Wall clock time and date at job start Tue Mar 31 2020 23:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.46826 * 2 1 4 4 C 1.50700 * 109.47063 * 119.99599 * 2 1 3 5 5 H 1.07996 * 119.99971 * 120.00058 * 4 2 1 6 6 C 1.37880 * 120.00318 * 299.99959 * 4 2 1 7 7 N 1.31519 * 119.99449 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00355 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46756 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47216 * 120.00052 * 8 6 4 11 11 H 1.48498 * 109.47218 * 240.00208 * 8 6 4 12 12 N 1.46899 * 109.46948 * 239.99678 * 2 1 3 13 13 C 1.46895 * 110.99911 * 85.00368 * 12 2 1 14 14 H 1.08999 * 109.47360 * 324.99570 * 13 12 2 15 15 C 1.53006 * 109.47564 * 84.99587 * 13 12 2 16 16 C 1.50701 * 109.46984 * 204.99605 * 13 12 2 17 17 O 1.21290 * 120.00073 * 0.02562 * 16 13 12 18 18 N 1.34775 * 120.00052 * 179.97438 * 16 13 12 19 19 C 1.39929 * 120.00180 * 185.27269 * 18 16 13 20 20 C 1.38867 * 120.07037 * 33.29458 * 19 18 16 21 21 C 1.38114 * 119.93449 * 179.97438 * 20 19 18 22 22 C 1.38287 * 120.06387 * 0.02562 * 21 20 19 23 23 S 1.76199 * 119.92607 * 179.70111 * 22 21 20 24 24 N 1.65597 * 107.21686 * 90.00378 * 23 22 21 25 25 O 1.42102 * 106.40062 * 203.54492 * 23 22 21 26 26 O 1.42100 * 106.40491 * 336.46175 * 23 22 21 27 27 C 1.38282 * 120.14081 * 359.97438 * 22 21 20 28 28 C 1.38109 * 120.07227 * 359.97438 * 27 22 21 29 29 H 1.09001 * 109.47041 * 300.00379 * 1 2 3 30 30 H 1.08998 * 109.46854 * 60.00253 * 1 2 3 31 31 H 1.08995 * 109.46896 * 180.02562 * 1 2 3 32 32 H 0.97005 * 119.99764 * 180.02562 * 7 6 4 33 33 H 1.00903 * 110.99684 * 208.95171 * 12 2 1 34 34 H 1.08999 * 109.46723 * 60.00189 * 15 13 12 35 35 H 1.08994 * 109.46839 * 179.97438 * 15 13 12 36 36 H 1.08991 * 109.47075 * 300.00077 * 15 13 12 37 37 H 0.97001 * 120.00084 * 5.27280 * 18 16 13 38 38 H 1.08007 * 120.03640 * 359.95847 * 20 19 18 39 39 H 1.07989 * 119.97005 * 180.02562 * 21 20 19 40 40 H 0.97001 * 119.99966 * 150.00213 * 24 23 22 41 41 H 0.97002 * 120.00145 * 329.99480 * 24 23 22 42 42 H 1.08003 * 119.95934 * 179.97438 * 27 22 21 43 43 H 1.08005 * 120.03294 * 180.02562 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6993 -0.2392 2.4828 7 7 0.9428 0.8298 2.6033 8 14 2.3225 -1.1192 4.0081 9 1 3.1474 -2.2861 3.6039 10 1 3.1472 -0.1855 4.8161 11 1 1.1678 -1.5863 4.8166 12 7 2.0197 -0.6926 -1.1994 13 6 2.0825 0.2225 -2.3468 14 1 1.2577 0.9328 -2.2907 15 6 3.4112 0.9808 -2.3224 16 6 1.9787 -0.5678 -3.6258 17 8 1.8632 -1.7745 -3.5854 18 7 2.0131 0.0664 -4.8145 19 6 1.8064 -0.6523 -5.9972 20 6 0.9402 -1.7376 -6.0095 21 6 0.7379 -2.4447 -7.1786 22 6 1.3972 -2.0731 -8.3359 23 16 1.1424 -2.9825 -9.8234 24 7 -0.1309 -2.2798 -10.6155 25 8 2.2899 -2.7597 -10.6314 26 8 0.7066 -4.2773 -9.4325 27 6 2.2604 -0.9928 -8.3269 28 6 2.4662 -0.2811 -7.1614 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 0.7087 1.1615 3.4844 33 1 2.9173 -1.1205 -1.0286 34 1 4.2360 0.2705 -2.3786 35 1 3.4579 1.6594 -3.1740 36 1 3.4863 1.5524 -1.3974 37 1 2.1812 1.0210 -4.8502 38 1 0.4255 -2.0288 -5.1058 39 1 0.0641 -3.2885 -7.1889 40 1 -0.1745 -2.3078 -11.5841 41 1 -0.8331 -1.8403 -10.1108 42 1 2.7741 -0.7053 -9.2324 43 1 3.1402 0.5629 -7.1552 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363810426.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:33 Heat of formation + Delta-G solvation = -78.868736 kcal Electronic energy + Delta-G solvation = -26866.512207 eV Core-core repulsion = 22845.790715 eV Total energy + Delta-G solvation = -4020.721493 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.73990 -38.80367 -37.40578 -36.27789 -36.07624 -34.95837 -33.53569 -33.18990 -31.35407 -30.89873 -29.69948 -27.09667 -25.36272 -24.66074 -23.36121 -22.68349 -20.42443 -19.85280 -19.70947 -18.69587 -18.05081 -17.67637 -17.29689 -16.60631 -16.30296 -15.77257 -15.35140 -15.01695 -14.93651 -14.49027 -14.42653 -13.96450 -13.68645 -13.55755 -13.40358 -13.26947 -12.54596 -12.49804 -12.45181 -12.34090 -12.24835 -12.16850 -11.74283 -11.61515 -11.27139 -11.15116 -10.97281 -10.82662 -10.79666 -10.73566 -10.51654 -10.22564 -10.12355 -9.61981 -9.30808 -8.94438 -8.65990 -8.56394 -7.43862 -6.11659 -4.17653 0.11891 0.50086 1.03838 2.55557 2.78257 2.91948 3.23095 3.24369 3.32878 3.37765 3.51269 4.19081 4.33835 4.50795 4.57172 4.76073 4.96072 4.99535 5.16577 5.20828 5.23532 5.26934 5.38193 5.57988 5.61424 5.63214 5.75839 5.84762 5.92372 5.99163 6.16729 6.23679 6.64854 6.65970 6.72249 7.00303 7.06219 7.18085 7.36732 7.69850 7.76041 8.13958 8.15426 8.23094 8.51171 8.91521 9.48737 10.94805 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.028983 B = 0.001984 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.841763 B =14112.567792 C =14441.931705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.214 3.786 3 H 0.005 0.995 4 C -0.518 4.518 5 H 0.062 0.938 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.283 1.283 12 N -0.665 5.665 13 C 0.072 3.928 14 H 0.104 0.896 15 C -0.178 4.178 16 C 0.517 3.483 17 O -0.486 6.486 18 N -0.685 5.685 19 C 0.223 3.777 20 C -0.147 4.147 21 C 0.001 3.999 22 C -0.705 4.705 23 S 2.706 3.294 24 N -1.250 6.250 25 O -0.968 6.968 26 O -0.963 6.963 27 C 0.004 3.996 28 C -0.176 4.176 29 H 0.083 0.917 30 H 0.002 0.998 31 H 0.034 0.966 32 H 0.261 0.739 33 H 0.340 0.660 34 H 0.060 0.940 35 H 0.053 0.947 36 H 0.077 0.923 37 H 0.413 0.587 38 H 0.149 0.851 39 H 0.144 0.856 40 H 0.419 0.581 41 H 0.417 0.583 42 H 0.143 0.857 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.823 2.857 -25.030 25.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.107 3.893 3 H 0.023 0.977 4 C -0.556 4.556 5 H 0.080 0.920 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.209 1.209 12 N -0.297 5.297 13 C -0.043 4.043 14 H 0.122 0.878 15 C -0.237 4.237 16 C 0.304 3.696 17 O -0.356 6.356 18 N -0.332 5.332 19 C 0.125 3.875 20 C -0.169 4.169 21 C -0.019 4.019 22 C -0.794 4.794 23 S 2.795 3.205 24 N -0.923 5.923 25 O -0.957 6.957 26 O -0.952 6.952 27 C -0.016 4.016 28 C -0.198 4.198 29 H 0.101 0.899 30 H 0.021 0.979 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.159 0.841 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.249 0.751 38 H 0.166 0.834 39 H 0.162 0.838 40 H 0.249 0.751 41 H 0.244 0.756 42 H 0.161 0.839 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.973 1.015 -25.053 25.092 hybrid contribution 0.701 1.458 1.481 2.194 sum -0.272 2.473 -23.571 23.702 Atomic orbital electron populations 1.21764 0.97790 0.99678 0.99276 1.19172 0.92608 0.92413 0.85093 0.97708 1.21252 1.31552 1.12618 0.90208 0.92006 1.24909 0.94971 0.94992 0.99108 1.69897 1.36567 1.22904 1.23505 0.86436 0.78655 0.79630 0.82675 1.19686 1.21087 1.20925 1.60446 1.33157 1.31295 1.04790 1.21446 0.98725 0.93911 0.90174 0.87840 1.22497 0.97375 1.00750 1.03073 1.21557 0.74654 0.88959 0.84420 1.90710 1.44184 1.14220 1.86521 1.44083 1.71918 1.12551 1.04613 1.18178 0.91200 0.92107 0.85977 1.21398 0.99064 0.96792 0.99601 1.20856 0.94384 0.96146 0.90557 1.30431 1.14124 1.15543 1.19295 1.01363 0.72737 0.73430 0.73011 1.53168 1.42150 1.77915 1.19110 1.93585 1.48585 1.85802 1.67761 1.93617 1.81696 1.36698 1.83193 1.20664 0.92146 0.90469 0.98322 1.21011 1.02551 1.03728 0.92513 0.89861 0.97938 0.94702 0.92908 0.84071 0.92100 0.92773 0.90401 0.75056 0.83380 0.83785 0.75102 0.75582 0.83887 0.84624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 9.18 37.16 0.34 -2.69 16 2 C 0.21 5.09 2.41 -68.86 -0.17 4.93 16 3 H 0.01 0.13 7.11 -51.93 -0.37 -0.24 16 4 C -0.52 -13.73 8.59 -34.44 -0.30 -14.02 16 5 H 0.06 1.65 7.62 -52.49 -0.40 1.25 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -24.48 11.32 55.43 0.63 -23.85 16 8 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 9 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 N -0.67 -13.64 5.54 -102.17 -0.57 -14.20 16 13 C 0.07 1.14 2.82 -68.86 -0.19 0.94 16 14 H 0.10 1.60 7.11 -51.93 -0.37 1.23 16 15 C -0.18 -2.30 9.04 37.16 0.34 -1.96 16 16 C 0.52 7.80 6.96 -10.99 -0.08 7.73 16 17 O -0.49 -9.23 14.11 5.55 0.08 -9.15 16 18 N -0.69 -7.53 5.27 -9.86 -0.05 -7.58 16 19 C 0.22 2.53 6.28 -83.70 -0.53 2.01 16 20 C -0.15 -1.85 8.66 -39.39 -0.34 -2.19 16 21 C 0.00 0.01 9.51 -39.61 -0.38 -0.37 16 22 C -0.70 -6.65 5.98 -39.55 -0.24 -6.88 16 23 S 2.71 23.36 6.28 -107.50 -0.68 22.69 16 24 N -1.25 -5.44 9.52 60.35 0.57 -4.86 16 25 O -0.97 -10.95 17.27 -57.17 -0.99 -11.94 16 26 O -0.96 -11.79 17.28 -57.17 -0.99 -12.78 16 27 C 0.00 0.04 9.51 -39.61 -0.38 -0.34 16 28 C -0.18 -1.60 9.96 -39.40 -0.39 -1.99 16 29 H 0.08 2.16 6.07 -51.93 -0.32 1.85 16 30 H 0.00 0.03 7.43 -51.93 -0.39 -0.35 16 31 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 33 H 0.34 7.04 7.96 -39.29 -0.31 6.73 16 34 H 0.06 0.80 8.13 -51.93 -0.42 0.37 16 35 H 0.05 0.50 7.45 -51.93 -0.39 0.12 16 36 H 0.08 1.13 7.43 -51.93 -0.39 0.75 16 37 H 0.41 3.10 8.09 -40.82 -0.33 2.77 16 38 H 0.15 2.12 6.41 -52.48 -0.34 1.78 16 39 H 0.14 1.34 7.61 -52.49 -0.40 0.94 16 40 H 0.42 1.12 8.96 -34.47 -0.31 0.81 16 41 H 0.42 0.96 8.96 -34.47 -0.31 0.66 16 42 H 0.14 0.97 7.61 -52.48 -0.40 0.57 16 43 H 0.14 0.86 8.06 -52.48 -0.42 0.44 16 LS Contribution 370.14 15.07 5.58 5.58 Total: -1.00 -35.92 370.14 -9.24 -45.16 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -5.41 Total: 8.36 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: -2.40 Total: -13.27 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: 0.58 Total: -50.49 kcal Atomic # 8 Polarization: -31.97 SS G_CDS: -1.90 Total: -33.87 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: 23.36 SS G_CDS: -0.68 Total: 22.69 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.92 -9.24 -45.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363810426.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.710 kcal (2) G-P(sol) polarization free energy of solvation -35.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds