Wall clock time and date at job start Tue Mar 31 2020 22:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46898 * 2 1 4 4 S 1.81393 * 109.47167 * 119.99875 * 2 1 3 5 5 O 1.42102 * 108.58058 * 70.51128 * 4 2 1 6 6 O 1.42103 * 108.58212 * 299.48987 * 4 2 1 7 7 C 1.81398 * 101.92282 * 185.00003 * 4 2 1 8 8 C 1.52997 * 109.47171 * 179.97438 * 7 4 2 9 9 N 1.46505 * 109.47026 * 179.97438 * 8 7 4 10 10 C 1.34781 * 119.99504 * 180.02562 * 9 8 7 11 11 O 1.21570 * 120.00572 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99170 * 180.02562 * 10 9 8 13 13 C 1.39469 * 119.99739 * 185.05857 * 12 10 9 14 14 C 1.38637 * 119.64820 * 185.36027 * 13 12 10 15 15 C 1.40816 * 118.67318 * 179.72459 * 14 13 12 16 16 C 1.41551 * 121.00070 * 180.25792 * 15 14 13 17 17 H 1.07994 * 120.00494 * 153.82546 * 16 15 14 18 18 C 1.40034 * 119.99494 * 333.82130 * 16 15 14 19 19 N 1.30739 * 120.00376 * 350.11110 * 18 16 15 20 20 Si 1.86804 * 119.99812 * 170.10367 * 18 16 15 21 21 H 1.48504 * 109.46593 * 90.00083 * 20 18 16 22 22 H 1.48491 * 109.47164 * 210.00000 * 20 18 16 23 23 H 1.48504 * 109.47195 * 330.00567 * 20 18 16 24 24 C 1.41162 * 118.00757 * 0.27904 * 15 14 13 25 25 C 1.36589 * 119.12600 * 0.02562 * 24 15 14 26 26 N 1.32074 * 121.26033 * 0.02562 * 25 24 15 27 27 H 1.09000 * 109.47215 * 300.00327 * 1 2 3 28 28 H 1.09002 * 109.47320 * 59.99749 * 1 2 3 29 29 H 1.08998 * 109.47157 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47128 * 240.00318 * 2 1 3 31 31 H 1.09002 * 109.47114 * 60.00235 * 3 2 1 32 32 H 1.09002 * 109.47000 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.46850 * 299.99822 * 3 2 1 34 34 H 1.09003 * 109.46883 * 60.00301 * 7 4 2 35 35 H 1.08999 * 109.47047 * 300.00379 * 7 4 2 36 36 H 1.09003 * 109.46962 * 60.00361 * 8 7 4 37 37 H 1.08999 * 109.47454 * 300.00141 * 8 7 4 38 38 H 0.96996 * 119.99617 * 0.02562 * 9 8 7 39 39 H 0.96998 * 120.00936 * 5.06559 * 12 10 9 40 40 H 1.08002 * 120.66395 * 0.02562 * 14 13 12 41 41 H 0.96994 * 120.00473 * 179.97438 * 19 18 16 42 42 H 1.07997 * 120.43940 * 179.97438 * 24 15 14 43 43 H 1.08004 * 119.37204 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 16 2.1347 -0.8551 1.4811 5 8 1.8619 -2.2431 1.3457 6 8 1.6605 -0.1637 2.6284 7 6 3.9266 -0.6031 1.3540 8 6 4.6209 -1.2689 2.5437 9 7 6.0681 -1.0659 2.4407 10 6 6.8880 -1.5690 3.3848 11 8 6.4267 -2.1916 4.3215 12 7 8.2193 -1.3818 3.2902 13 6 9.0759 -1.9903 4.2074 14 6 10.4322 -1.7049 4.1729 15 6 11.2775 -2.3262 5.1122 16 6 12.6688 -2.0663 5.1250 17 1 13.2309 -2.1789 6.0402 18 6 13.3165 -1.6633 3.9507 19 7 12.6859 -1.7123 2.8064 20 14 15.0816 -1.0554 4.0191 21 1 16.0074 -2.2028 3.8409 22 1 15.3063 -0.0651 2.9357 23 1 15.3341 -0.4154 5.3351 24 6 10.6958 -3.2165 6.0405 25 6 9.3491 -3.4401 5.9932 26 7 8.5859 -2.8406 5.0975 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5137 -0.8899 31 1 1.6767 1.9564 0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 4.1444 0.4650 1.3579 35 1 4.2907 -1.0448 0.4264 36 1 4.4031 -2.3370 2.5403 37 1 4.2567 -0.8268 3.4710 38 1 6.4362 -0.5695 1.6931 39 1 8.5818 -0.8238 2.5845 40 1 10.8317 -1.0160 3.4434 41 1 13.1344 -1.4328 1.9931 42 1 11.3075 -3.7150 6.7778 43 1 8.9000 -4.1208 6.7013 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365071438.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:26 Heat of formation + Delta-G solvation = -91.646310 kcal Electronic energy + Delta-G solvation = -26553.024990 eV Core-core repulsion = 22531.749420 eV Total energy + Delta-G solvation = -4021.275570 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.45435 -39.86823 -38.11918 -37.16519 -36.69033 -36.01162 -35.93442 -35.51906 -32.51428 -32.10435 -30.10082 -28.25257 -27.90553 -25.14333 -23.83977 -23.54110 -22.95021 -21.84611 -19.95573 -19.56482 -19.41916 -18.21774 -17.78346 -17.32926 -17.09016 -16.87241 -16.62629 -16.08889 -16.03091 -15.95204 -15.69138 -15.26962 -15.08231 -14.66160 -14.34926 -14.26617 -14.22829 -14.12064 -13.39534 -13.24724 -13.19709 -13.18272 -13.06565 -12.92479 -12.84829 -12.67655 -12.31856 -12.30358 -12.09305 -11.99200 -11.89210 -11.53150 -11.36986 -11.18167 -11.09086 -10.23832 -9.91159 -9.62758 -8.86167 -8.57051 -6.56628 -1.10937 0.83024 1.01616 1.42902 1.54414 1.55312 1.59101 1.73661 2.20706 2.23093 2.58902 2.85438 2.99523 3.20865 3.36990 3.60487 3.63057 3.76520 3.85250 4.14762 4.22354 4.25784 4.48985 4.62379 4.63898 4.67124 4.72913 4.80878 4.85056 4.90611 4.93457 5.11015 5.13619 5.25679 5.27471 5.30407 5.50080 5.64528 5.83050 5.99075 6.27288 6.56806 6.79999 6.84164 6.96727 7.56654 7.88669 8.30451 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.023528 B = 0.001999 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.810109 B =14004.869630 C =14904.146873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.540 4.540 3 C -0.160 4.160 4 S 2.406 3.594 5 O -0.982 6.982 6 O -0.975 6.975 7 C -0.618 4.618 8 C 0.143 3.857 9 N -0.721 5.721 10 C 0.687 3.313 11 O -0.582 6.582 12 N -0.656 5.656 13 C 0.349 3.651 14 C -0.256 4.256 15 C 0.112 3.888 16 C -0.482 4.482 17 H 0.083 0.917 18 C 0.037 3.963 19 N -0.816 5.816 20 Si 0.990 3.010 21 H -0.265 1.265 22 H -0.263 1.263 23 H -0.260 1.260 24 C -0.294 4.294 25 C 0.112 3.888 26 N -0.581 5.581 27 H 0.068 0.932 28 H 0.107 0.893 29 H 0.067 0.933 30 H 0.172 0.828 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.179 0.821 35 H 0.179 0.821 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.418 0.582 39 H 0.423 0.577 40 H 0.132 0.868 41 H 0.292 0.708 42 H 0.116 0.884 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.784 10.619 -15.294 24.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.654 4.654 3 C -0.218 4.218 4 S 2.593 3.407 5 O -0.979 6.979 6 O -0.972 6.972 7 C -0.747 4.747 8 C 0.017 3.983 9 N -0.382 5.382 10 C 0.386 3.614 11 O -0.457 6.457 12 N -0.306 5.306 13 C 0.122 3.878 14 C -0.282 4.282 15 C 0.104 3.896 16 C -0.512 4.512 17 H 0.101 0.899 18 C -0.180 4.180 19 N -0.442 5.442 20 Si 0.810 3.190 21 H -0.189 1.189 22 H -0.187 1.187 23 H -0.184 1.184 24 C -0.318 4.318 25 C -0.041 4.041 26 N -0.301 5.301 27 H 0.087 0.913 28 H 0.126 0.874 29 H 0.086 0.914 30 H 0.189 0.811 31 H 0.089 0.911 32 H 0.115 0.885 33 H 0.118 0.882 34 H 0.196 0.804 35 H 0.197 0.803 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.256 0.744 39 H 0.261 0.739 40 H 0.150 0.850 41 H 0.103 0.897 42 H 0.134 0.866 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -17.666 9.448 -14.060 24.475 hybrid contribution 2.290 0.769 -0.905 2.579 sum -15.376 10.216 -14.965 23.764 Atomic orbital electron populations 1.21832 0.90082 1.04065 1.05703 1.29801 1.06828 1.10318 1.18429 1.21991 1.03416 0.90683 1.05699 1.08362 0.78389 0.75268 0.78649 1.93552 1.83874 1.32935 1.87528 1.93542 1.79109 1.75772 1.48812 1.30592 1.23223 1.13542 1.07341 1.20746 0.79780 1.00524 0.97239 1.44751 1.05496 1.60575 1.27337 1.16304 0.81399 0.80398 0.83313 1.90992 1.75183 1.44977 1.34522 1.42360 1.04146 1.51732 1.32374 1.18193 0.87179 0.92423 0.90033 1.21591 0.89879 1.08781 1.07950 1.18035 0.94178 0.87727 0.89678 1.19862 0.92894 1.41272 0.97220 0.89893 1.26813 1.05069 0.92200 0.93901 1.69768 1.40268 1.34257 0.99877 0.85079 0.75653 0.78804 0.79416 1.18939 1.18690 1.18380 1.21870 0.96240 1.06623 1.07072 1.21901 0.90614 0.96566 0.95062 1.67295 1.39696 1.14430 1.08711 0.91300 0.87430 0.91377 0.81064 0.91113 0.88484 0.88237 0.80354 0.80319 0.91945 0.91618 0.74372 0.73944 0.85008 0.89725 0.86593 0.83651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 9.19 71.98 0.66 -0.58 16 2 C -0.54 -3.17 3.35 30.60 0.10 -3.07 16 3 C -0.16 -0.41 8.90 71.98 0.64 0.23 16 4 S 2.41 37.88 4.26 -56.49 -0.24 37.64 16 5 O -0.98 -24.34 18.10 -127.37 -2.31 -26.64 16 6 O -0.98 -23.50 18.06 -127.37 -2.30 -25.80 16 7 C -0.62 -6.35 5.31 71.98 0.38 -5.96 16 8 C 0.14 3.35 5.68 86.38 0.49 3.84 16 9 N -0.72 -18.03 5.56 -478.54 -2.66 -20.69 16 10 C 0.69 26.64 8.51 179.05 1.52 28.16 16 11 O -0.58 -28.95 14.64 -3.94 -0.06 -29.01 16 12 N -0.66 -25.65 5.40 -322.37 -1.74 -27.39 16 13 C 0.35 17.36 7.41 132.76 0.98 18.34 16 14 C -0.26 -13.16 8.62 23.00 0.20 -12.96 16 15 C 0.11 6.02 5.60 -21.11 -0.12 5.90 16 16 C -0.48 -24.82 9.14 23.52 0.21 -24.60 16 17 H 0.08 4.09 7.87 -2.91 -0.02 4.07 16 18 C 0.04 1.72 5.31 85.29 0.45 2.17 16 19 N -0.82 -39.07 10.70 21.84 0.23 -38.83 16 20 Si 0.99 35.41 29.57 68.60 2.03 37.44 16 21 H -0.26 -9.25 7.11 99.48 0.71 -8.55 16 22 H -0.26 -8.77 7.11 99.48 0.71 -8.06 16 23 H -0.26 -9.22 7.11 99.48 0.71 -8.51 16 24 C -0.29 -14.83 9.85 22.60 0.22 -14.61 16 25 C 0.11 5.57 11.10 84.27 0.94 6.50 16 26 N -0.58 -31.02 7.90 -194.26 -1.53 -32.55 16 27 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.17 -0.04 8.14 -2.39 -0.02 -0.06 16 31 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.10 -0.22 6.39 -2.39 -0.02 -0.24 16 33 H 0.10 -0.01 8.14 -2.39 -0.02 -0.03 16 34 H 0.18 0.52 6.77 -2.39 -0.02 0.50 16 35 H 0.18 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.42 6.37 8.49 -92.71 -0.79 5.58 16 39 H 0.42 12.76 8.72 -92.71 -0.81 11.95 16 40 H 0.13 6.63 6.11 -2.91 -0.02 6.62 16 41 H 0.29 12.40 8.29 -92.71 -0.77 11.63 16 42 H 0.12 5.32 8.06 -2.91 -0.02 5.30 16 43 H 0.15 6.32 8.06 -2.91 -0.02 6.30 16 Total: -1.00 -87.73 375.51 -2.42 -90.15 By element: Atomic # 1 Polarization: 32.87 SS G_CDS: -0.54 Total: 32.33 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: 6.69 Total: 3.36 kcal Atomic # 7 Polarization: -113.77 SS G_CDS: -5.70 Total: -119.47 kcal Atomic # 8 Polarization: -76.79 SS G_CDS: -4.66 Total: -81.45 kcal Atomic # 14 Polarization: 35.41 SS G_CDS: 2.03 Total: 37.44 kcal Atomic # 16 Polarization: 37.88 SS G_CDS: -0.24 Total: 37.64 kcal Total: -87.73 -2.42 -90.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365071438.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.495 kcal (2) G-P(sol) polarization free energy of solvation -87.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds