Wall clock time and date at job start Tue Mar 31 2020 23:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46642 * 2 1 4 4 C 1.50697 * 109.47106 * 240.00164 * 2 1 3 5 5 H 1.07991 * 120.00123 * 239.99540 * 4 2 1 6 6 C 1.37875 * 119.99923 * 59.99882 * 4 2 1 7 7 N 1.31518 * 120.00313 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00251 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46751 * 59.99678 * 8 6 4 10 10 H 1.48498 * 109.47390 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46939 * 300.00048 * 8 6 4 12 12 N 1.46895 * 109.47259 * 119.99708 * 2 1 3 13 13 C 1.46898 * 111.00306 * 275.00475 * 12 2 1 14 14 H 1.08995 * 109.47556 * 35.00073 * 13 12 2 15 15 C 1.53002 * 109.46972 * 274.99657 * 13 12 2 16 16 C 1.50704 * 109.47010 * 155.00438 * 13 12 2 17 17 O 1.21280 * 120.00285 * 359.97438 * 16 13 12 18 18 N 1.34781 * 119.99645 * 180.02562 * 16 13 12 19 19 C 1.39926 * 119.99504 * 175.38179 * 18 16 13 20 20 C 1.38872 * 120.06607 * 214.79853 * 19 18 16 21 21 C 1.38114 * 119.92796 * 179.74935 * 20 19 18 22 22 C 1.38283 * 120.06853 * 0.53403 * 21 20 19 23 23 S 1.76202 * 119.92995 * 179.72259 * 22 21 20 24 24 N 1.65600 * 107.21820 * 270.02391 * 23 22 21 25 25 O 1.42098 * 106.40260 * 23.56561 * 23 22 21 26 26 O 1.42101 * 106.39978 * 156.48057 * 23 22 21 27 27 C 1.38287 * 120.14427 * 359.74452 * 22 21 20 28 28 C 1.38116 * 120.06412 * 359.97438 * 27 22 21 29 29 H 1.09004 * 109.46642 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46794 * 299.99622 * 1 2 3 31 31 H 1.08987 * 109.47294 * 59.99783 * 1 2 3 32 32 H 0.96998 * 120.00551 * 179.97438 * 7 6 4 33 33 H 1.00903 * 110.99630 * 38.95792 * 12 2 1 34 34 H 1.08993 * 109.47254 * 180.02562 * 15 13 12 35 35 H 1.09004 * 109.46928 * 60.00356 * 15 13 12 36 36 H 1.08995 * 109.47320 * 300.00560 * 15 13 12 37 37 H 0.96991 * 120.00045 * 355.37530 * 18 16 13 38 38 H 1.07997 * 120.03796 * 0.03487 * 20 19 18 39 39 H 1.07999 * 119.96967 * 180.27928 * 21 20 19 40 40 H 0.97000 * 119.99603 * 359.97438 * 24 23 22 41 41 H 0.97005 * 119.99749 * 179.97438 * 24 23 22 42 42 H 1.07997 * 119.96657 * 179.97438 * 27 22 21 43 43 H 1.08003 * 120.02964 * 179.97438 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5883 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3225 -1.1193 -4.0080 9 1 1.8281 -2.5197 -4.0082 10 1 1.8268 -0.4197 -5.2205 11 1 3.8075 -1.1187 -4.0078 12 7 2.0197 -0.6924 1.1994 13 6 2.0825 0.2226 2.3469 14 1 1.2576 0.9329 2.2908 15 6 3.4111 0.9810 2.3224 16 6 1.9787 -0.5677 3.6259 17 8 1.8634 -1.7743 3.5855 18 7 2.0131 0.0666 4.8146 19 6 1.8201 -0.6545 5.9981 20 6 1.1566 -0.0697 7.0687 21 6 0.9630 -0.7859 8.2337 22 6 1.4389 -2.0800 8.3386 23 16 1.1964 -2.9878 9.8292 24 7 2.5023 -2.6894 10.8028 25 8 0.0727 -2.4055 10.4754 26 8 1.2641 -4.3628 9.4771 27 6 2.1051 -2.6632 7.2764 28 6 2.2967 -1.9543 6.1066 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 0.7086 1.1614 -3.4843 33 1 1.4496 -1.4979 1.4100 34 1 3.4579 1.6596 3.1740 35 1 3.4862 1.5526 1.3973 36 1 4.2359 0.2707 2.3785 37 1 2.1717 1.0228 4.8496 38 1 0.7882 0.9423 6.9889 39 1 0.4431 -0.3333 9.0652 40 1 3.2112 -2.1023 10.4969 41 1 2.5582 -3.1017 11.6791 42 1 2.4759 -3.6739 7.3616 43 1 2.8175 -2.4101 5.2775 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363810158.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:30 Heat of formation + Delta-G solvation = -77.458500 kcal Electronic energy + Delta-G solvation = -26873.104639 eV Core-core repulsion = 22852.444299 eV Total energy + Delta-G solvation = -4020.660340 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.89406 -38.94442 -37.40866 -36.22019 -36.08965 -35.11852 -33.55372 -33.10754 -31.41543 -31.01677 -29.74983 -27.13671 -25.25428 -24.64650 -23.43344 -22.66073 -20.53306 -19.88732 -19.74106 -18.78091 -18.18593 -17.69308 -17.33512 -16.38404 -16.24643 -16.05796 -15.58866 -15.11360 -14.78827 -14.74082 -14.63488 -14.03865 -13.77994 -13.47475 -13.34399 -12.83654 -12.79240 -12.45712 -12.36063 -12.25421 -12.10614 -11.98242 -11.79358 -11.67614 -11.45200 -11.26304 -10.95435 -10.89619 -10.86854 -10.79263 -10.60823 -10.18881 -10.04346 -9.70746 -9.37176 -9.07282 -8.79320 -8.40679 -7.43422 -6.03997 -4.06931 0.06866 0.42516 0.97523 2.40474 2.67918 2.84925 3.14209 3.32823 3.36429 3.40484 3.45080 4.16819 4.39307 4.47298 4.52161 4.66937 4.90466 4.96072 5.13230 5.18925 5.27889 5.37658 5.49116 5.51583 5.57644 5.59537 5.78501 5.85279 5.92159 6.07280 6.11285 6.48026 6.56894 6.57541 6.61492 6.75371 6.98257 7.01660 7.23520 7.66909 7.81129 7.93109 8.17219 8.41461 8.50569 9.00095 9.58450 11.03224 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.029141 B = 0.001979 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.618186 B =14148.583270 C =14432.111302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.212 3.788 3 H 0.037 0.963 4 C -0.495 4.495 5 H 0.063 0.937 6 C 0.056 3.944 7 N -0.898 5.898 8 Si 0.900 3.100 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.277 1.277 12 N -0.666 5.666 13 C 0.070 3.930 14 H 0.067 0.933 15 C -0.134 4.134 16 C 0.516 3.484 17 O -0.501 6.501 18 N -0.681 5.681 19 C 0.217 3.783 20 C -0.173 4.173 21 C 0.001 3.999 22 C -0.701 4.701 23 S 2.705 3.295 24 N -1.252 6.252 25 O -0.967 6.967 26 O -0.965 6.965 27 C 0.002 3.998 28 C -0.147 4.147 29 H 0.030 0.970 30 H 0.002 0.998 31 H 0.092 0.908 32 H 0.261 0.739 33 H 0.342 0.658 34 H 0.047 0.953 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.416 0.584 38 H 0.137 0.863 39 H 0.145 0.855 40 H 0.417 0.583 41 H 0.419 0.581 42 H 0.145 0.855 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.358 1.382 26.237 26.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.105 3.895 3 H 0.055 0.945 4 C -0.533 4.533 5 H 0.082 0.918 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.728 3.272 9 H -0.203 1.203 10 H -0.215 1.215 11 H -0.203 1.203 12 N -0.301 5.301 13 C -0.044 4.044 14 H 0.085 0.915 15 C -0.192 4.192 16 C 0.305 3.695 17 O -0.373 6.373 18 N -0.326 5.326 19 C 0.120 3.880 20 C -0.194 4.194 21 C -0.019 4.019 22 C -0.790 4.790 23 S 2.794 3.206 24 N -0.926 5.926 25 O -0.957 6.957 26 O -0.954 6.954 27 C -0.018 4.018 28 C -0.168 4.168 29 H 0.049 0.951 30 H 0.021 0.979 31 H 0.110 0.890 32 H 0.070 0.930 33 H 0.162 0.838 34 H 0.066 0.934 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.253 0.747 38 H 0.155 0.845 39 H 0.163 0.837 40 H 0.243 0.757 41 H 0.249 0.751 42 H 0.163 0.837 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 3.955 0.126 25.853 26.154 hybrid contribution -0.035 0.831 -0.972 1.279 sum 3.920 0.957 24.882 25.207 Atomic orbital electron populations 1.22478 1.00681 0.99505 1.00447 1.19270 0.89566 0.94499 0.86170 0.94537 1.21059 1.30396 1.12546 0.89341 0.91832 1.24943 0.95280 0.95211 0.99074 1.69861 1.37182 1.23182 1.23565 0.86529 0.79165 0.79656 0.81847 1.20317 1.21473 1.20257 1.60924 1.59291 1.08332 1.01522 1.21512 0.99447 0.95233 0.88160 0.91509 1.21765 0.95918 0.99351 1.02166 1.21555 0.74069 0.88896 0.85005 1.90692 1.45695 1.14293 1.86636 1.43923 1.71618 1.12676 1.04400 1.18203 0.91662 0.92413 0.85707 1.21043 1.02532 1.01908 0.93943 1.20708 0.92476 0.91177 0.97532 1.30351 1.18426 1.09460 1.20761 1.01381 0.72627 0.73543 0.73010 1.53092 1.41501 1.65453 1.32542 1.93595 1.49151 1.78582 1.74326 1.93609 1.85950 1.32315 1.83526 1.20888 0.91203 0.98890 0.90812 1.21532 1.01915 0.94300 0.99019 0.95107 0.97870 0.88984 0.92957 0.83800 0.93398 0.90397 0.91634 0.74738 0.84474 0.83724 0.75654 0.75114 0.83682 0.82949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.03 8.92 37.16 0.33 -3.70 16 2 C 0.21 5.10 2.38 -68.87 -0.16 4.93 16 3 H 0.04 0.93 7.11 -51.93 -0.37 0.56 16 4 C -0.49 -13.39 8.84 -34.44 -0.30 -13.69 16 5 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 6 C 0.06 1.51 5.30 -17.82 -0.09 1.41 16 7 N -0.90 -24.99 11.32 55.43 0.63 -24.36 16 8 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 N -0.67 -13.80 5.92 -102.17 -0.60 -14.40 16 13 C 0.07 1.12 2.85 -68.86 -0.20 0.92 16 14 H 0.07 1.04 7.11 -51.93 -0.37 0.67 16 15 C -0.13 -1.83 9.29 37.16 0.35 -1.48 16 16 C 0.52 7.57 7.02 -10.98 -0.08 7.50 16 17 O -0.50 -8.98 13.08 5.56 0.07 -8.90 16 18 N -0.68 -7.21 5.26 -9.86 -0.05 -7.27 16 19 C 0.22 2.36 6.30 -83.70 -0.53 1.84 16 20 C -0.17 -1.50 9.97 -39.39 -0.39 -1.89 16 21 C 0.00 0.01 9.51 -39.61 -0.38 -0.37 16 22 C -0.70 -6.34 5.94 -39.55 -0.24 -6.57 16 23 S 2.70 22.77 6.28 -107.50 -0.68 22.10 16 24 N -1.25 -5.17 9.55 60.35 0.58 -4.60 16 25 O -0.97 -10.96 17.28 -57.17 -0.99 -11.95 16 26 O -0.96 -11.54 17.28 -57.17 -0.99 -12.53 16 27 C 0.00 0.02 9.51 -39.61 -0.38 -0.35 16 28 C -0.15 -1.74 8.70 -39.39 -0.34 -2.09 16 29 H 0.03 0.71 8.13 -51.93 -0.42 0.29 16 30 H 0.00 0.05 7.43 -51.93 -0.39 -0.34 16 31 H 0.09 2.39 6.07 -51.94 -0.32 2.07 16 32 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 33 H 0.34 7.36 7.19 -39.29 -0.28 7.08 16 34 H 0.05 0.45 7.47 -51.93 -0.39 0.07 16 35 H 0.08 1.21 7.43 -51.93 -0.39 0.82 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.42 3.01 8.11 -40.82 -0.33 2.68 16 38 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.15 0.93 7.61 -52.49 -0.40 0.53 16 40 H 0.42 0.79 8.92 -34.47 -0.31 0.48 16 41 H 0.42 1.08 8.96 -34.47 -0.31 0.77 16 42 H 0.15 1.29 7.61 -52.49 -0.40 0.89 16 43 H 0.15 2.05 6.23 -52.48 -0.33 1.72 16 LS Contribution 369.06 15.07 5.56 5.56 Total: -1.00 -35.78 369.06 -9.28 -45.07 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -5.38 Total: 8.58 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: -2.41 Total: -13.54 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: 0.55 Total: -50.63 kcal Atomic # 8 Polarization: -31.48 SS G_CDS: -1.90 Total: -33.38 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 22.77 SS G_CDS: -0.68 Total: 22.10 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.78 -9.28 -45.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363810158.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.393 kcal (2) G-P(sol) polarization free energy of solvation -35.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds