Wall clock time and date at job start Tue Mar 31 2020 23:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.47022 * 2 1 4 4 C 1.53000 * 109.46805 * 119.99217 * 2 1 3 5 5 C 1.52998 * 109.46679 * 184.99812 * 4 2 1 6 6 S 1.81404 * 109.46944 * 180.02562 * 5 4 2 7 7 C 1.81404 * 101.92304 * 180.02562 * 6 5 4 8 8 O 1.42100 * 108.57842 * 294.48981 * 6 5 4 9 9 O 1.42101 * 108.57731 * 65.51429 * 6 5 4 10 10 N 1.46495 * 109.46950 * 239.99725 * 2 1 3 11 11 C 1.34767 * 120.00362 * 85.00296 * 10 2 1 12 12 O 1.21583 * 120.00139 * 359.97438 * 11 10 2 13 13 N 1.34779 * 120.00340 * 179.97438 * 11 10 2 14 14 C 1.39459 * 120.00331 * 175.45126 * 13 11 10 15 15 C 1.38640 * 119.65182 * 186.28492 * 14 13 11 16 16 C 1.40820 * 118.67928 * 179.97438 * 15 14 13 17 17 C 1.41538 * 120.99964 * 179.97438 * 16 15 14 18 18 H 1.08002 * 119.99428 * 201.14555 * 17 16 15 19 19 C 1.40026 * 120.00253 * 21.14612 * 17 16 15 20 20 N 1.30739 * 119.99859 * 12.10498 * 19 17 16 21 21 Si 1.86797 * 120.00200 * 192.10827 * 19 17 16 22 22 H 1.48506 * 109.47186 * 89.99756 * 21 19 17 23 23 H 1.48503 * 109.47341 * 209.99953 * 21 19 17 24 24 H 1.48503 * 109.46856 * 330.00022 * 21 19 17 25 25 C 1.41169 * 118.00053 * 0.02562 * 16 15 14 26 26 C 1.36587 * 119.12968 * 0.02562 * 25 16 15 27 27 N 1.32073 * 121.26010 * 359.74330 * 26 25 16 28 28 H 1.09003 * 109.47384 * 300.00688 * 1 2 3 29 29 H 1.09004 * 109.47256 * 60.00141 * 1 2 3 30 30 H 1.08994 * 109.47190 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47230 * 305.00102 * 4 2 1 32 32 H 1.08999 * 109.46834 * 65.00256 * 4 2 1 33 33 H 1.08996 * 109.47526 * 300.00108 * 5 4 2 34 34 H 1.08999 * 109.47125 * 60.00622 * 5 4 2 35 35 H 1.09003 * 109.46769 * 59.99714 * 7 6 5 36 36 H 1.08992 * 109.47096 * 180.02562 * 7 6 5 37 37 H 1.08998 * 109.46907 * 300.00329 * 7 6 5 38 38 H 0.97007 * 119.99453 * 264.99741 * 10 2 1 39 39 H 0.96997 * 119.99519 * 355.45421 * 13 11 10 40 40 H 1.08003 * 120.66252 * 0.02562 * 15 14 13 41 41 H 0.96998 * 120.00292 * 180.02562 * 20 19 17 42 42 H 1.07998 * 120.43225 * 179.97438 * 25 16 15 43 43 H 1.08003 * 119.37046 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5648 -0.6131 1.3137 6 16 4.1695 -1.4687 2.7946 7 6 5.9614 -1.2161 2.6680 8 8 3.6953 -0.7776 3.9421 9 8 3.8968 -2.8567 2.6587 10 7 2.0183 -0.6906 -1.1961 11 6 2.1471 -0.0185 -2.3570 12 8 1.8576 1.1611 -2.4119 13 7 2.5968 -0.6537 -3.4574 14 6 2.6404 0.0155 -4.6801 15 6 2.9791 -0.6798 -5.8308 16 6 3.0163 0.0161 -7.0545 17 6 3.3563 -0.6450 -8.2589 18 1 3.7123 -0.0761 -9.1052 19 6 3.2312 -2.0365 -8.3534 20 7 2.5853 -2.6989 -7.4296 21 14 3.9871 -2.9463 -9.7991 22 1 5.3778 -3.3433 -9.4617 23 1 3.1839 -4.1598 -10.0951 24 1 4.0007 -2.0590 -10.9899 25 6 2.7053 1.3930 -7.0437 26 6 2.3839 1.9928 -5.8593 27 7 2.3544 1.3082 -4.7303 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.6053 -0.2615 2.1370 32 1 1.7516 -1.7713 1.2058 33 1 3.9994 -1.0727 0.4261 34 1 3.8531 0.4371 1.3573 35 1 6.1788 -0.1479 2.6723 36 1 6.4561 -1.6914 3.5149 37 1 6.3258 -1.6572 1.7403 38 1 2.2490 -1.6319 -1.1524 39 1 2.8901 -1.5765 -3.3987 40 1 3.2089 -1.7342 -5.7897 41 1 2.4989 -3.6628 -7.4948 42 1 2.7222 1.9649 -7.9597 43 1 2.1457 3.0461 -5.8465 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364163759.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:17 Heat of formation + Delta-G solvation = -63.272677 kcal Electronic energy + Delta-G solvation = -26955.043884 eV Core-core repulsion = 22934.998687 eV Total energy + Delta-G solvation = -4020.045197 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.95088 -38.28307 -37.31923 -36.58806 -36.31042 -34.30005 -33.75827 -32.44868 -30.56189 -30.28782 -29.82938 -28.24683 -26.03427 -24.65050 -22.48556 -21.87967 -20.84065 -20.14119 -19.20906 -18.19573 -17.70862 -17.02557 -16.58699 -16.38837 -16.11053 -15.60441 -15.11718 -14.90665 -14.43765 -14.20411 -14.15867 -13.90858 -13.66194 -13.60421 -13.44132 -13.15376 -12.89778 -12.63231 -12.48716 -12.42948 -12.33379 -12.13656 -12.01880 -11.80399 -11.47898 -11.43297 -11.21885 -11.18318 -10.91869 -10.61899 -10.29933 -10.11389 -9.80568 -9.59484 -9.41936 -8.88061 -8.00370 -7.74736 -7.01855 -6.77767 -4.65573 -0.40088 2.35180 2.68056 2.78942 2.98429 2.99068 3.02430 3.22873 3.23818 3.63132 3.81404 3.83478 4.16876 4.29423 4.38094 4.50111 4.56109 4.63758 4.67955 5.10657 5.14855 5.24511 5.28623 5.40456 5.55048 5.67687 5.70366 5.85644 6.02105 6.23895 6.53417 6.60470 6.71163 6.79904 6.91695 7.15077 7.26910 7.42955 7.48199 7.86346 8.09526 8.37134 8.45496 8.71702 8.73962 9.16315 9.72696 10.03731 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014727 B = 0.002375 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.766787 B =11787.500026 C =12776.155192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.172 3.828 3 H 0.093 0.907 4 C -0.118 4.118 5 C -0.609 4.609 6 S 2.420 3.580 7 C -0.658 4.658 8 O -0.942 6.942 9 O -0.940 6.940 10 N -0.752 5.752 11 C 0.691 3.309 12 O -0.532 6.532 13 N -0.668 5.668 14 C 0.353 3.647 15 C -0.251 4.251 16 C 0.139 3.861 17 C -0.449 4.449 18 H 0.081 0.919 19 C 0.074 3.926 20 N -0.790 5.790 21 Si 0.915 3.085 22 H -0.267 1.267 23 H -0.277 1.277 24 H -0.261 1.261 25 C -0.285 4.285 26 C 0.119 3.881 27 N -0.554 5.554 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.134 0.866 34 H 0.136 0.864 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.391 0.609 39 H 0.403 0.597 40 H 0.139 0.861 41 H 0.281 0.719 42 H 0.101 0.899 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.041 -2.124 16.687 17.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.065 3.935 3 H 0.111 0.889 4 C -0.157 4.157 5 C -0.739 4.739 6 S 2.603 3.397 7 C -0.807 4.807 8 O -0.939 6.939 9 O -0.937 6.937 10 N -0.411 5.411 11 C 0.391 3.609 12 O -0.403 6.403 13 N -0.316 5.316 14 C 0.127 3.873 15 C -0.276 4.276 16 C 0.131 3.869 17 C -0.480 4.480 18 H 0.100 0.900 19 C -0.144 4.144 20 N -0.416 5.416 21 Si 0.740 3.260 22 H -0.192 1.192 23 H -0.202 1.202 24 H -0.185 1.185 25 C -0.309 4.309 26 C -0.035 4.035 27 N -0.273 5.273 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.114 0.886 32 H 0.104 0.896 33 H 0.153 0.847 34 H 0.155 0.845 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.148 0.852 38 H 0.224 0.776 39 H 0.238 0.762 40 H 0.157 0.843 41 H 0.092 0.908 42 H 0.119 0.881 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.976 -1.250 18.202 18.486 hybrid contribution 1.317 -1.471 -2.101 2.883 sum 4.293 -2.721 16.101 16.884 Atomic orbital electron populations 1.22234 0.95139 1.02277 1.02943 1.20614 0.93865 0.97181 0.81853 0.88909 1.21681 0.90473 1.03287 1.00298 1.30348 1.07007 1.15365 1.21133 1.07841 0.78356 0.76093 0.77436 1.30273 1.26451 1.12039 1.11917 1.93601 1.78606 1.75683 1.45981 1.93608 1.83312 1.30081 1.86731 1.45346 1.73164 1.13352 1.09191 1.16098 0.79296 0.85534 0.80006 1.91012 1.53208 1.13104 1.82959 1.42566 1.66838 1.15585 1.06599 1.17992 0.96705 0.89501 0.83111 1.21784 1.13795 1.01972 0.90097 1.17587 0.86296 0.90537 0.92501 1.19623 1.38281 0.91587 0.98519 0.90048 1.25982 0.92752 0.98131 0.97536 1.69733 1.29795 1.09521 1.32566 0.86194 0.79669 0.78930 0.81255 1.19221 1.20187 1.18510 1.21646 1.14313 0.97013 0.97942 1.21459 0.96362 0.97752 0.87928 1.67203 1.24686 1.06349 1.29084 0.91716 0.91292 0.92440 0.88565 0.89551 0.84735 0.84523 0.85274 0.85337 0.85220 0.77615 0.76232 0.84340 0.90795 0.88123 0.86117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.81 9.48 37.16 0.35 -1.46 16 2 C 0.17 1.85 2.57 -67.93 -0.17 1.68 16 3 H 0.09 1.15 7.58 -51.93 -0.39 0.76 16 4 C -0.12 -0.90 4.76 -26.73 -0.13 -1.03 16 5 C -0.61 -3.61 5.69 37.16 0.21 -3.39 16 6 S 2.42 15.65 5.36 -107.50 -0.58 15.07 16 7 C -0.66 -2.50 10.62 101.05 1.07 -1.42 16 8 O -0.94 -9.53 18.10 -57.83 -1.05 -10.58 16 9 O -0.94 -9.62 18.10 -57.83 -1.05 -10.66 16 10 N -0.75 -9.34 4.53 -58.68 -0.27 -9.61 16 11 C 0.69 12.61 8.49 -86.92 -0.74 11.88 16 12 O -0.53 -12.05 14.27 5.29 0.08 -11.97 16 13 N -0.67 -12.72 5.39 -15.86 -0.09 -12.80 16 14 C 0.35 8.44 7.42 -154.68 -1.15 7.30 16 15 C -0.25 -6.26 8.67 -38.46 -0.33 -6.59 16 16 C 0.14 3.62 5.65 -106.55 -0.60 3.02 16 17 C -0.45 -11.36 9.15 -37.65 -0.34 -11.71 16 18 H 0.08 1.97 7.88 -52.49 -0.41 1.56 16 19 C 0.07 1.76 5.31 -17.35 -0.09 1.67 16 20 N -0.79 -19.01 10.50 55.55 0.58 -18.43 16 21 Si 0.92 17.62 29.58 -169.99 -5.03 12.59 16 22 H -0.27 -5.07 7.11 56.52 0.40 -4.66 16 23 H -0.28 -5.23 7.11 56.52 0.40 -4.83 16 24 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 25 C -0.29 -6.95 9.85 -39.07 -0.38 -7.34 16 26 C 0.12 2.85 11.10 -18.04 -0.20 2.65 16 27 N -0.55 -14.08 7.86 -12.75 -0.10 -14.18 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.13 0.68 7.75 -51.93 -0.40 0.28 16 34 H 0.14 0.62 8.14 -51.92 -0.42 0.20 16 35 H 0.13 0.31 8.14 -51.92 -0.42 -0.12 16 36 H 0.13 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.13 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.39 3.70 8.62 -40.82 -0.35 3.35 16 39 H 0.40 6.21 8.72 -40.82 -0.36 5.85 16 40 H 0.14 3.43 5.81 -52.48 -0.30 3.12 16 41 H 0.28 6.11 8.29 -40.82 -0.34 5.77 16 42 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 43 H 0.12 2.54 8.06 -52.48 -0.42 2.12 16 LS Contribution 377.81 15.07 5.69 5.69 Total: -1.00 -37.61 377.81 -10.31 -47.92 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -6.01 Total: 11.72 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -2.51 Total: -4.77 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: 0.13 Total: -55.02 kcal Atomic # 8 Polarization: -31.19 SS G_CDS: -2.02 Total: -33.21 kcal Atomic # 14 Polarization: 17.62 SS G_CDS: -5.03 Total: 12.59 kcal Atomic # 16 Polarization: 15.65 SS G_CDS: -0.58 Total: 15.07 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -37.61 -10.31 -47.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364163759.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.351 kcal (2) G-P(sol) polarization free energy of solvation -37.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds