Wall clock time and date at job start Tue Mar 31 2020 23:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.47122 * 2 1 4 4 C 1.46499 * 119.99913 * 266.19222 * 3 2 1 5 5 C 1.50702 * 109.47377 * 270.00441 * 4 3 2 6 6 H 1.07996 * 119.99611 * 359.97438 * 5 4 3 7 7 C 1.37874 * 119.99935 * 180.02562 * 5 4 3 8 8 N 1.31519 * 120.00370 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00089 * 179.97438 * 7 5 4 10 10 H 1.48509 * 109.47064 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47016 * 119.99513 * 9 7 5 12 12 H 1.48503 * 109.47362 * 239.99950 * 9 7 5 13 13 C 1.34767 * 120.00148 * 86.19824 * 3 2 1 14 14 O 1.21629 * 120.00270 * 184.57259 * 13 3 2 15 15 C 1.47168 * 119.99717 * 4.57057 * 13 3 2 16 16 C 1.38034 * 127.03505 * 258.29884 * 15 13 3 17 17 C 1.39146 * 106.08435 * 179.66353 * 16 15 13 18 18 N 1.31309 * 107.35828 * 0.10904 * 17 16 15 19 19 N 1.28420 * 111.03753 * 359.90087 * 18 17 16 20 20 C 1.46501 * 125.20433 * 180.02562 * 19 18 17 21 21 C 1.50580 * 127.33262 * 180.25073 * 17 16 15 22 22 C 1.52803 * 110.64982 * 340.59985 * 21 17 16 23 23 S 1.81724 * 109.20481 * 53.30548 * 22 21 17 24 24 O 1.42107 * 108.71693 * 47.47184 * 23 22 21 25 25 O 1.42100 * 108.71892 * 178.85757 * 23 22 21 26 26 C 1.50639 * 126.74992 * 359.53251 * 16 15 13 27 27 H 1.08992 * 109.47320 * 184.80901 * 1 2 3 28 28 H 1.09008 * 109.46638 * 304.80577 * 1 2 3 29 29 H 1.08997 * 109.47700 * 64.80057 * 1 2 3 30 30 H 1.09001 * 109.46740 * 240.00162 * 2 1 3 31 31 H 1.08998 * 109.47462 * 120.00189 * 2 1 3 32 32 H 1.08999 * 109.47107 * 30.00253 * 4 3 2 33 33 H 1.09003 * 109.47168 * 150.00280 * 4 3 2 34 34 H 0.96995 * 119.99988 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.47486 * 274.97769 * 20 19 18 36 36 H 1.09003 * 109.46865 * 34.97717 * 20 19 18 37 37 H 1.08997 * 109.47077 * 154.97704 * 20 19 18 38 38 H 1.08996 * 109.23892 * 100.89662 * 21 17 16 39 39 H 1.08994 * 109.24180 * 220.29482 * 21 17 16 40 40 H 1.09012 * 109.51325 * 173.21932 * 22 21 17 41 41 H 1.09003 * 109.51845 * 293.38056 * 22 21 17 42 42 H 1.08997 * 109.67339 * 281.82963 * 26 16 15 43 43 H 1.08997 * 109.68286 * 42.37890 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3419 2.0438 -1.2659 5 6 3.7895 1.7983 -1.6058 6 1 4.4067 1.2082 -0.9446 7 6 4.3260 2.3280 -2.7601 8 7 3.5744 3.0470 -3.5650 9 14 6.1204 2.0244 -3.1810 10 1 6.7435 1.1919 -2.1208 11 1 6.2104 1.3167 -4.4835 12 1 6.8340 3.3235 -3.2731 13 6 2.1700 2.0424 1.1645 14 8 2.4954 3.2143 1.1607 15 6 1.9419 1.3462 2.4409 16 6 0.8227 1.4291 3.2447 17 6 1.0652 0.5934 4.3305 18 7 2.2550 0.0647 4.1599 19 7 2.7925 0.4808 3.0704 20 6 4.1151 0.0884 2.5775 21 6 0.1517 0.3231 5.4967 22 6 -0.9006 1.4237 5.6233 23 16 -1.7558 1.6190 4.0318 24 8 -2.1280 0.3337 3.5534 25 8 -2.7494 2.6257 4.1685 26 6 -0.4080 2.2605 2.9932 27 1 -0.3633 -1.0240 0.0861 28 1 -0.3633 0.5866 0.8439 29 1 -0.3634 0.4375 -0.9298 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.7097 1.6425 -2.0580 33 1 2.1679 3.1155 -1.1700 34 1 3.9517 3.4193 -4.3773 35 1 4.8756 0.7222 3.0337 36 1 4.3057 -0.9527 2.8381 37 1 4.1481 0.2037 1.4942 38 1 -0.3465 -0.6348 5.3480 39 1 0.7410 0.2824 6.4127 40 1 -1.6223 1.1506 6.3934 41 1 -0.4158 2.3618 5.8937 42 1 -0.2077 3.3001 3.2525 43 1 -0.6894 2.1914 1.9425 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362076273.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:01 Heat of formation + Delta-G solvation = -19.147537 kcal Electronic energy + Delta-G solvation = -29157.654357 eV Core-core repulsion = 25139.522570 eV Total energy + Delta-G solvation = -4018.131787 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.78277 -39.01311 -37.23882 -36.17646 -35.72790 -35.51217 -33.10144 -32.64969 -31.90681 -30.25334 -28.95043 -27.15842 -26.72991 -24.04294 -23.72693 -23.15611 -21.37251 -20.66023 -18.89780 -18.65727 -17.35839 -16.93154 -16.58990 -16.54923 -16.38893 -15.98740 -15.53559 -15.16547 -14.74899 -14.57543 -14.38232 -13.97306 -13.85376 -13.55021 -13.35609 -13.08485 -12.91659 -12.74224 -12.61982 -12.42853 -12.25234 -12.17700 -12.14986 -11.98100 -11.73530 -11.37558 -11.20582 -11.05664 -10.98257 -10.86890 -10.67897 -10.38689 -10.29938 -9.81905 -9.49793 -9.00872 -8.86183 -8.57820 -7.94330 -6.19279 -4.25755 -0.18124 1.61845 2.17475 2.30937 2.44477 3.08884 3.19441 3.27382 3.28880 3.46021 3.59612 3.70019 4.15986 4.29084 4.30550 4.42614 4.58763 4.74990 4.84677 4.89246 5.04077 5.06190 5.14816 5.16684 5.22952 5.37928 5.42965 5.48389 5.50854 5.61999 5.65646 5.77951 6.01664 6.12456 6.26825 6.43178 6.58915 6.86352 7.22415 7.30165 7.74706 7.91542 8.03504 8.08358 8.58894 8.79624 9.39906 10.88859 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.018378 B = 0.003638 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.201368 B = 7695.053493 C = 8381.438018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.105 3.895 3 N -0.581 5.581 4 C 0.244 3.756 5 C -0.533 4.533 6 H 0.057 0.943 7 C 0.064 3.936 8 N -0.890 5.890 9 Si 0.899 3.101 10 H -0.274 1.274 11 H -0.282 1.282 12 H -0.282 1.282 13 C 0.574 3.426 14 O -0.517 6.517 15 C 0.028 3.972 16 C -0.166 4.166 17 C 0.018 3.982 18 N -0.273 5.273 19 N -0.266 5.266 20 C 0.082 3.918 21 C -0.015 4.015 22 C -0.600 4.600 23 S 2.423 3.577 24 O -0.926 6.926 25 O -0.939 6.939 26 C -0.523 4.523 27 H 0.065 0.935 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.058 0.942 32 H 0.039 0.961 33 H 0.048 0.952 34 H 0.265 0.735 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.142 0.858 41 H 0.137 0.863 42 H 0.146 0.854 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.379 -7.593 16.471 19.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.019 4.019 3 N -0.312 5.312 4 C 0.125 3.875 5 C -0.572 4.572 6 H 0.075 0.925 7 C -0.139 4.139 8 N -0.528 5.528 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.208 1.208 13 C 0.356 3.644 14 O -0.392 6.392 15 C -0.103 4.103 16 C -0.177 4.177 17 C -0.141 4.141 18 N -0.105 5.105 19 N -0.052 5.052 20 C -0.058 4.058 21 C -0.055 4.055 22 C -0.730 4.730 23 S 2.605 3.395 24 O -0.923 6.923 25 O -0.936 6.936 26 C -0.652 4.652 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.108 0.892 31 H 0.077 0.923 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.107 0.893 36 H 0.118 0.882 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.160 0.840 41 H 0.156 0.844 42 H 0.163 0.837 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -6.142 -7.810 16.435 19.205 hybrid contribution 1.461 0.663 -0.584 1.707 sum -4.681 -7.147 15.851 18.007 Atomic orbital electron populations 1.22262 0.96027 1.02214 1.02469 1.21488 0.94266 0.83552 1.02567 1.48342 1.61975 1.13359 1.07542 1.19445 0.96106 0.94388 0.77536 1.21369 0.95391 1.33616 1.06776 0.92468 1.24925 0.98216 0.94722 0.96010 1.69931 1.36045 1.33944 1.12856 0.86436 0.84539 0.78124 0.78246 1.19824 1.20824 1.20790 1.16964 0.79307 0.86249 0.81852 1.90837 1.46640 1.15254 1.86424 1.21717 0.92351 0.98119 0.98153 1.18898 0.96086 1.05313 0.97437 1.21569 0.94548 1.00184 0.97763 1.73123 1.09776 1.22802 1.04757 1.45571 1.14902 1.30260 1.14487 1.22354 0.78460 1.03026 1.01941 1.19282 0.93109 0.97452 0.95637 1.30070 1.11481 1.08475 1.22932 1.07904 0.76866 0.75839 0.78909 1.93599 1.80697 1.39378 1.78598 1.93609 1.53954 1.60360 1.85691 1.28705 1.10407 1.09511 1.16577 0.91574 0.92842 0.91772 0.89190 0.92344 0.94322 0.93415 0.92537 0.89254 0.88160 0.87720 0.88011 0.88054 0.83961 0.84420 0.83651 0.84021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.46 10.22 37.16 0.38 -2.08 16 2 C 0.11 1.68 5.94 -4.04 -0.02 1.66 16 3 N -0.58 -11.59 2.46 -176.43 -0.43 -12.02 16 4 C 0.24 5.95 5.18 -5.19 -0.03 5.92 16 5 C -0.53 -13.97 9.39 -34.44 -0.32 -14.29 16 6 H 0.06 1.46 7.81 -52.49 -0.41 1.05 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -25.16 13.29 55.43 0.74 -24.43 16 9 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 10 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 C 0.57 11.60 6.66 -12.64 -0.08 11.51 16 14 O -0.52 -12.53 16.66 5.25 0.09 -12.45 16 15 C 0.03 0.46 4.99 -82.15 -0.41 0.05 16 16 C -0.17 -2.37 5.60 -104.39 -0.59 -2.95 16 17 C 0.02 0.22 6.91 -82.54 -0.57 -0.35 16 18 N -0.27 -3.80 11.91 33.57 0.40 -3.40 16 19 N -0.27 -3.89 3.42 -63.95 -0.22 -4.11 16 20 C 0.08 0.98 11.05 59.85 0.66 1.64 16 21 C -0.02 -0.13 5.87 -28.04 -0.16 -0.30 16 22 C -0.60 -4.19 6.33 37.06 0.23 -3.95 16 23 S 2.42 25.31 5.34 -107.50 -0.57 24.74 16 24 O -0.93 -12.26 17.83 -57.81 -1.03 -13.29 16 25 O -0.94 -12.33 18.11 -57.81 -1.05 -13.37 16 26 C -0.52 -6.31 6.34 35.98 0.23 -6.08 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.05 0.77 6.06 -51.92 -0.31 0.45 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.09 1.42 8.04 -51.93 -0.42 1.01 16 31 H 0.06 0.85 6.51 -51.93 -0.34 0.52 16 32 H 0.04 0.96 8.07 -51.93 -0.42 0.54 16 33 H 0.05 1.32 7.36 -51.93 -0.38 0.94 16 34 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 35 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.10 1.39 7.66 -51.93 -0.40 1.00 16 38 H 0.10 0.79 8.12 -51.93 -0.42 0.37 16 39 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.14 0.61 8.14 -51.92 -0.42 0.19 16 41 H 0.14 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.15 1.52 8.14 -51.93 -0.42 1.09 16 43 H 0.14 1.75 6.63 -51.93 -0.34 1.41 16 LS Contribution 369.52 15.07 5.57 5.57 Total: -1.00 -36.44 369.52 -8.28 -44.72 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -5.96 Total: 0.07 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: -0.78 Total: -7.59 kcal Atomic # 7 Polarization: -44.43 SS G_CDS: 0.48 Total: -43.95 kcal Atomic # 8 Polarization: -37.12 SS G_CDS: -1.99 Total: -39.11 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: 25.31 SS G_CDS: -0.57 Total: 24.74 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.44 -8.28 -44.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362076273.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.573 kcal (2) G-P(sol) polarization free energy of solvation -36.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds