Wall clock time and date at job start Tue Mar 31 2020 23:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47018 * 2 1 4 4 C 1.52997 * 109.46917 * 119.99861 * 2 1 3 5 5 C 1.52996 * 109.47184 * 184.99882 * 4 2 1 6 6 S 1.81400 * 109.47512 * 180.02562 * 5 4 2 7 7 C 1.81403 * 101.92375 * 180.02562 * 6 5 4 8 8 O 1.42093 * 108.57765 * 294.48840 * 6 5 4 9 9 O 1.42094 * 108.57680 * 65.51242 * 6 5 4 10 10 N 1.46499 * 109.47030 * 240.00308 * 2 1 3 11 11 C 1.34771 * 120.00286 * 85.00078 * 10 2 1 12 12 O 1.21573 * 120.00013 * 359.97438 * 11 10 2 13 13 N 1.34776 * 119.99907 * 179.97438 * 11 10 2 14 14 C 1.39253 * 119.99820 * 174.84556 * 13 11 10 15 15 C 1.39685 * 119.57594 * 185.33282 * 14 13 11 16 16 C 1.38637 * 119.49738 * 179.97438 * 15 14 13 17 17 C 1.38355 * 118.67161 * 359.97438 * 16 15 14 18 18 C 1.40569 * 119.13065 * 0.02562 * 17 16 15 19 19 C 1.41335 * 119.78867 * 180.02562 * 18 17 16 20 20 H 1.07998 * 120.00077 * 0.02562 * 19 18 17 21 21 C 1.40027 * 119.99870 * 180.02562 * 19 18 17 22 22 N 1.30747 * 120.00283 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99848 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47320 * 60.00183 * 23 21 19 25 25 H 1.48500 * 109.47409 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47112 * 300.00091 * 23 21 19 27 27 N 1.31902 * 119.57302 * 5.05465 * 14 13 11 28 28 H 1.08996 * 109.47018 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46979 * 300.00081 * 1 2 3 30 30 H 1.09006 * 109.47091 * 59.99953 * 1 2 3 31 31 H 1.08995 * 109.47601 * 304.99862 * 4 2 1 32 32 H 1.09000 * 109.46854 * 65.00315 * 4 2 1 33 33 H 1.09008 * 109.47064 * 300.00529 * 5 4 2 34 34 H 1.08998 * 109.47372 * 59.99865 * 5 4 2 35 35 H 1.08999 * 109.46996 * 59.99789 * 7 6 5 36 36 H 1.08995 * 109.47270 * 180.02562 * 7 6 5 37 37 H 1.09002 * 109.46821 * 300.00281 * 7 6 5 38 38 H 0.97001 * 119.99665 * 264.99895 * 10 2 1 39 39 H 0.96993 * 120.00297 * 354.84791 * 13 11 10 40 40 H 1.08009 * 120.24897 * 359.95594 * 15 14 13 41 41 H 1.08000 * 120.66855 * 180.02562 * 16 15 14 42 42 H 1.07994 * 120.43639 * 179.97438 * 17 16 15 43 43 H 0.96992 * 120.00007 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6133 1.3137 6 16 4.1695 -1.4690 2.7945 7 6 5.9614 -1.2163 2.6678 8 8 3.6954 -0.7781 3.9420 9 8 3.8968 -2.8569 2.6584 10 7 2.0183 -0.6905 -1.1962 11 6 2.1471 -0.0182 -2.3571 12 8 1.8575 1.1613 -2.4118 13 7 2.5968 -0.6534 -3.4574 14 6 2.6285 0.0109 -4.6808 15 6 2.9896 -0.6874 -5.8355 16 6 3.0200 -0.0245 -7.0527 17 6 2.6887 1.3184 -7.0857 18 6 2.3337 1.9652 -5.8892 19 6 1.9922 3.3366 -5.9070 20 1 2.0041 3.8840 -6.8379 21 6 1.6385 3.9855 -4.7176 22 7 1.6246 3.3229 -3.5906 23 14 1.1878 5.7981 -4.7410 24 1 0.0129 6.0048 -5.6255 25 1 0.8555 6.2435 -3.3639 26 1 2.3371 6.5874 -5.2522 27 7 2.3118 1.2902 -4.7353 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.6054 -0.2617 2.1370 32 1 1.7516 -1.7715 1.2055 33 1 3.9994 -1.0728 0.4259 34 1 3.8532 0.4369 1.3573 35 1 6.1789 -0.1482 2.6723 36 1 6.4561 -1.6918 3.5147 37 1 6.3258 -1.6574 1.7401 38 1 2.2490 -1.6317 -1.1526 39 1 2.8984 -1.5733 -3.3972 40 1 3.2434 -1.7358 -5.7803 41 1 3.2961 -0.5460 -7.9572 42 1 2.7033 1.8627 -8.0183 43 1 1.3792 3.7723 -2.7668 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364147706.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:11 Heat of formation + Delta-G solvation = -40.124664 kcal Electronic energy + Delta-G solvation = -27682.367917 eV Core-core repulsion = 23663.326493 eV Total energy + Delta-G solvation = -4019.041424 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.63343 -37.99250 -37.25250 -36.40056 -36.17124 -34.02044 -32.99130 -32.22844 -30.35028 -30.17426 -29.75622 -28.59469 -25.52311 -24.49920 -22.50366 -21.35291 -20.70202 -19.85750 -19.13813 -18.11684 -17.28261 -16.83753 -16.51863 -16.29384 -16.20601 -15.41421 -14.69275 -14.59370 -14.44346 -14.19318 -13.87715 -13.65667 -13.55790 -13.54270 -13.15060 -12.93264 -12.83163 -12.36624 -12.32463 -12.26912 -12.01890 -11.86773 -11.82784 -11.66853 -11.37249 -11.16217 -11.00401 -10.96330 -10.65718 -10.49141 -10.45523 -9.94359 -9.69806 -9.12547 -9.02098 -8.52355 -7.94987 -7.21155 -6.94498 -6.10930 -4.38741 -0.32631 2.42616 2.85112 3.13410 3.16466 3.18582 3.21844 3.28066 3.30185 3.70361 4.07077 4.17726 4.30377 4.38767 4.43711 4.65444 4.69303 4.79108 4.95575 5.24835 5.26708 5.30843 5.45779 5.56339 5.68805 5.84658 6.04136 6.08017 6.16413 6.42600 6.48024 6.61386 6.80047 6.85460 6.98874 7.24050 7.36009 7.62289 7.74287 7.82049 8.17542 8.29929 8.65890 8.80414 9.06626 9.58849 10.27151 10.49940 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013228 B = 0.002974 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.167959 B = 9413.728734 C =10487.142946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.175 3.825 3 H 0.093 0.907 4 C -0.117 4.117 5 C -0.606 4.606 6 S 2.420 3.580 7 C -0.658 4.658 8 O -0.942 6.942 9 O -0.942 6.942 10 N -0.757 5.757 11 C 0.663 3.337 12 O -0.461 6.461 13 N -0.674 5.674 14 C 0.387 3.613 15 C -0.359 4.359 16 C -0.036 4.036 17 C -0.307 4.307 18 C 0.271 3.729 19 C -0.425 4.425 20 H 0.081 0.919 21 C 0.057 3.943 22 N -0.649 5.649 23 Si 0.894 3.106 24 H -0.267 1.267 25 H -0.279 1.279 26 H -0.268 1.268 27 N -0.471 5.471 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.134 0.866 34 H 0.136 0.864 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.383 0.617 39 H 0.394 0.606 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.757 -8.763 12.792 16.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.068 3.932 3 H 0.111 0.889 4 C -0.156 4.156 5 C -0.736 4.736 6 S 2.603 3.397 7 C -0.807 4.807 8 O -0.939 6.939 9 O -0.939 6.939 10 N -0.417 5.417 11 C 0.361 3.639 12 O -0.324 6.324 13 N -0.323 5.323 14 C 0.147 3.853 15 C -0.385 4.385 16 C -0.060 4.060 17 C -0.331 4.331 18 C 0.146 3.854 19 C -0.456 4.456 20 H 0.099 0.901 21 C -0.172 4.172 22 N -0.267 5.267 23 Si 0.719 3.281 24 H -0.192 1.192 25 H -0.204 1.204 26 H -0.192 1.192 27 N -0.190 5.190 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.112 0.888 32 H 0.102 0.898 33 H 0.152 0.848 34 H 0.155 0.845 35 H 0.147 0.853 36 H 0.146 0.854 37 H 0.147 0.853 38 H 0.216 0.784 39 H 0.227 0.773 40 H 0.108 0.892 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.703 -7.541 14.456 16.720 hybrid contribution 0.945 -0.303 -1.433 1.742 sum 4.648 -7.844 13.023 15.897 Atomic orbital electron populations 1.22218 0.95424 1.01857 1.02928 1.20530 0.93625 0.97253 0.81828 0.88881 1.21673 0.90366 1.03085 1.00516 1.30323 1.07095 1.15329 1.20818 1.07821 0.78277 0.76063 0.77506 1.30275 1.26597 1.12047 1.11782 1.93598 1.78557 1.75665 1.46108 1.93596 1.83316 1.30214 1.86806 1.45434 1.73968 1.12949 1.09380 1.16451 0.80946 0.86419 0.80073 1.91388 1.48929 1.10736 1.81394 1.42581 1.67353 1.15498 1.06834 1.18341 0.93479 0.91043 0.82450 1.20436 1.25871 0.99114 0.93077 1.20543 0.95873 0.94222 0.95368 1.21618 1.17246 0.95335 0.98859 1.18381 0.88202 0.93131 0.85665 1.19539 1.38297 0.93137 0.94626 0.90076 1.26178 0.95841 0.99355 0.95859 1.70337 1.23745 1.34614 0.98020 0.86613 0.79775 0.83679 0.78052 1.19218 1.20441 1.19246 1.68697 1.20732 1.02964 1.26570 0.92827 0.92042 0.91116 0.88811 0.89814 0.84775 0.84527 0.85273 0.85438 0.85294 0.78444 0.77304 0.89214 0.88669 0.88631 0.91649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 9.48 37.16 0.35 -1.69 16 2 C 0.17 2.12 2.57 -67.93 -0.17 1.95 16 3 H 0.09 1.34 7.58 -51.93 -0.39 0.94 16 4 C -0.12 -1.02 4.76 -26.73 -0.13 -1.14 16 5 C -0.61 -4.17 5.69 37.16 0.21 -3.96 16 6 S 2.42 17.13 5.36 -107.50 -0.58 16.55 16 7 C -0.66 -2.88 10.62 101.05 1.07 -1.81 16 8 O -0.94 -10.22 18.10 -57.83 -1.05 -11.27 16 9 O -0.94 -9.99 18.10 -57.83 -1.05 -11.04 16 10 N -0.76 -10.09 4.53 -58.68 -0.27 -10.35 16 11 C 0.66 12.78 8.49 -86.92 -0.74 12.04 16 12 O -0.46 -11.19 11.76 5.30 0.06 -11.12 16 13 N -0.67 -12.84 5.39 -15.79 -0.09 -12.92 16 14 C 0.39 9.29 7.43 -154.99 -1.15 8.14 16 15 C -0.36 -7.97 9.95 -38.89 -0.39 -8.35 16 16 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 17 C -0.31 -7.72 9.83 -38.66 -0.38 -8.10 16 18 C 0.27 7.59 6.55 -84.99 -0.56 7.03 16 19 C -0.43 -11.66 9.14 -37.73 -0.34 -12.00 16 20 H 0.08 2.08 7.85 -52.49 -0.41 1.67 16 21 C 0.06 1.49 5.50 -17.34 -0.10 1.40 16 22 N -0.65 -17.74 8.98 55.55 0.50 -17.24 16 23 Si 0.89 19.13 29.56 -169.99 -5.02 14.10 16 24 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 25 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 26 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 27 N -0.47 -13.08 5.73 -10.25 -0.06 -13.14 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.13 0.80 7.75 -51.92 -0.40 0.39 16 34 H 0.14 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.13 0.41 8.14 -51.92 -0.42 -0.01 16 36 H 0.13 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.13 0.40 8.14 -51.92 -0.42 -0.03 16 38 H 0.38 3.86 8.62 -40.82 -0.35 3.51 16 39 H 0.39 5.69 8.71 -40.82 -0.36 5.34 16 40 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 41 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 42 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 43 H 0.27 6.99 8.29 -40.82 -0.34 6.65 16 LS Contribution 375.26 15.07 5.66 5.66 Total: -1.00 -38.72 375.26 -10.73 -49.45 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -6.12 Total: 9.05 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -2.72 Total: -7.72 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: 0.09 Total: -53.66 kcal Atomic # 8 Polarization: -31.40 SS G_CDS: -2.03 Total: -33.43 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.02 Total: 14.10 kcal Atomic # 16 Polarization: 17.13 SS G_CDS: -0.58 Total: 16.55 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -38.72 -10.73 -49.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364147706.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.327 kcal (2) G-P(sol) polarization free energy of solvation -38.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds