Wall clock time and date at job start Tue Mar 31 2020 23:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21272 * 120.00716 * 2 1 4 4 N 1.34786 * 119.99657 * 179.97438 * 2 1 3 5 5 C 1.39312 * 119.99537 * 185.35123 * 4 2 1 6 6 C 1.39070 * 120.59603 * 34.70049 * 5 4 2 7 7 N 1.31616 * 120.77212 * 180.26246 * 6 5 4 8 8 C 1.31922 * 122.16571 * 359.74353 * 7 6 5 9 9 C 1.37965 * 121.10824 * 359.97045 * 8 7 6 10 10 C 1.39946 * 119.08193 * 0.02593 * 9 8 7 11 11 C 1.47787 * 120.96934 * 179.97438 * 10 9 8 12 12 O 1.21567 * 120.00106 * 185.20396 * 11 10 9 13 13 N 1.34773 * 120.00269 * 5.21521 * 11 10 9 14 14 C 1.39840 * 120.00410 * 174.13193 * 13 11 10 15 15 C 1.38990 * 120.03581 * 333.93686 * 14 13 11 16 16 C 1.38144 * 120.06423 * 180.02562 * 15 14 13 17 17 C 1.38183 * 120.14255 * 359.71621 * 16 15 14 18 18 C 1.38912 * 120.06846 * 0.55510 * 17 16 15 19 19 O 1.35759 * 120.02738 * 179.71650 * 18 17 16 20 20 C 1.34826 * 116.99438 * 174.47695 * 19 18 17 21 21 H 1.07999 * 120.00510 * 5.02694 * 20 19 18 22 22 C 1.38658 * 119.99367 * 185.03082 * 20 19 18 23 23 N 1.31549 * 120.00247 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99680 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47534 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47290 * 119.99943 * 24 22 20 27 27 H 1.48502 * 109.46980 * 239.99768 * 24 22 20 28 28 C 1.38738 * 120.03988 * 153.95229 * 14 13 11 29 29 H 1.09000 * 109.47226 * 270.00212 * 1 2 3 30 30 H 1.09002 * 109.46683 * 30.00099 * 1 2 3 31 31 H 1.08993 * 109.47472 * 150.00026 * 1 2 3 32 32 H 0.96995 * 120.00236 * 5.34895 * 4 2 1 33 33 H 1.07997 * 119.61444 * 0.02562 * 6 5 4 34 34 H 1.08006 * 119.44431 * 180.02562 * 8 7 6 35 35 H 1.08003 * 120.45971 * 180.02562 * 9 8 7 36 36 H 0.97000 * 119.99920 * 354.12759 * 13 11 10 37 37 H 1.07994 * 119.96603 * 359.97438 * 15 14 13 38 38 H 1.07997 * 119.93171 * 180.02562 * 16 15 14 39 39 H 1.07996 * 119.96369 * 180.29546 * 17 16 15 40 40 H 0.97007 * 120.00251 * 180.02562 * 23 22 20 41 41 H 1.07997 * 120.06812 * 0.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.5694 -1.1699 0.1130 6 6 4.2180 -0.2195 0.8942 7 7 5.5299 -0.2156 0.9988 8 6 6.2864 -1.1027 0.3815 9 6 5.7301 -2.0861 -0.4102 10 6 4.3391 -2.1362 -0.5560 11 6 3.6991 -3.1714 -1.3943 12 8 2.4989 -3.1424 -1.5854 13 7 4.4460 -4.1478 -1.9469 14 6 3.8279 -5.1952 -2.6371 15 6 2.5221 -5.5571 -2.3280 16 6 1.9111 -6.5921 -3.0092 17 6 2.5936 -7.2668 -4.0034 18 6 3.9008 -6.9136 -4.3131 19 8 4.5725 -7.5808 -5.2861 20 6 5.7941 -7.1153 -5.6159 21 1 6.2300 -6.2997 -5.0581 22 6 6.4908 -7.6837 -6.6714 23 7 5.9600 -8.6775 -7.3507 24 14 8.1836 -7.0394 -7.1280 25 1 8.5523 -5.9267 -6.2163 26 1 9.1800 -8.1333 -7.0027 27 1 8.1642 -6.5455 -8.5283 28 6 4.5176 -5.8745 -3.6309 29 1 -0.3634 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3634 -0.8899 -0.5138 32 1 1.6990 -2.0055 -0.0774 33 1 3.6386 0.5263 1.4180 34 1 7.3592 -1.0588 0.4985 35 1 6.3593 -2.8073 -0.9105 36 1 5.4123 -4.1239 -1.8658 37 1 1.9848 -5.0293 -1.5541 38 1 0.8962 -6.8713 -2.7676 39 1 2.1115 -8.0723 -4.5373 40 1 6.4476 -9.0754 -8.0889 41 1 5.5326 -5.5956 -3.8725 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361808436.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:50:38 Heat of formation + Delta-G solvation = -18.969091 kcal Electronic energy + Delta-G solvation = -28218.343973 eV Core-core repulsion = 24064.775972 eV Total energy + Delta-G solvation = -4153.568000 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.56281 -40.18358 -39.37601 -38.67835 -36.63250 -35.42826 -34.56406 -32.78004 -32.27943 -31.38633 -29.56355 -29.15759 -28.60192 -25.55081 -25.09790 -23.99322 -22.30708 -21.95804 -21.08091 -20.40516 -18.73889 -18.17480 -17.81139 -17.60119 -17.23398 -16.56011 -15.77812 -15.63640 -15.47793 -15.22971 -15.03313 -14.82294 -14.33354 -14.28997 -14.03508 -13.94538 -13.85179 -13.63523 -13.10514 -13.08333 -12.67049 -12.62035 -12.45556 -11.94738 -11.72432 -11.37718 -11.26766 -11.12940 -10.88806 -10.50888 -10.43704 -10.37041 -10.05747 -9.97892 -9.66942 -9.50096 -8.89609 -8.67785 -7.85293 -7.27056 -6.52752 -4.12967 0.27104 0.66422 1.87946 2.19954 2.26235 2.66028 2.77506 2.86824 3.06211 3.07863 3.12852 3.51677 3.88887 4.16058 4.21263 4.30708 4.32007 4.49918 4.55670 4.79680 4.91397 5.00410 5.00597 5.18434 5.20579 5.37180 5.48844 5.50081 5.59579 5.81561 5.86793 5.90026 6.07836 6.13111 6.32947 6.47680 6.76539 6.82547 6.99787 7.01340 7.19007 7.32017 7.46618 7.53807 7.65013 7.72265 7.90268 7.96384 8.92513 9.61360 10.65090 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014019 B = 0.002700 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.751197 B =10367.261661 C =11775.806846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.514 3.486 3 O -0.529 6.529 4 N -0.656 5.656 5 C 0.158 3.842 6 C 0.098 3.902 7 N -0.448 5.448 8 C 0.074 3.926 9 C -0.119 4.119 10 C -0.123 4.123 11 C 0.562 3.438 12 O -0.516 6.516 13 N -0.652 5.652 14 C 0.177 3.823 15 C -0.212 4.212 16 C -0.062 4.062 17 C -0.199 4.199 18 C 0.170 3.830 19 O -0.174 6.174 20 C -0.394 4.394 21 H 0.091 0.909 22 C 0.040 3.960 23 N -0.860 5.860 24 Si 0.941 3.059 25 H -0.267 1.267 26 H -0.275 1.275 27 H -0.275 1.275 28 C -0.258 4.258 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.426 0.574 33 H 0.171 0.829 34 H 0.166 0.834 35 H 0.145 0.855 36 H 0.408 0.592 37 H 0.127 0.873 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.270 0.730 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.764 12.556 16.191 21.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.303 3.697 3 O -0.405 6.405 4 N -0.306 5.306 5 C 0.058 3.942 6 C -0.063 4.063 7 N -0.157 5.157 8 C -0.081 4.081 9 C -0.140 4.140 10 C -0.137 4.137 11 C 0.350 3.650 12 O -0.393 6.393 13 N -0.295 5.295 14 C 0.084 3.916 15 C -0.233 4.233 16 C -0.081 4.081 17 C -0.219 4.219 18 C 0.115 3.885 19 O -0.077 6.077 20 C -0.470 4.470 21 H 0.109 0.891 22 C -0.164 4.164 23 N -0.495 5.495 24 Si 0.766 3.234 25 H -0.192 1.192 26 H -0.201 1.201 27 H -0.201 1.201 28 C -0.280 4.280 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.107 0.893 32 H 0.269 0.731 33 H 0.188 0.812 34 H 0.183 0.817 35 H 0.162 0.838 36 H 0.244 0.756 37 H 0.145 0.855 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.080 0.920 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.859 13.614 16.248 21.747 hybrid contribution 0.911 -0.768 -0.940 1.518 sum -3.948 12.846 15.308 20.370 Atomic orbital electron populations 1.21881 0.90057 1.05817 1.05252 1.21155 0.91299 0.82751 0.74491 1.90749 1.70627 1.31250 1.47887 1.43812 1.04237 1.11514 1.71006 1.18811 0.84693 0.95980 0.94703 1.22946 0.90373 0.97493 0.95529 1.67580 1.05821 1.22852 1.19399 1.22707 1.00685 0.90626 0.94111 1.22279 0.93266 0.99759 0.98648 1.20197 0.94137 0.99096 1.00265 1.17971 0.86700 0.80758 0.79563 1.90643 1.14269 1.74375 1.60019 1.43290 1.10609 1.22737 1.52885 1.17421 0.93391 0.88023 0.92718 1.20685 0.94936 1.01958 1.05705 1.20550 0.98488 0.94432 0.94608 1.20295 0.93307 1.05075 1.03200 1.19042 0.91071 0.89637 0.88702 1.84013 1.29712 1.47961 1.46040 1.21322 0.90946 1.18812 1.15933 0.89147 1.25289 0.99922 0.96067 0.95148 1.70039 1.37900 1.22089 1.19443 0.85655 0.80213 0.78693 0.78885 1.19170 1.20079 1.20090 1.20754 1.02574 1.03457 1.01181 0.88208 0.88285 0.89343 0.73149 0.81229 0.81707 0.83751 0.75556 0.85490 0.86514 0.86296 0.91963 0.85169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.02 10.31 36.00 0.37 -0.65 16 2 C 0.51 5.27 7.67 -10.98 -0.08 5.18 16 3 O -0.53 -7.23 14.90 5.56 0.08 -7.14 16 4 N -0.66 -6.85 4.64 -9.57 -0.04 -6.90 16 5 C 0.16 1.85 6.28 -83.30 -0.52 1.33 16 6 C 0.10 1.15 9.83 -17.34 -0.17 0.98 16 7 N -0.45 -5.13 10.32 -13.14 -0.14 -5.26 16 8 C 0.07 0.68 11.16 -17.61 -0.20 0.48 16 9 C -0.12 -1.08 9.61 -39.04 -0.38 -1.45 16 10 C -0.12 -1.41 5.92 -104.50 -0.62 -2.03 16 11 C 0.56 7.61 7.56 -12.36 -0.09 7.51 16 12 O -0.52 -7.84 11.38 5.31 0.06 -7.78 16 13 N -0.65 -9.00 5.32 -10.75 -0.06 -9.05 16 14 C 0.18 3.14 6.40 -83.74 -0.54 2.60 16 15 C -0.21 -3.71 8.70 -39.34 -0.34 -4.05 16 16 C -0.06 -1.08 10.03 -39.64 -0.40 -1.48 16 17 C -0.20 -4.05 9.99 -39.35 -0.39 -4.44 16 18 C 0.17 3.93 6.65 -39.14 -0.26 3.67 16 19 O -0.17 -4.78 9.76 0.03 0.00 -4.78 16 20 C -0.39 -10.56 9.49 30.89 0.29 -10.27 16 21 H 0.09 2.22 5.20 -52.49 -0.27 1.94 16 22 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 23 N -0.86 -24.57 13.67 55.48 0.76 -23.81 16 24 Si 0.94 19.79 29.55 -169.99 -5.02 14.76 16 25 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 26 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 27 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 28 C -0.26 -5.26 9.06 -39.20 -0.36 -5.61 16 29 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.43 4.12 6.65 -40.82 -0.27 3.85 16 33 H 0.17 1.95 6.53 -52.49 -0.34 1.61 16 34 H 0.17 0.99 8.06 -52.48 -0.42 0.57 16 35 H 0.14 0.91 6.55 -52.48 -0.34 0.57 16 36 H 0.41 4.40 6.94 -40.82 -0.28 4.12 16 37 H 0.13 2.08 5.88 -52.49 -0.31 1.77 16 38 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 39 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 40 H 0.27 7.06 8.31 -40.82 -0.34 6.73 16 41 H 0.13 2.59 5.63 -52.49 -0.30 2.30 16 LS Contribution 355.31 15.07 5.35 5.35 Total: -1.00 -34.10 355.31 -6.57 -40.67 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -3.79 Total: 11.20 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: -3.78 Total: -7.25 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: 0.52 Total: -45.03 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: 0.14 Total: -19.71 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.10 -6.57 -40.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361808436.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.701 kcal (2) G-P(sol) polarization free energy of solvation -34.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds