Wall clock time and date at job start Tue Mar 31 2020 23:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21281 * 119.99478 * 2 1 4 4 N 1.34776 * 120.00052 * 180.02562 * 2 1 3 5 5 C 1.39278 * 119.99774 * 184.00351 * 4 2 1 6 6 C 1.39473 * 120.55419 * 334.06466 * 5 4 2 7 7 C 1.38279 * 118.42691 * 180.24908 * 6 5 4 8 8 C 1.38780 * 119.46591 * 359.47884 * 7 6 5 9 9 N 1.31383 * 121.09265 * 0.28350 * 8 7 6 10 10 C 1.32852 * 121.71211 * 359.97438 * 9 8 7 11 11 C 1.47778 * 119.79361 * 180.02562 * 10 9 8 12 12 O 1.21576 * 120.00279 * 174.43316 * 11 10 9 13 13 N 1.34779 * 119.99850 * 354.43180 * 11 10 9 14 14 C 1.39897 * 119.99424 * 185.52547 * 13 11 10 15 15 C 1.38952 * 120.00244 * 214.39784 * 14 13 11 16 16 C 1.37995 * 119.99533 * 179.74485 * 15 14 13 17 17 C 1.38909 * 120.00556 * 0.51027 * 16 15 14 18 18 O 1.35770 * 120.00076 * 179.74242 * 17 16 15 19 19 C 1.34810 * 117.00483 * 174.66061 * 18 17 16 20 20 H 1.07998 * 119.99782 * 5.03465 * 19 18 17 21 21 C 1.38640 * 120.00159 * 185.04210 * 19 18 17 22 22 N 1.31567 * 119.99666 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99847 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47086 * 89.99863 * 23 21 19 25 25 H 1.48497 * 109.46887 * 209.99801 * 23 21 19 26 26 H 1.48501 * 109.47263 * 329.99873 * 23 21 19 27 27 C 1.38919 * 120.00472 * 359.76865 * 17 16 15 28 28 C 1.37988 * 120.00707 * 359.97438 * 27 17 16 29 29 H 1.08993 * 109.47226 * 269.99368 * 1 2 3 30 30 H 1.09001 * 109.47125 * 30.00159 * 1 2 3 31 31 H 1.09000 * 109.47219 * 149.99477 * 1 2 3 32 32 H 0.96998 * 120.00135 * 3.99821 * 4 2 1 33 33 H 1.08005 * 120.78967 * 0.02562 * 6 5 4 34 34 H 1.08008 * 120.26934 * 179.76075 * 7 6 5 35 35 H 1.08000 * 119.45446 * 180.25269 * 8 7 6 36 36 H 0.97000 * 120.00243 * 5.52281 * 13 11 10 37 37 H 1.07999 * 119.99933 * 0.02562 * 15 14 13 38 38 H 1.08000 * 119.99718 * 180.25816 * 16 15 14 39 39 H 0.97004 * 119.99777 * 180.02562 * 22 21 19 40 40 H 1.08004 * 119.99640 * 179.97438 * 27 17 16 41 41 H 1.07997 * 120.00226 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5711 -1.1686 0.0837 6 6 4.3094 -0.0714 -0.3593 7 6 5.6877 -0.1219 -0.2598 8 6 6.2922 -1.2471 0.2828 9 7 5.5769 -2.2677 0.6985 10 6 4.2507 -2.2694 0.6196 11 6 3.4880 -3.4402 1.1006 12 8 2.2730 -3.4062 1.1245 13 7 4.1394 -4.5458 1.5127 14 6 3.4189 -5.6941 1.8583 15 6 3.8723 -6.5170 2.8820 16 6 3.1587 -7.6468 3.2262 17 6 1.9927 -7.9671 2.5425 18 8 1.2934 -9.0816 2.8778 19 6 0.1152 -9.2762 2.2523 20 1 -0.1948 -8.6063 1.4640 21 6 -0.6986 -10.3363 2.6212 22 7 -0.3208 -11.1525 3.5813 23 14 -2.3316 -10.6055 1.7549 24 1 -2.1290 -11.4929 0.5815 25 1 -3.2918 -11.2384 2.6943 26 1 -2.8720 -9.2992 1.3001 27 6 1.5424 -7.1476 1.5152 28 6 2.2528 -6.0149 1.1741 29 1 -0.3633 -0.0001 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3634 -0.8899 -0.5139 32 1 1.6977 -2.0062 -0.0595 33 1 3.8165 0.7958 -0.7736 34 1 6.2887 0.7096 -0.5974 35 1 7.3685 -1.2846 0.3642 36 1 5.1077 -4.5453 1.5697 37 1 4.7808 -6.2700 3.4111 38 1 3.5089 -8.2843 4.0246 39 1 -0.8901 -11.8945 3.8392 40 1 0.6360 -7.3970 0.9834 41 1 1.9029 -5.3780 0.3752 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361726044.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:50:17 Heat of formation + Delta-G solvation = -17.265384 kcal Electronic energy + Delta-G solvation = -28051.219719 eV Core-core repulsion = 23897.725596 eV Total energy + Delta-G solvation = -4153.494122 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.51900 -40.02248 -39.33976 -38.57847 -36.65152 -35.40498 -34.01626 -32.66699 -32.18690 -31.42714 -30.26892 -29.31657 -27.96839 -25.48679 -24.80674 -23.91833 -22.49420 -21.69870 -20.98168 -20.32172 -18.55646 -18.26291 -17.88908 -17.47678 -17.20591 -16.64931 -16.10079 -15.63865 -15.37340 -15.22836 -14.71372 -14.55083 -14.35271 -14.06689 -13.75453 -13.70011 -13.53374 -13.46219 -13.08261 -12.91118 -12.83805 -12.63167 -12.56616 -11.82631 -11.62032 -11.59511 -11.36889 -11.06485 -10.80638 -10.63177 -10.46906 -10.24374 -10.04529 -9.68454 -9.59657 -9.28583 -8.76568 -8.61673 -8.26432 -6.97890 -6.47953 -4.05430 0.29199 0.85710 2.03569 2.15557 2.20349 2.68543 2.79456 3.08679 3.11876 3.13621 3.17663 3.61099 3.94117 3.95510 4.30244 4.49338 4.53633 4.54872 4.70436 4.86618 4.99957 5.06197 5.07578 5.10067 5.23064 5.50787 5.56663 5.62834 5.66699 5.80141 5.85596 6.08318 6.13098 6.25436 6.35947 6.66701 6.78793 6.93137 6.99106 7.08524 7.23849 7.37008 7.38417 7.63414 7.69278 7.73923 7.96774 8.20995 8.97602 9.66551 10.69812 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015198 B = 0.002500 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.942336 B =11196.972826 C =12786.906551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.514 3.486 3 O -0.534 6.534 4 N -0.652 5.652 5 C 0.163 3.837 6 C -0.104 4.104 7 C -0.128 4.128 8 C 0.075 3.925 9 N -0.437 5.437 10 C 0.041 3.959 11 C 0.569 3.431 12 O -0.533 6.533 13 N -0.631 5.631 14 C 0.030 3.970 15 C -0.087 4.087 16 C -0.177 4.177 17 C 0.148 3.852 18 O -0.175 6.175 19 C -0.391 4.391 20 H 0.093 0.907 21 C 0.039 3.961 22 N -0.861 5.861 23 Si 0.941 3.059 24 H -0.273 1.273 25 H -0.277 1.277 26 H -0.267 1.267 27 C -0.220 4.220 28 C -0.061 4.061 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.430 0.570 33 H 0.168 0.832 34 H 0.144 0.856 35 H 0.165 0.835 36 H 0.414 0.586 37 H 0.117 0.883 38 H 0.123 0.877 39 H 0.270 0.730 40 H 0.131 0.869 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.651 20.596 -8.799 24.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.303 3.697 3 O -0.411 6.411 4 N -0.302 5.302 5 C 0.062 3.938 6 C -0.132 4.132 7 C -0.148 4.148 8 C -0.087 4.087 9 N -0.148 5.148 10 C -0.099 4.099 11 C 0.355 3.645 12 O -0.410 6.410 13 N -0.274 5.274 14 C -0.062 4.062 15 C -0.108 4.108 16 C -0.197 4.197 17 C 0.094 3.906 18 O -0.078 6.078 19 C -0.467 4.467 20 H 0.110 0.890 21 C -0.165 4.165 22 N -0.496 5.496 23 Si 0.766 3.234 24 H -0.199 1.199 25 H -0.202 1.202 26 H -0.191 1.191 27 C -0.240 4.240 28 C -0.081 4.081 29 H 0.120 0.880 30 H 0.116 0.884 31 H 0.106 0.894 32 H 0.276 0.724 33 H 0.185 0.815 34 H 0.161 0.839 35 H 0.182 0.818 36 H 0.250 0.750 37 H 0.135 0.865 38 H 0.141 0.859 39 H 0.080 0.920 40 H 0.149 0.851 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 8.419 20.164 -8.138 23.317 hybrid contribution -0.840 0.252 -0.729 1.140 sum 7.579 20.416 -8.867 23.513 Atomic orbital electron populations 1.21887 0.90005 1.05428 1.05697 1.21196 0.91394 0.82732 0.74349 1.90625 1.70317 1.31699 1.48493 1.44094 1.04407 1.12023 1.69709 1.18709 0.84559 0.95038 0.95495 1.22150 0.93771 0.99036 0.98265 1.22347 0.94881 0.99405 0.98193 1.22744 1.00418 0.88940 0.96577 1.67516 1.05106 1.28202 1.14022 1.20871 0.90453 0.95519 1.03084 1.17716 0.86651 0.81806 0.78284 1.90591 1.13052 1.81706 1.55668 1.42975 1.10667 1.10230 1.63542 1.17246 0.97773 0.89986 1.01231 1.20386 0.99805 0.95095 0.95468 1.20012 0.96499 0.99551 1.03595 1.19407 0.91794 0.86922 0.92477 1.83974 1.31194 1.33867 1.58741 1.21340 0.93693 1.13843 1.17841 0.88980 1.25296 0.99357 0.95285 0.96570 1.70043 1.37532 1.14960 1.27059 0.85708 0.79986 0.79033 0.78709 1.19860 1.20237 1.19128 1.21060 1.03409 0.97347 1.02148 1.20636 0.93810 0.95649 0.97987 0.87991 0.88352 0.89427 0.72407 0.81451 0.83867 0.81808 0.74973 0.86533 0.85924 0.91969 0.85116 0.86404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.17 10.31 36.01 0.37 -0.80 16 2 C 0.51 5.45 7.83 -10.99 -0.09 5.36 16 3 O -0.53 -6.94 14.08 5.56 0.08 -6.86 16 4 N -0.65 -7.37 4.82 -9.60 -0.05 -7.42 16 5 C 0.16 1.97 6.47 -83.35 -0.54 1.43 16 6 C -0.10 -1.08 8.88 -39.11 -0.35 -1.43 16 7 C -0.13 -1.01 10.10 -39.37 -0.40 -1.40 16 8 C 0.08 0.63 11.17 -17.54 -0.20 0.43 16 9 N -0.44 -4.90 9.55 -9.69 -0.09 -4.99 16 10 C 0.04 0.53 6.76 -82.86 -0.56 -0.03 16 11 C 0.57 8.41 7.50 -12.36 -0.09 8.32 16 12 O -0.53 -8.71 11.59 5.30 0.06 -8.65 16 13 N -0.63 -9.22 5.33 -10.69 -0.06 -9.28 16 14 C 0.03 0.53 6.25 -83.65 -0.52 0.00 16 15 C -0.09 -1.52 9.96 -39.41 -0.39 -1.92 16 16 C -0.18 -3.62 9.98 -39.42 -0.39 -4.01 16 17 C 0.15 3.52 6.65 -39.08 -0.26 3.26 16 18 O -0.17 -4.90 9.75 0.05 0.00 -4.90 16 19 C -0.39 -10.77 9.48 30.88 0.29 -10.48 16 20 H 0.09 2.35 5.20 -52.49 -0.27 2.07 16 21 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 22 N -0.86 -24.96 13.67 55.48 0.76 -24.20 16 23 Si 0.94 20.27 29.55 -169.99 -5.02 15.25 16 24 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 25 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 26 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 27 C -0.22 -4.77 9.16 -39.42 -0.36 -5.13 16 28 C -0.06 -1.17 8.64 -39.41 -0.34 -1.51 16 29 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.43 4.86 6.07 -40.82 -0.25 4.61 16 33 H 0.17 1.79 5.66 -52.48 -0.30 1.49 16 34 H 0.14 0.67 8.06 -52.48 -0.42 0.24 16 35 H 0.16 0.82 8.06 -52.49 -0.42 0.40 16 36 H 0.41 5.11 8.16 -40.82 -0.33 4.77 16 37 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 38 H 0.12 2.39 8.06 -52.49 -0.42 1.96 16 39 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.13 2.83 5.63 -52.48 -0.30 2.54 16 41 H 0.12 2.13 6.52 -52.49 -0.34 1.78 16 LS Contribution 356.51 15.07 5.37 5.37 Total: -1.00 -33.41 356.51 -6.75 -40.16 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -3.88 Total: 12.45 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -3.92 Total: -6.94 kcal Atomic # 7 Polarization: -46.45 SS G_CDS: 0.56 Total: -45.89 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: 0.14 Total: -20.41 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.41 -6.75 -40.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361726044.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.898 kcal (2) G-P(sol) polarization free energy of solvation -33.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds