Wall clock time and date at job start Tue Mar 31 2020 23:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47246 * 2 1 4 4 C 1.50696 * 109.47217 * 120.00590 * 2 1 3 5 5 H 1.07997 * 120.00258 * 119.99329 * 4 2 1 6 6 C 1.37879 * 119.99909 * 300.00047 * 4 2 1 7 7 N 1.31515 * 119.99829 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99940 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47052 * 59.99659 * 8 6 4 10 10 H 1.48498 * 109.46726 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.46841 * 299.99257 * 8 6 4 12 12 N 1.46502 * 109.46769 * 240.00507 * 2 1 3 13 13 C 1.46499 * 119.99938 * 299.99877 * 12 2 1 14 14 C 1.34775 * 120.00080 * 120.00582 * 12 2 1 15 15 O 1.21626 * 119.99978 * 5.02593 * 14 12 2 16 16 C 1.47165 * 120.00099 * 185.03314 * 14 12 2 17 17 C 1.38022 * 127.04206 * 92.11508 * 16 14 12 18 18 C 1.39150 * 106.08982 * 179.90231 * 17 16 14 19 19 N 1.31310 * 107.35489 * 0.08886 * 18 17 16 20 20 N 1.28423 * 111.03971 * 359.67156 * 19 18 17 21 21 C 1.46496 * 125.20591 * 180.28762 * 20 19 18 22 22 C 1.50579 * 127.33336 * 180.16299 * 18 17 16 23 23 C 1.52802 * 110.65690 * 340.65371 * 22 18 17 24 24 S 1.81726 * 109.20182 * 53.28765 * 23 22 18 25 25 O 1.42106 * 108.71718 * 47.46154 * 24 23 22 26 26 O 1.42096 * 108.71733 * 178.85516 * 24 23 22 27 27 C 1.50645 * 126.74761 * 359.75800 * 17 16 14 28 28 H 1.08999 * 109.47943 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47174 * 59.99005 * 1 2 3 30 30 H 1.09001 * 109.47127 * 299.99695 * 1 2 3 31 31 H 0.97002 * 119.99970 * 180.02562 * 7 6 4 32 32 H 1.09007 * 109.47160 * 87.67251 * 13 12 2 33 33 H 1.09000 * 109.47471 * 207.67238 * 13 12 2 34 34 H 1.09004 * 109.47154 * 327.67448 * 13 12 2 35 35 H 1.09002 * 109.46822 * 265.06534 * 21 20 19 36 36 H 1.08998 * 109.46988 * 25.07141 * 21 20 19 37 37 H 1.08999 * 109.46929 * 145.07396 * 21 20 19 38 38 H 1.09002 * 109.23826 * 100.95893 * 22 18 17 39 39 H 1.09004 * 109.23897 * 220.34959 * 22 18 17 40 40 H 1.09001 * 109.51555 * 173.20469 * 23 22 18 41 41 H 1.09007 * 109.51803 * 293.36536 * 23 22 18 42 42 H 1.09004 * 109.67549 * 281.88787 * 27 17 16 43 43 H 1.09001 * 109.67630 * 42.43672 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6531 -1.5886 1.1312 6 6 1.6992 -0.2396 2.4827 7 7 0.9435 0.8300 2.6034 8 14 2.3225 -1.1199 4.0078 9 1 3.8075 -1.1193 4.0075 10 1 1.8279 -0.4197 5.2203 11 1 1.8279 -2.5201 4.0080 12 7 2.0182 -0.6905 -1.1963 13 6 1.6643 -2.0931 -1.4282 14 6 2.7931 -0.0355 -2.0834 15 8 3.1627 1.0989 -1.8469 16 6 3.1920 -0.6928 -3.3382 17 6 2.5375 -0.6345 -4.5519 18 6 3.2884 -1.4071 -5.4325 19 7 4.3124 -1.8821 -4.7616 20 7 4.2901 -1.4815 -3.5416 21 6 5.2867 -1.8207 -2.5229 22 6 3.0058 -1.6670 -6.8885 23 6 1.5411 -1.3771 -7.2134 24 16 1.1270 0.3030 -6.6581 25 8 2.1417 1.1932 -7.1023 26 8 -0.2287 0.5714 -6.9889 27 6 1.2655 0.1135 -4.8549 28 1 -0.3635 -1.0276 -0.0005 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3633 0.5138 0.8900 31 1 0.7095 1.1615 3.4844 32 1 0.7161 -2.1448 -1.9635 33 1 2.4433 -2.5711 -2.0220 34 1 1.5699 -2.6070 -0.4715 35 1 4.9421 -2.6817 -1.9501 36 1 6.2333 -2.0614 -3.0068 37 1 5.4261 -0.9715 -1.8540 38 1 3.6426 -1.0258 -7.4980 39 1 3.2245 -2.7103 -7.1163 40 1 1.3847 -1.4539 -8.2894 41 1 0.9046 -2.0977 -6.6998 42 1 0.4108 -0.4483 -4.4781 43 1 1.2963 1.0960 -4.3838 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361995256.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:41 Heat of formation + Delta-G solvation = -14.596015 kcal Electronic energy + Delta-G solvation = -28929.578562 eV Core-core repulsion = 24911.644143 eV Total energy + Delta-G solvation = -4017.934418 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.78426 -39.05059 -37.21749 -36.15220 -35.71470 -35.58086 -33.17080 -32.65938 -31.93130 -29.77248 -28.41138 -26.79835 -26.35957 -25.37230 -23.96944 -23.24515 -20.73750 -20.52058 -18.84453 -18.63924 -17.38764 -16.88468 -16.70195 -16.50146 -16.31093 -15.96028 -15.61777 -15.12769 -14.68867 -14.58464 -14.45450 -13.95289 -13.64301 -13.49949 -13.17826 -13.01104 -12.77315 -12.66639 -12.58886 -12.48781 -12.22778 -12.15202 -11.98733 -11.84782 -11.68464 -11.20947 -11.18033 -11.02367 -10.97139 -10.88387 -10.43487 -10.38416 -10.31028 -9.55636 -9.35040 -9.02354 -8.87287 -8.56802 -7.88626 -6.20920 -4.30341 -0.16249 1.61489 2.14336 2.28677 2.47644 3.01616 3.18257 3.24651 3.24850 3.48462 3.58417 3.71525 4.15485 4.27089 4.30252 4.42774 4.64078 4.74330 4.82043 4.92833 5.01067 5.03471 5.10973 5.15346 5.31166 5.42312 5.47964 5.51247 5.62433 5.68967 5.85843 6.15098 6.25776 6.55199 6.61534 6.67466 6.87601 7.15207 7.30740 7.54546 7.82559 7.89435 7.99875 8.22624 8.54601 8.75141 9.36345 10.84450 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.017752 B = 0.003535 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.893961 B = 7918.101572 C = 8826.047534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.258 3.742 3 H 0.066 0.934 4 C -0.531 4.531 5 H 0.059 0.941 6 C 0.068 3.932 7 N -0.884 5.884 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.573 5.573 13 C 0.084 3.916 14 C 0.571 3.429 15 O -0.527 6.527 16 C 0.026 3.974 17 C -0.166 4.166 18 C 0.018 3.982 19 N -0.273 5.273 20 N -0.267 5.267 21 C 0.084 3.916 22 C -0.016 4.016 23 C -0.600 4.600 24 S 2.426 3.574 25 O -0.927 6.927 26 O -0.939 6.939 27 C -0.523 4.523 28 H 0.032 0.968 29 H 0.013 0.987 30 H 0.096 0.904 31 H 0.266 0.734 32 H 0.049 0.951 33 H 0.047 0.953 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.142 0.858 41 H 0.138 0.862 42 H 0.143 0.857 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.251 -9.154 -15.807 18.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.158 3.842 3 H 0.084 0.916 4 C -0.570 4.570 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.522 5.522 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.304 5.304 13 C -0.060 4.060 14 C 0.353 3.647 15 O -0.403 6.403 16 C -0.104 4.104 17 C -0.177 4.177 18 C -0.140 4.140 19 N -0.105 5.105 20 N -0.053 5.053 21 C -0.055 4.055 22 C -0.055 4.055 23 C -0.729 4.729 24 S 2.607 3.393 25 O -0.924 6.924 26 O -0.936 6.936 27 C -0.652 4.652 28 H 0.051 0.949 29 H 0.032 0.968 30 H 0.115 0.885 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.160 0.840 41 H 0.156 0.844 42 H 0.161 0.839 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.190 -8.374 -15.960 18.303 hybrid contribution -0.229 -0.844 1.643 1.861 sum 2.961 -9.218 -14.316 17.283 Atomic orbital electron populations 1.22106 0.97701 0.99694 1.01132 1.19091 0.91194 0.94545 0.79332 0.91625 1.21184 1.32499 1.13228 0.90083 0.92243 1.24882 0.94779 0.94914 0.98983 1.69856 1.35840 1.22323 1.24150 0.86527 0.79220 0.79559 0.81912 1.20211 1.21051 1.20184 1.48302 1.47769 1.11684 1.22600 1.21628 0.99087 0.82832 1.02443 1.17056 0.80512 0.85876 0.81278 1.90838 1.55421 1.18148 1.75881 1.21664 0.91447 1.00057 0.97272 1.18922 0.98781 1.06753 0.93221 1.21583 0.94545 1.01173 0.96735 1.73129 1.23009 1.22378 0.91969 1.45561 1.18481 1.33641 1.07646 1.22308 0.90627 1.03767 0.88848 1.19288 0.92331 1.05344 0.88544 1.30070 1.05427 1.24739 1.12689 1.07846 0.75152 0.78063 0.78249 1.93602 1.59714 1.60213 1.78873 1.93607 1.34514 1.83533 1.81928 1.28664 1.01435 1.09117 1.25951 0.94932 0.96797 0.88520 0.92403 0.93290 0.93374 0.89476 0.89181 0.87971 0.88221 0.88052 0.88015 0.83958 0.84399 0.83892 0.83710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.31 8.97 37.16 0.33 -2.98 16 2 C 0.26 6.15 2.63 -69.09 -0.18 5.97 16 3 H 0.07 1.83 6.91 -51.93 -0.36 1.47 16 4 C -0.53 -13.36 8.01 -34.44 -0.28 -13.63 16 5 H 0.06 1.45 7.29 -52.49 -0.38 1.06 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.88 -23.80 11.32 55.43 0.63 -23.17 16 8 Si 0.90 19.90 29.54 -169.99 -5.02 14.88 16 9 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 10 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 12 N -0.57 -11.39 2.75 -176.63 -0.49 -11.87 16 13 C 0.08 1.33 9.25 59.85 0.55 1.88 16 14 C 0.57 11.42 6.86 -12.64 -0.09 11.34 16 15 O -0.53 -12.65 16.45 5.25 0.09 -12.56 16 16 C 0.03 0.44 4.89 -82.15 -0.40 0.04 16 17 C -0.17 -2.37 5.96 -104.39 -0.62 -2.99 16 18 C 0.02 0.23 6.91 -82.54 -0.57 -0.34 16 19 N -0.27 -3.78 11.91 33.57 0.40 -3.38 16 20 N -0.27 -3.84 3.60 -63.96 -0.23 -4.07 16 21 C 0.08 0.94 11.11 59.84 0.66 1.61 16 22 C -0.02 -0.13 5.87 -28.04 -0.16 -0.30 16 23 C -0.60 -4.11 6.33 37.06 0.23 -3.88 16 24 S 2.43 26.02 5.34 -107.50 -0.57 25.45 16 25 O -0.93 -13.20 17.83 -57.81 -1.03 -14.23 16 26 O -0.94 -12.45 18.11 -57.81 -1.05 -13.50 16 27 C -0.52 -6.34 6.50 35.98 0.23 -6.11 16 28 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 29 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.10 2.40 6.07 -51.93 -0.32 2.08 16 31 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 32 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 33 H 0.05 0.67 6.78 -51.93 -0.35 0.31 16 34 H 0.09 1.43 6.99 -51.93 -0.36 1.07 16 35 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.10 1.22 7.94 -51.93 -0.41 0.81 16 38 H 0.10 0.83 8.12 -51.93 -0.42 0.40 16 39 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.14 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.14 0.68 8.14 -51.92 -0.42 0.25 16 42 H 0.14 1.39 8.14 -51.93 -0.42 0.97 16 43 H 0.14 1.91 8.14 -51.93 -0.42 1.48 16 LS Contribution 366.13 15.07 5.52 5.52 Total: -1.00 -35.66 366.13 -8.08 -43.74 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -5.94 Total: 0.96 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: -0.38 Total: -7.75 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: 0.31 Total: -42.50 kcal Atomic # 8 Polarization: -38.31 SS G_CDS: -1.99 Total: -40.30 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Atomic # 16 Polarization: 26.02 SS G_CDS: -0.57 Total: 25.45 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.66 -8.08 -43.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361995256.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.146 kcal (2) G-P(sol) polarization free energy of solvation -35.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds