Wall clock time and date at job start Tue Mar 31 2020 23:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21272 * 120.00716 * 2 1 4 4 N 1.34786 * 119.99657 * 179.97438 * 2 1 3 5 5 C 1.39312 * 119.99537 * 185.35123 * 4 2 1 6 6 C 1.39070 * 120.59603 * 34.70049 * 5 4 2 7 7 N 1.31616 * 120.77212 * 180.26246 * 6 5 4 8 8 C 1.31922 * 122.16571 * 359.74353 * 7 6 5 9 9 C 1.37965 * 121.10824 * 359.97045 * 8 7 6 10 10 C 1.39946 * 119.08193 * 0.02593 * 9 8 7 11 11 C 1.47787 * 120.96934 * 179.97438 * 10 9 8 12 12 O 1.21567 * 120.00106 * 185.20396 * 11 10 9 13 13 N 1.34773 * 120.00269 * 5.21521 * 11 10 9 14 14 C 1.39840 * 120.00410 * 174.13193 * 13 11 10 15 15 C 1.38990 * 120.03581 * 333.93686 * 14 13 11 16 16 C 1.38144 * 120.06423 * 180.02562 * 15 14 13 17 17 C 1.38183 * 120.14255 * 359.71621 * 16 15 14 18 18 C 1.38912 * 120.06846 * 0.55510 * 17 16 15 19 19 O 1.35759 * 120.02738 * 179.71650 * 18 17 16 20 20 C 1.34826 * 116.99438 * 174.47695 * 19 18 17 21 21 H 1.07999 * 120.00510 * 5.02694 * 20 19 18 22 22 C 1.38658 * 119.99367 * 185.03082 * 20 19 18 23 23 N 1.31549 * 120.00247 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99680 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47534 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47290 * 119.99943 * 24 22 20 27 27 H 1.48502 * 109.46980 * 239.99768 * 24 22 20 28 28 C 1.38738 * 120.03988 * 153.95229 * 14 13 11 29 29 H 1.09000 * 109.47226 * 270.00212 * 1 2 3 30 30 H 1.09002 * 109.46683 * 30.00099 * 1 2 3 31 31 H 1.08993 * 109.47472 * 150.00026 * 1 2 3 32 32 H 0.96995 * 120.00236 * 5.34895 * 4 2 1 33 33 H 1.07997 * 119.61444 * 0.02562 * 6 5 4 34 34 H 1.08006 * 119.44431 * 180.02562 * 8 7 6 35 35 H 1.08003 * 120.45971 * 180.02562 * 9 8 7 36 36 H 0.97000 * 119.99920 * 354.12759 * 13 11 10 37 37 H 1.07994 * 119.96603 * 359.97438 * 15 14 13 38 38 H 1.07997 * 119.93171 * 180.02562 * 16 15 14 39 39 H 1.07996 * 119.96369 * 180.29546 * 17 16 15 40 40 H 0.97007 * 120.00251 * 180.02562 * 23 22 20 41 41 H 1.07997 * 120.06812 * 0.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.5694 -1.1699 0.1130 6 6 4.2180 -0.2195 0.8942 7 7 5.5299 -0.2156 0.9988 8 6 6.2864 -1.1027 0.3815 9 6 5.7301 -2.0861 -0.4102 10 6 4.3391 -2.1362 -0.5560 11 6 3.6991 -3.1714 -1.3943 12 8 2.4989 -3.1424 -1.5854 13 7 4.4460 -4.1478 -1.9469 14 6 3.8279 -5.1952 -2.6371 15 6 2.5221 -5.5571 -2.3280 16 6 1.9111 -6.5921 -3.0092 17 6 2.5936 -7.2668 -4.0034 18 6 3.9008 -6.9136 -4.3131 19 8 4.5725 -7.5808 -5.2861 20 6 5.7941 -7.1153 -5.6159 21 1 6.2300 -6.2997 -5.0581 22 6 6.4908 -7.6837 -6.6714 23 7 5.9600 -8.6775 -7.3507 24 14 8.1836 -7.0394 -7.1280 25 1 8.5523 -5.9267 -6.2163 26 1 9.1800 -8.1333 -7.0027 27 1 8.1642 -6.5455 -8.5283 28 6 4.5176 -5.8745 -3.6309 29 1 -0.3634 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3634 -0.8899 -0.5138 32 1 1.6990 -2.0055 -0.0774 33 1 3.6386 0.5263 1.4180 34 1 7.3592 -1.0588 0.4985 35 1 6.3593 -2.8073 -0.9105 36 1 5.4123 -4.1239 -1.8658 37 1 1.9848 -5.0293 -1.5541 38 1 0.8962 -6.8713 -2.7676 39 1 2.1115 -8.0723 -4.5373 40 1 6.4476 -9.0754 -8.0889 41 1 5.5326 -5.5956 -3.8725 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361808436.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:50:37 Heat of formation + Delta-G solvation = -43.098127 kcal Electronic energy + Delta-G solvation = -28219.390286 eV Core-core repulsion = 24064.775972 eV Total energy + Delta-G solvation = -4154.614314 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.48687 -41.35475 -40.42663 -40.03151 -38.16288 -36.39710 -35.76231 -34.27330 -33.63204 -32.08872 -30.99985 -30.27731 -29.73208 -27.35892 -26.16567 -24.84351 -23.63008 -23.38401 -22.00529 -21.59049 -20.07199 -19.60380 -18.85423 -18.69774 -18.32097 -17.55356 -17.00825 -16.90864 -16.68301 -16.40784 -16.10061 -15.86230 -15.79071 -15.55056 -15.50433 -15.00506 -14.86031 -14.77440 -14.55649 -14.16181 -13.68729 -13.58360 -13.34364 -13.26732 -13.16075 -12.86538 -12.71686 -12.45410 -12.12712 -12.08639 -11.62055 -11.38043 -11.25008 -11.20218 -10.89942 -10.76321 -10.57209 -9.50801 -9.35537 -8.87538 -8.46324 -6.15030 -0.62837 -0.11783 0.44172 0.70334 1.36957 1.43401 1.44815 1.54618 1.64346 1.72737 1.94707 2.17824 2.67683 2.84970 3.15919 3.25242 3.39847 3.50883 3.55071 3.60492 3.81776 4.05926 4.12576 4.32863 4.39322 4.43072 4.49460 4.58595 4.61607 4.62881 4.65589 4.76082 5.02479 5.02896 5.11592 5.12294 5.32266 5.38664 5.54410 5.64701 5.68451 6.02003 6.14188 6.20677 6.29973 6.74807 6.80447 6.96466 6.98475 7.78088 8.76860 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014019 B = 0.002700 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.751197 B =10367.261661 C =11775.806846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.508 3.492 3 O -0.569 6.569 4 N -0.654 5.654 5 C 0.146 3.854 6 C 0.086 3.914 7 N -0.464 5.464 8 C 0.076 3.924 9 C -0.106 4.106 10 C -0.134 4.134 11 C 0.566 3.434 12 O -0.533 6.533 13 N -0.645 5.645 14 C 0.186 3.814 15 C -0.203 4.203 16 C -0.049 4.049 17 C -0.215 4.215 18 C 0.135 3.865 19 O -0.227 6.227 20 C -0.412 4.412 21 H 0.106 0.894 22 C -0.022 4.022 23 N -0.920 5.920 24 Si 1.017 2.983 25 H -0.246 1.246 26 H -0.269 1.269 27 H -0.273 1.273 28 C -0.261 4.261 29 H 0.124 0.876 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.430 0.570 33 H 0.164 0.836 34 H 0.200 0.800 35 H 0.176 0.824 36 H 0.423 0.577 37 H 0.147 0.853 38 H 0.156 0.844 39 H 0.117 0.883 40 H 0.272 0.728 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.340 14.130 18.044 23.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.300 3.700 3 O -0.448 6.448 4 N -0.303 5.303 5 C 0.046 3.954 6 C -0.075 4.075 7 N -0.173 5.173 8 C -0.080 4.080 9 C -0.126 4.126 10 C -0.148 4.148 11 C 0.355 3.645 12 O -0.411 6.411 13 N -0.290 5.290 14 C 0.091 3.909 15 C -0.223 4.223 16 C -0.068 4.068 17 C -0.235 4.235 18 C 0.084 3.916 19 O -0.133 6.133 20 C -0.488 4.488 21 H 0.123 0.877 22 C -0.220 4.220 23 N -0.558 5.558 24 Si 0.836 3.164 25 H -0.169 1.169 26 H -0.195 1.195 27 H -0.199 1.199 28 C -0.283 4.283 29 H 0.142 0.858 30 H 0.120 0.880 31 H 0.120 0.880 32 H 0.273 0.727 33 H 0.181 0.819 34 H 0.217 0.783 35 H 0.193 0.807 36 H 0.263 0.737 37 H 0.164 0.836 38 H 0.174 0.826 39 H 0.135 0.865 40 H 0.081 0.919 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.464 15.219 18.166 24.116 hybrid contribution 0.599 -1.123 -1.260 1.791 sum -3.865 14.095 16.907 22.349 Atomic orbital electron populations 1.21941 0.86674 1.06573 1.07043 1.21956 0.92876 0.81997 0.73199 1.90729 1.71726 1.32505 1.49836 1.43881 1.03951 1.11797 1.70680 1.18946 0.85393 0.96133 0.94928 1.22874 0.90712 0.97743 0.96141 1.67587 1.05838 1.23818 1.20077 1.23303 1.02075 0.89624 0.92990 1.22640 0.92462 0.99854 0.97690 1.20077 0.95173 0.98757 1.00751 1.18228 0.86486 0.80641 0.79097 1.90625 1.15141 1.74803 1.60517 1.43190 1.11534 1.21878 1.52372 1.17427 0.93429 0.88230 0.91783 1.21084 0.94784 1.01198 1.05239 1.20961 0.99858 0.93219 0.92749 1.20533 0.92802 1.05791 1.04386 1.19579 0.92229 0.90970 0.88825 1.83985 1.30603 1.50235 1.48501 1.21855 0.91269 1.19243 1.16388 0.87714 1.26572 1.04395 0.96202 0.94841 1.70187 1.40266 1.24516 1.20874 0.84551 0.74486 0.78645 0.78699 1.16906 1.19455 1.19876 1.20780 1.02779 1.03109 1.01634 0.85781 0.88018 0.87989 0.72727 0.81910 0.78298 0.80691 0.73748 0.83566 0.82647 0.86496 0.91882 0.85141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 10.31 71.23 0.73 -0.89 16 2 C 0.51 9.94 7.67 87.65 0.67 10.61 16 3 O -0.57 -15.49 14.90 -3.00 -0.04 -15.54 16 4 N -0.65 -12.80 4.64 -302.59 -1.40 -14.21 16 5 C 0.15 3.22 6.28 38.70 0.24 3.47 16 6 C 0.09 1.95 9.83 84.93 0.83 2.78 16 7 N -0.46 -9.84 10.32 -195.48 -2.02 -11.85 16 8 C 0.08 1.15 11.16 84.61 0.94 2.09 16 9 C -0.11 -1.56 9.61 22.62 0.22 -1.34 16 10 C -0.13 -2.74 5.92 -19.79 -0.12 -2.86 16 11 C 0.57 13.77 7.56 86.77 0.66 14.42 16 12 O -0.53 -14.78 11.38 -3.93 -0.04 -14.83 16 13 N -0.65 -15.91 5.32 -306.19 -1.63 -17.54 16 14 C 0.19 6.15 6.40 38.16 0.24 6.40 16 15 C -0.20 -6.49 8.70 22.43 0.20 -6.29 16 16 C -0.05 -1.61 10.03 22.23 0.22 -1.38 16 17 C -0.22 -8.77 9.99 22.42 0.22 -8.55 16 18 C 0.14 6.39 6.65 22.56 0.15 6.54 16 19 O -0.23 -13.07 9.76 -22.79 -0.22 -13.29 16 20 C -0.41 -22.75 9.49 67.92 0.64 -22.11 16 21 H 0.11 5.19 5.20 -2.91 -0.02 5.18 16 22 C -0.02 -1.23 5.49 84.84 0.47 -0.76 16 23 N -0.92 -55.03 13.67 21.61 0.30 -54.73 16 24 Si 1.02 40.88 29.55 68.60 2.03 42.91 16 25 H -0.25 -8.86 7.11 99.48 0.71 -8.16 16 26 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 27 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 28 C -0.26 -10.51 9.06 22.51 0.20 -10.30 16 29 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.43 7.55 6.65 -92.71 -0.62 6.93 16 33 H 0.16 3.80 6.53 -2.91 -0.02 3.78 16 34 H 0.20 1.54 8.06 -2.91 -0.02 1.51 16 35 H 0.18 1.41 6.55 -2.91 -0.02 1.40 16 36 H 0.42 7.70 6.94 -92.71 -0.64 7.06 16 37 H 0.15 4.22 5.88 -2.91 -0.02 4.21 16 38 H 0.16 3.83 8.06 -2.91 -0.02 3.81 16 39 H 0.12 4.69 8.06 -2.91 -0.02 4.67 16 40 H 0.27 14.90 8.31 -92.70 -0.77 14.13 16 41 H 0.13 5.13 5.63 -2.91 -0.02 5.11 16 Total: -1.00 -78.47 355.31 3.37 -75.10 By element: Atomic # 1 Polarization: 32.29 SS G_CDS: -0.13 Total: 32.17 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: 6.54 Total: -8.18 kcal Atomic # 7 Polarization: -93.58 SS G_CDS: -4.75 Total: -98.33 kcal Atomic # 8 Polarization: -43.35 SS G_CDS: -0.31 Total: -43.66 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.91 kcal Total: -78.47 3.37 -75.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361808436.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.000 kcal (2) G-P(sol) polarization free energy of solvation -78.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds