Wall clock time and date at job start Tue Mar 31 2020 23:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46909 * 2 1 4 4 C 1.50693 * 109.47483 * 239.99935 * 2 1 3 5 5 H 1.07996 * 120.00064 * 275.02284 * 4 2 1 6 6 C 1.37879 * 120.00108 * 95.02332 * 4 2 1 7 7 N 1.31521 * 119.99984 * 184.82216 * 6 4 2 8 8 Si 1.86804 * 120.00073 * 4.82936 * 6 4 2 9 9 H 1.48500 * 109.46820 * 84.65516 * 8 6 4 10 10 H 1.48494 * 109.46965 * 204.65581 * 8 6 4 11 11 H 1.48502 * 109.46966 * 324.65693 * 8 6 4 12 12 N 1.46497 * 109.47089 * 119.99694 * 2 1 3 13 13 C 1.46494 * 120.00209 * 60.00301 * 12 2 1 14 14 C 1.34778 * 119.99914 * 240.00491 * 12 2 1 15 15 O 1.21628 * 120.00389 * 4.99457 * 14 12 2 16 16 C 1.47168 * 119.99884 * 184.99728 * 14 12 2 17 17 C 1.38030 * 127.04189 * 98.46897 * 16 14 12 18 18 C 1.39136 * 106.08862 * 179.90292 * 17 16 14 19 19 N 1.31310 * 107.36224 * 0.10456 * 18 17 16 20 20 N 1.28426 * 111.03318 * 359.64394 * 19 18 17 21 21 C 1.46495 * 125.20637 * 180.34110 * 20 19 18 22 22 C 1.50587 * 127.32821 * 180.24762 * 18 17 16 23 23 C 1.52795 * 110.65663 * 340.59534 * 22 18 17 24 24 S 1.81733 * 109.19897 * 53.30787 * 23 22 18 25 25 O 1.42097 * 108.71915 * 47.47489 * 24 23 22 26 26 O 1.42101 * 108.71590 * 178.86237 * 24 23 22 27 27 C 1.50642 * 126.74304 * 359.76752 * 17 16 14 28 28 H 1.08992 * 109.47549 * 294.74151 * 1 2 3 29 29 H 1.09001 * 109.46773 * 174.74129 * 1 2 3 30 30 H 1.09001 * 109.46939 * 54.74517 * 1 2 3 31 31 H 0.96998 * 119.99853 * 179.97438 * 7 6 4 32 32 H 1.08996 * 109.47416 * 95.44994 * 13 12 2 33 33 H 1.08996 * 109.47884 * 215.45567 * 13 12 2 34 34 H 1.09003 * 109.46794 * 335.45247 * 13 12 2 35 35 H 1.08998 * 109.47040 * 275.11698 * 21 20 19 36 36 H 1.09002 * 109.46971 * 35.11046 * 21 20 19 37 37 H 1.08991 * 109.47256 * 155.11263 * 21 20 19 38 38 H 1.08997 * 109.24081 * 100.90369 * 22 18 17 39 39 H 1.09000 * 109.23888 * 220.29222 * 22 18 17 40 40 H 1.08995 * 109.51647 * 173.21934 * 23 22 18 41 41 H 1.09003 * 109.52241 * 293.39361 * 23 22 18 42 42 H 1.08996 * 109.68372 * 281.83828 * 27 17 16 43 43 H 1.09001 * 109.68013 * 42.39024 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1352 -1.7854 -1.2291 6 6 2.3608 0.0122 -2.3578 7 7 2.7084 -0.6131 -3.4615 8 14 2.3123 1.8791 -2.3177 9 1 3.5952 2.3961 -1.7773 10 1 2.1098 2.3987 -3.6940 11 1 1.1934 2.3267 -1.4500 12 7 2.0183 -0.6905 1.1962 13 6 1.6645 -2.0931 1.4281 14 6 2.7931 -0.0354 2.0834 15 8 3.0122 1.1522 1.9390 16 6 3.3740 -0.7572 3.2268 17 6 4.6544 -1.2630 3.3272 18 6 4.7380 -1.8540 4.5840 19 7 3.5727 -1.6980 5.1687 20 7 2.7578 -1.0588 4.4093 21 6 1.3781 -0.7089 4.7559 22 6 5.9297 -2.5474 5.1895 23 6 6.9218 -2.9613 4.1036 24 16 7.3349 -1.5121 3.0878 25 8 7.6395 -0.4235 3.9488 26 8 8.2775 -1.9025 2.0986 27 6 5.7368 -1.1896 2.2821 28 1 -0.3634 0.4301 0.9332 29 1 -0.3633 -1.0234 -0.0942 30 1 -0.3633 0.5932 -0.8392 31 1 2.9390 -0.1048 -4.2547 32 1 2.4632 -2.7354 1.0573 33 1 1.5289 -2.2618 2.4963 34 1 0.7379 -2.3256 0.9031 35 1 0.7218 -1.5483 4.5260 36 1 1.3174 -0.4812 5.8201 37 1 1.0686 0.1628 4.1795 38 1 6.4227 -1.8706 5.8874 39 1 5.5944 -3.4345 5.7268 40 1 7.8278 -3.3510 4.5675 41 1 6.4736 -3.7307 3.4750 42 1 5.5556 -1.9400 1.5126 43 1 5.7462 -0.1968 1.8324 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361995253.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:38 Heat of formation + Delta-G solvation = -13.167858 kcal Electronic energy + Delta-G solvation = -29137.680575 eV Core-core repulsion = 25119.808086 eV Total energy + Delta-G solvation = -4017.872489 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.80751 -39.18483 -37.14253 -36.07574 -35.74651 -35.67306 -33.03223 -32.64028 -31.99617 -30.50676 -28.52633 -26.81811 -26.51517 -25.40674 -23.96185 -23.28527 -20.68425 -20.48879 -18.80738 -18.59088 -17.68839 -16.98788 -16.81277 -16.45939 -16.39644 -15.94757 -15.73885 -15.17369 -14.77712 -14.64337 -14.28061 -13.86577 -13.60681 -13.54162 -13.22065 -13.01080 -12.81193 -12.74766 -12.66141 -12.52005 -12.46687 -12.14923 -12.08692 -11.97747 -11.94850 -11.62928 -11.20495 -11.13476 -10.98869 -10.82892 -10.63147 -10.33948 -9.93442 -9.69021 -9.43084 -9.05482 -8.87099 -8.73296 -7.99236 -6.29573 -4.33624 -0.08510 1.57328 2.09694 2.29297 2.55083 2.89932 3.21522 3.29425 3.35755 3.49553 3.56327 3.76503 4.16013 4.26472 4.34256 4.45843 4.57159 4.74391 4.79318 4.86736 5.02980 5.03967 5.09585 5.14961 5.20586 5.43353 5.46551 5.51898 5.62421 5.72323 5.79276 6.02163 6.13131 6.19583 6.27537 6.38007 6.55079 6.71585 6.85855 7.19582 7.42539 7.82205 7.85912 8.27294 8.49752 8.71830 9.31331 10.81839 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012258 B = 0.004607 C = 0.003755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.725048 B = 6076.520253 C = 7453.983070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.221 3.779 3 H 0.067 0.933 4 C -0.530 4.530 5 H 0.080 0.920 6 C 0.083 3.917 7 N -0.885 5.885 8 Si 0.871 3.129 9 H -0.269 1.269 10 H -0.285 1.285 11 H -0.263 1.263 12 N -0.570 5.570 13 C 0.086 3.914 14 C 0.573 3.427 15 O -0.532 6.532 16 C 0.022 3.978 17 C -0.156 4.156 18 C 0.019 3.981 19 N -0.273 5.273 20 N -0.270 5.270 21 C 0.086 3.914 22 C -0.016 4.016 23 C -0.601 4.601 24 S 2.424 3.576 25 O -0.929 6.929 26 O -0.936 6.936 27 C -0.525 4.525 28 H 0.027 0.973 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.269 0.731 32 H 0.057 0.943 33 H 0.045 0.955 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.142 0.858 41 H 0.139 0.861 42 H 0.148 0.852 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.495 -6.497 17.147 18.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.122 3.878 3 H 0.084 0.916 4 C -0.568 4.568 5 H 0.098 0.902 6 C -0.122 4.122 7 N -0.521 5.521 8 Si 0.697 3.303 9 H -0.194 1.194 10 H -0.211 1.211 11 H -0.188 1.188 12 N -0.301 5.301 13 C -0.058 4.058 14 C 0.356 3.644 15 O -0.408 6.408 16 C -0.108 4.108 17 C -0.167 4.167 18 C -0.139 4.139 19 N -0.104 5.104 20 N -0.057 5.057 21 C -0.054 4.054 22 C -0.055 4.055 23 C -0.730 4.730 24 S 2.605 3.395 25 O -0.926 6.926 26 O -0.933 6.933 27 C -0.654 4.654 28 H 0.046 0.954 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.100 0.900 35 H 0.108 0.892 36 H 0.119 0.881 37 H 0.115 0.885 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.161 0.839 41 H 0.157 0.843 42 H 0.166 0.834 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.688 -5.574 17.758 18.625 hybrid contribution -0.480 0.552 -0.945 1.195 sum 0.208 -5.022 16.813 17.548 Atomic orbital electron populations 1.22224 0.97846 1.01088 0.99385 1.19475 0.91140 0.94942 0.82290 0.91560 1.21055 1.45382 0.95764 0.94585 0.90213 1.24951 0.93559 0.98503 0.95201 1.69872 1.44253 1.36224 1.01732 0.86953 0.80017 0.85990 0.77321 1.19446 1.21098 1.18786 1.48473 1.47145 1.11938 1.22530 1.21609 1.02081 0.82807 0.99260 1.17076 0.79647 0.86153 0.81526 1.90819 1.60055 1.14281 1.75677 1.21596 0.93981 1.04934 0.90314 1.18966 0.94254 1.07780 0.95705 1.21604 0.95002 1.04450 0.92852 1.73112 1.00804 1.14791 1.21683 1.45514 1.11770 1.38869 1.09584 1.22249 0.76043 1.02863 1.04223 1.19293 0.89084 1.01250 0.95874 1.30080 1.09079 1.20878 1.13006 1.07883 0.77119 0.77628 0.76821 1.93591 1.82363 1.50377 1.66266 1.93616 1.57118 1.83496 1.59120 1.28700 1.15544 1.13431 1.07699 0.95427 0.92937 0.92189 0.92138 0.92436 0.93596 0.89991 0.89236 0.88146 0.88503 0.88050 0.87989 0.83941 0.84302 0.83418 0.83513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 9.06 37.16 0.34 -2.46 16 2 C 0.22 4.94 2.29 -69.09 -0.16 4.78 16 3 H 0.07 1.64 4.07 -51.93 -0.21 1.43 16 4 C -0.53 -13.66 8.82 -34.44 -0.30 -13.97 16 5 H 0.08 2.18 7.67 -52.49 -0.40 1.78 16 6 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 7 N -0.88 -25.48 13.96 55.43 0.77 -24.71 16 8 Si 0.87 21.17 26.98 -169.99 -4.59 16.58 16 9 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.26 -6.12 6.83 56.52 0.39 -5.74 16 12 N -0.57 -10.96 2.75 -176.64 -0.49 -11.45 16 13 C 0.09 1.32 9.16 59.84 0.55 1.87 16 14 C 0.57 11.24 6.68 -12.63 -0.08 11.15 16 15 O -0.53 -12.37 16.45 5.25 0.09 -12.28 16 16 C 0.02 0.36 5.12 -82.14 -0.42 -0.06 16 17 C -0.16 -2.35 5.96 -104.39 -0.62 -2.97 16 18 C 0.02 0.25 6.91 -82.54 -0.57 -0.32 16 19 N -0.27 -3.69 11.91 33.57 0.40 -3.29 16 20 N -0.27 -3.69 3.45 -63.96 -0.22 -3.91 16 21 C 0.09 0.82 10.71 59.84 0.64 1.46 16 22 C -0.02 -0.14 5.87 -28.04 -0.16 -0.31 16 23 C -0.60 -4.68 6.33 37.05 0.23 -4.45 16 24 S 2.42 29.36 5.34 -107.50 -0.57 28.78 16 25 O -0.93 -14.16 17.83 -57.81 -1.03 -15.19 16 26 O -0.94 -14.00 18.11 -57.81 -1.05 -15.04 16 27 C -0.52 -7.29 6.51 35.98 0.23 -7.06 16 28 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.92 6.88 -51.93 -0.36 0.56 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.05 0.58 6.15 -51.93 -0.32 0.26 16 34 H 0.08 1.20 6.54 -51.93 -0.34 0.86 16 35 H 0.09 0.66 7.86 -51.93 -0.41 0.25 16 36 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.10 0.97 7.66 -51.93 -0.40 0.57 16 38 H 0.10 0.86 8.12 -51.93 -0.42 0.44 16 39 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.14 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.14 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.15 1.81 8.14 -51.93 -0.42 1.39 16 43 H 0.15 2.24 8.14 -51.93 -0.42 1.82 16 LS Contribution 363.23 15.07 5.47 5.47 Total: -1.00 -37.32 363.23 -7.45 -44.77 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -5.81 Total: 0.43 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: -0.43 Total: -10.16 kcal Atomic # 7 Polarization: -43.82 SS G_CDS: 0.47 Total: -43.36 kcal Atomic # 8 Polarization: -40.53 SS G_CDS: -1.99 Total: -42.52 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.59 Total: 16.58 kcal Atomic # 16 Polarization: 29.36 SS G_CDS: -0.57 Total: 28.78 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -37.32 -7.45 -44.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361995253.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.602 kcal (2) G-P(sol) polarization free energy of solvation -37.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds