Wall clock time and date at job start Tue Mar 31 2020 23:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 109.47512 * 2 1 4 4 C 1.52997 * 109.47030 * 239.99854 * 2 1 3 5 5 N 1.46500 * 109.47386 * 180.02562 * 4 2 1 6 6 C 1.34773 * 120.00269 * 179.97438 * 5 4 2 7 7 O 1.21582 * 120.00071 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99629 * 179.97438 * 6 5 4 9 9 C 1.39950 * 119.99686 * 175.38274 * 8 6 5 10 10 C 1.38866 * 120.07186 * 214.81637 * 9 8 6 11 11 C 1.38116 * 119.93121 * 179.76689 * 10 9 8 12 12 C 1.38276 * 120.06888 * 0.50857 * 11 10 9 13 13 C 1.50701 * 119.92909 * 179.72541 * 12 11 10 14 14 C 1.50700 * 109.46626 * 270.01726 * 13 12 11 15 15 H 1.07994 * 120.00545 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99600 * 179.97438 * 14 13 12 17 17 N 1.31511 * 119.99993 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99747 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47169 * 60.00250 * 18 16 14 20 20 H 1.48498 * 109.47161 * 180.02562 * 18 16 14 21 21 H 1.48508 * 109.47141 * 300.00100 * 18 16 14 22 22 C 1.38278 * 120.14173 * 359.74109 * 12 11 10 23 23 C 1.38110 * 120.07123 * 0.02562 * 22 12 11 24 24 S 1.81400 * 109.47028 * 120.00089 * 2 1 3 25 25 N 1.65602 * 104.44746 * 304.99880 * 24 2 1 26 26 O 1.42093 * 110.54344 * 193.37550 * 24 2 1 27 27 O 1.42107 * 110.54283 * 56.61958 * 24 2 1 28 28 H 1.08998 * 109.47230 * 300.00413 * 1 2 3 29 29 H 1.09005 * 109.46882 * 60.00087 * 1 2 3 30 30 H 1.08992 * 109.47512 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47455 * 300.00151 * 4 2 1 32 32 H 1.09005 * 109.47240 * 60.00278 * 4 2 1 33 33 H 0.97004 * 119.99440 * 359.97438 * 5 4 2 34 34 H 0.96993 * 120.00580 * 355.37643 * 8 6 5 35 35 H 1.08004 * 120.03128 * 359.97438 * 10 9 8 36 36 H 1.07997 * 119.96342 * 180.24872 * 11 10 9 37 37 H 1.08998 * 109.47214 * 30.01275 * 13 12 11 38 38 H 1.08994 * 109.47166 * 150.01802 * 13 12 11 39 39 H 0.96998 * 119.99651 * 180.02562 * 17 16 14 40 40 H 1.07998 * 119.96966 * 180.02562 * 22 12 11 41 41 H 1.08001 * 120.04153 * 179.97438 * 23 22 12 42 42 H 0.96995 * 119.99949 * 359.97438 * 25 24 2 43 43 H 0.96999 * 119.99663 * 179.72398 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5050 -0.7219 -1.2490 6 6 4.1788 -1.3060 -2.2595 7 8 3.5709 -1.8321 -3.1715 8 7 5.5266 -1.3060 -2.2594 9 6 6.2263 -1.9951 -3.2564 10 6 7.4287 -2.6218 -2.9562 11 6 8.1144 -3.3051 -3.9413 12 6 7.6102 -3.3568 -5.2278 13 6 8.3642 -4.0980 -6.3017 14 6 9.3224 -3.1560 -6.9840 15 1 9.3800 -2.1240 -6.6710 16 6 10.1263 -3.6121 -8.0071 17 7 10.0566 -4.8690 -8.3878 18 14 11.3136 -2.4443 -8.8533 19 1 12.2730 -1.9054 -7.8562 20 1 12.0567 -3.1747 -9.9114 21 1 10.5545 -1.3243 -9.4655 22 6 6.4158 -2.7295 -5.5312 23 6 5.7229 -2.0486 -4.5496 24 16 2.1346 -0.8552 1.4811 25 7 1.4052 -0.0656 2.7408 26 8 3.5213 -0.6079 1.6685 27 8 1.6106 -2.1746 1.5440 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.6766 -1.7489 -1.2492 32 1 1.6767 -0.2074 -2.1392 33 1 3.9900 -0.3017 -0.5215 34 1 6.0116 -0.8284 -1.5684 35 1 7.8254 -2.5776 -1.9527 36 1 9.0475 -3.7960 -3.7075 37 1 8.9210 -4.9206 -5.8528 38 1 7.6597 -4.4929 -7.0337 39 1 10.6224 -5.1898 -9.1074 40 1 6.0244 -2.7720 -6.5369 41 1 4.7903 -1.5585 -4.7872 42 1 0.8074 0.6780 2.5661 43 1 1.5729 -0.3491 3.6532 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365082266.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:44 Heat of formation + Delta-G solvation = -80.439734 kcal Electronic energy + Delta-G solvation = -26625.368377 eV Core-core repulsion = 22604.578761 eV Total energy + Delta-G solvation = -4020.789616 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.59242 -38.48135 -37.60968 -36.70127 -36.44042 -34.80601 -34.14114 -33.23460 -32.73352 -30.36594 -30.19193 -27.37079 -26.07458 -23.59977 -23.05320 -22.28791 -21.23453 -20.24632 -19.92450 -18.64003 -18.43570 -17.94628 -17.35607 -16.76192 -16.26575 -16.11764 -15.77626 -15.53207 -14.93310 -14.79482 -14.37278 -14.17747 -13.88106 -13.78598 -13.28057 -13.17066 -12.90956 -12.73500 -12.68713 -12.61598 -12.51960 -12.48573 -12.22627 -11.94896 -11.36905 -11.23027 -11.09092 -11.03126 -10.80672 -10.60472 -10.38325 -10.16206 -9.84613 -9.56844 -9.39631 -9.22573 -8.37546 -8.21296 -7.32225 -5.98976 -4.02860 -0.43615 1.98148 2.13768 2.22667 2.35296 2.99693 3.09725 3.35135 3.39037 3.42350 3.51171 3.56927 4.02554 4.18316 4.29507 4.42895 4.62494 4.67956 4.79969 5.02396 5.14990 5.24912 5.34801 5.41017 5.50341 5.64626 5.91487 5.98262 6.10418 6.17291 6.27115 6.40651 6.51663 6.73380 6.98435 7.03829 7.23634 7.28160 7.57417 7.77482 7.80544 7.93326 7.96852 8.37705 8.42316 9.02255 9.60398 11.10555 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.032426 B = 0.001882 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.302425 B =14877.664804 C =15093.394157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.599 4.599 3 H 0.148 0.852 4 C 0.152 3.848 5 N -0.768 5.768 6 C 0.706 3.294 7 O -0.566 6.566 8 N -0.677 5.677 9 C 0.117 3.883 10 C -0.143 4.143 11 C -0.108 4.108 12 C -0.043 4.043 13 C 0.048 3.952 14 C -0.510 4.510 15 H 0.057 0.943 16 C 0.057 3.943 17 N -0.894 5.894 18 Si 0.896 3.104 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.109 4.109 23 C -0.116 4.116 24 S 2.612 3.388 25 N -1.251 6.251 26 O -0.959 6.959 27 O -0.950 6.950 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.403 0.597 34 H 0.404 0.596 35 H 0.115 0.885 36 H 0.122 0.878 37 H 0.029 0.971 38 H 0.029 0.971 39 H 0.262 0.738 40 H 0.121 0.879 41 H 0.130 0.870 42 H 0.412 0.588 43 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.155 14.375 23.851 34.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.709 4.709 3 H 0.166 0.834 4 C 0.026 3.974 5 N -0.429 5.429 6 C 0.407 3.593 7 O -0.442 6.442 8 N -0.324 5.324 9 C 0.025 3.975 10 C -0.163 4.163 11 C -0.127 4.127 12 C -0.044 4.044 13 C 0.011 3.989 14 C -0.549 4.549 15 H 0.075 0.925 16 C -0.144 4.144 17 N -0.533 5.533 18 Si 0.724 3.276 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.128 4.128 23 C -0.136 4.136 24 S 2.701 3.299 25 N -0.925 5.925 26 O -0.947 6.947 27 O -0.939 6.939 28 H 0.093 0.907 29 H 0.107 0.893 30 H 0.103 0.897 31 H 0.109 0.891 32 H 0.116 0.884 33 H 0.240 0.760 34 H 0.239 0.761 35 H 0.133 0.867 36 H 0.140 0.860 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.072 0.928 40 H 0.139 0.861 41 H 0.147 0.853 42 H 0.238 0.762 43 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -20.973 12.913 22.821 33.577 hybrid contribution 0.635 1.924 0.300 2.048 sum -20.338 14.837 23.121 34.181 Atomic orbital electron populations 1.21611 0.88145 1.05136 1.04933 1.30469 1.08429 1.14453 1.17563 0.83378 1.20957 0.79055 1.01570 0.95803 1.45465 1.06704 1.63754 1.26994 1.15790 0.81860 0.79297 0.82370 1.90959 1.67582 1.49620 1.36032 1.42425 1.04329 1.54712 1.30975 1.17314 0.93765 0.98906 0.87537 1.20747 0.95933 1.00225 0.99404 1.20865 0.99626 0.99629 0.92586 1.20715 0.93298 0.95141 0.95215 1.18345 0.94479 0.94893 0.91171 1.21035 1.20497 0.96209 1.17120 0.92515 1.25022 0.97286 0.95189 0.96932 1.69950 1.39851 1.14416 1.29125 0.86596 0.81034 0.80868 0.79151 1.20210 1.21294 1.20212 1.21004 0.95096 0.97969 0.98725 1.21140 1.00570 1.00979 0.90918 1.05080 0.74538 0.74816 0.75422 1.53153 1.65713 1.50529 1.23112 1.93595 1.31764 1.85434 1.83937 1.93637 1.79929 1.35294 1.85010 0.90717 0.89279 0.89747 0.89148 0.88412 0.75989 0.76106 0.86746 0.85985 0.95318 0.95299 0.92833 0.86116 0.85253 0.76154 0.74861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.24 9.06 37.16 0.34 0.09 16 2 C -0.60 -2.14 3.08 -26.73 -0.08 -2.22 16 3 H 0.15 0.13 8.14 -51.93 -0.42 -0.30 16 4 C 0.15 1.14 5.12 -4.04 -0.02 1.12 16 5 N -0.77 -7.55 5.26 -65.23 -0.34 -7.89 16 6 C 0.71 10.04 8.41 -86.92 -0.73 9.31 16 7 O -0.57 -10.09 13.78 5.29 0.07 -10.02 16 8 N -0.68 -9.34 5.34 -14.22 -0.08 -9.41 16 9 C 0.12 2.04 6.30 -83.68 -0.53 1.51 16 10 C -0.14 -2.45 9.97 -39.39 -0.39 -2.84 16 11 C -0.11 -2.16 9.69 -39.61 -0.38 -2.55 16 12 C -0.04 -0.97 5.07 -104.59 -0.53 -1.50 16 13 C 0.05 1.26 5.10 -29.03 -0.15 1.12 16 14 C -0.51 -14.50 9.09 -34.44 -0.31 -14.81 16 15 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -26.78 13.29 55.43 0.74 -26.04 16 18 Si 0.90 21.81 29.54 -169.99 -5.02 16.78 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 C -0.11 -2.30 9.69 -39.61 -0.38 -2.69 16 23 C -0.12 -2.23 8.70 -39.39 -0.34 -2.58 16 24 S 2.61 16.23 5.10 -107.50 -0.55 15.68 16 25 N -1.25 -2.93 9.26 60.35 0.56 -2.37 16 26 O -0.96 -8.86 16.40 -57.54 -0.94 -9.80 16 27 O -0.95 -9.96 18.09 -57.54 -1.04 -11.00 16 28 H 0.07 -0.07 6.87 -51.93 -0.36 -0.43 16 29 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 30 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.40 3.21 6.63 -40.82 -0.27 2.94 16 34 H 0.40 4.16 8.84 -40.82 -0.36 3.80 16 35 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 36 H 0.12 2.33 8.06 -52.49 -0.42 1.90 16 37 H 0.03 0.78 8.08 -51.93 -0.42 0.37 16 38 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 39 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.12 2.48 8.06 -52.49 -0.42 2.06 16 41 H 0.13 2.47 6.22 -52.49 -0.33 2.14 16 42 H 0.41 -0.35 7.59 -34.47 -0.26 -0.61 16 43 H 0.42 0.76 8.96 -34.47 -0.31 0.45 16 LS Contribution 374.33 15.07 5.64 5.64 Total: -1.00 -39.42 374.33 -10.23 -49.65 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -5.65 Total: 3.28 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: -3.62 Total: -14.50 kcal Atomic # 7 Polarization: -46.59 SS G_CDS: 0.88 Total: -45.71 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: -1.91 Total: -30.82 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: 16.23 SS G_CDS: -0.55 Total: 15.68 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -39.42 -10.23 -49.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365082266.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.789 kcal (2) G-P(sol) polarization free energy of solvation -39.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds