 0.6985 -7.9500 24 1 1.3111 -0.6172 -7.4421 25 1 0.7086 1.3157 -8.7773 26 1 2.9946 0.5067 -8.7771 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.0643 2.7985 1.1384 33 1 2.5504 1.3452 2.0284 34 1 0.1855 2.0664 1.8406 35 1 0.6993 3.5197 0.9506 36 1 2.1048 3.4333 3.3985 37 1 -0.0216 6.6891 7.4846 38 1 -2.4852 5.1861 5.6416 39 1 -2.1076 6.9254 5.6131 40 1 -1.9615 5.9584 4.1259 41 1 2.6214 0.4186 -2.5301 42 1 0.9434 1.0123 -2.5299 43 1 2.7178 3.3629 -7.6331 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001356199126.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:50 Heat of formation + Delta-G solvation = -9.004104 kcal Electronic energy + Delta-G solvation = -26455.081705 eV Core-core repulsion = 22437.389771 eV Total energy + Delta-G solvation = -4017.691935 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.43201 -40.17075 -39.52842 -36.35523 -35.44337 -34.80083 -32.84372 -32.44211 -31.37496 -29.93854 -28.97912 -27.85289 -25.51704 -24.58489 -23.39223 -23.28212 -22.25697 -21.06206 -19.50305 -18.77936 -18.19376 -17.74798 -16.90464 -16.50907 -16.29602 -15.78131 -15.55016 -15.27783 -14.81765 -14.80124 -14.11069 -14.02643 -13.88608 -13.77380 -13.63154 -13.58251 -13.35821 -13.10048 -13.05395 -12.59559 -12.40059 -11.92974 -11.89183 -11.69639 -11.55998 -11.10899 -11.04908 -11.02842 -10.81467 -10.76454 -10.67130 -9.92626 -9.81447 -9.46385 -9.43669 -9.08657 -8.75246 -8.24181 -6.51883 -6.23105 -3.93805 0.38736 1.64250 2.14395 2.61744 2.63164 2.96358 3.06386 3.20687 3.26237 3.30550 3.57804 3.73147 4.16344 4.18663 4.32365 4.58683 4.59201 4.66353 4.84279 4.90105 4.98841 5.11972 5.15322 5.16924 5.22752 5.28225 5.31571 5.44121 5.49607 5.57578 5.69975 5.73356 5.75060 5.84006 5.88604 5.93623 6.03809 6.20583 6.54351 6.90916 7.41026 7.55091 7.58652 7.68301 8.34007 8.46153 9.22428 10.84349 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.021527 B = 0.001965 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.371989 B =14242.821141 C =14528.264718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.106 3.894 3 N -0.618 5.618 4 C 0.108 3.892 5 C 0.100 3.900 6 N -0.710 5.710 7 C 0.607 3.393 8 O -0.506 6.506 9 C -0.093 4.093 10 O 0.116 5.884 11 N -0.342 5.342 12 C -0.015 4.015 13 C -0.118 4.118 14 C -0.088 4.088 15 C 0.535 3.465 16 O -0.511 6.511 17 C -0.150 4.150 18 S -0.062 6.062 19 C -0.534 4.534 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.280 1.280 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.408 0.592 37 H 0.199 0.801 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.531 -2.092 26.607 27.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.017 4.017 3 N -0.354 5.354 4 C -0.017 4.017 5 C -0.024 4.024 6 N -0.362 5.362 7 C 0.390 3.610 8 O -0.381 6.381 9 C -0.159 4.159 10 O 0.043 5.957 11 N -0.041 5.041 12 C -0.193 4.193 13 C -0.122 4.122 14 C -0.145 4.145 15 C 0.323 3.677 16 O -0.384 6.384 17 C -0.301 4.301 18 S 0.164 5.836 19 C -0.682 4.682 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.111 0.889 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.243 0.757 37 H 0.216 0.784 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.110 0.890 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.554 -0.163 26.791 27.175 hybrid contribution -1.050 -1.933 -0.834 2.353 sum -5.604 -2.096 25.956 26.637 Atomic orbital electron populations 1.22324 0.95860 1.02411 1.02929 1.21607 0.94582 0.82044 1.03461 1.47895 1.68165 1.14343 1.04988 1.21447 0.96770 0.97405 0.86034 1.22037 0.99057 0.96936 0.84388 1.45722 1.14712 1.51263 1.24530 1.16425 0.84774 0.78622 0.81198 1.90879 1.23405 1.61286 1.62502 1.24010 0.87514 1.06373 0.98010 1.84955 1.32865 1.52625 1.25296 1.73770 1.20996 1.07385 1.01901 1.25034 0.89602 1.03715 1.00909 1.21680 0.99200 0.97631 0.93727 1.20359 0.87664 1.02069 1.04403 1.20420 0.76200 0.86494 0.84603 1.90712 1.43587 1.17402 1.86729 1.23582 1.04903 1.04543 0.97049 1.85418 1.86841 1.17897 0.93398 1.22888 1.51736 1.01458 0.92151 0.90864 1.24999 0.94668 0.95555 0.98409 1.70029 1.42996 1.15621 1.21576 0.86117 0.78177 0.80073 0.81126 1.19602 1.20563 1.20580 0.92309 0.91731 0.91458 0.89632 0.90468 0.88944 0.90013 0.90482 0.90012 0.75745 0.78396 0.90055 0.90611 0.88999 0.89184 0.89069 0.92228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.62 10.24 37.16 0.38 -1.24 16 2 C 0.11 1.00 5.98 -4.04 -0.02 0.97 16 3 N -0.62 -7.72 2.47 -173.69 -0.43 -8.15 16 4 C 0.11 1.07 5.56 -4.05 -0.02 1.05 16 5 C 0.10 1.05 6.00 -4.04 -0.02 1.02 16 6 N -0.71 -6.37 5.55 -61.35 -0.34 -6.71 16 7 C 0.61 6.56 7.82 -12.48 -0.10 6.46 16 8 O -0.51 -6.91 15.12 5.30 0.08 -6.83 16 9 C -0.09 -0.90 7.29 -36.32 -0.26 -1.16 16 10 O 0.12 1.09 11.04 15.55 0.17 1.26 16 11 N -0.34 -3.30 12.04 30.46 0.37 -2.93 16 12 C -0.01 -0.11 12.14 -17.12 -0.21 -0.32 16 13 C -0.12 -1.00 6.37 -103.99 -0.66 -1.66 16 14 C -0.09 -0.61 9.95 36.00 0.36 -0.25 16 15 C 0.53 9.54 7.69 -10.98 -0.08 9.46 16 16 O -0.51 -11.08 15.44 5.55 0.09 -10.99 16 17 C -0.15 -2.94 4.71 36.01 0.17 -2.77 16 18 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 19 C -0.53 -14.99 9.50 30.94 0.29 -14.70 16 20 H 0.07 1.94 7.80 -52.48 -0.41 1.54 16 21 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 22 N -0.87 -25.97 13.22 55.49 0.73 -25.23 16 23 Si 0.92 21.22 29.55 -169.99 -5.02 16.19 16 24 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H 0.06 0.52 6.26 -51.93 -0.33 0.19 16 28 H 0.06 0.73 7.22 -51.93 -0.37 0.35 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 0.84 6.44 -51.93 -0.33 0.50 16 31 H 0.08 0.52 7.89 -51.93 -0.41 0.11 16 32 H 0.09 1.05 7.42 -51.93 -0.39 0.66 16 33 H 0.08 0.54 7.89 -51.93 -0.41 0.13 16 34 H 0.08 0.78 6.26 -51.93 -0.33 0.46 16 35 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.41 2.61 8.30 -40.82 -0.34 2.28 16 37 H 0.20 0.80 8.06 -52.49 -0.42 0.38 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.09 0.82 6.73 -51.93 -0.35 0.47 16 41 H 0.09 1.62 7.40 -51.92 -0.38 1.23 16 42 H 0.09 1.66 7.18 -51.92 -0.37 1.29 16 43 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 380.83 15.07 5.74 5.74 Total: -1.00 -36.03 380.83 -6.78 -42.81 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -5.67 Total: -0.10 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: -0.28 Total: -1.18 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: 0.33 Total: -43.03 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: 0.34 Total: -16.56 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.03 -6.78 -42.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356199126.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.807 kcal (2) G-P(sol) polarization free energy of solvation -36.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds