Wall clock time and date at job start Wed Apr 1 2020 00:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 N 1.28706 * 125.90798 * 2 1 4 4 N 1.28584 * 110.36934 * 179.97438 * 3 2 1 5 5 C 1.34020 * 109.05613 * 359.97438 * 4 3 2 6 6 N 1.40541 * 126.79653 * 179.97438 * 5 4 3 7 7 C 1.34771 * 119.99555 * 0.02586 * 6 5 4 8 8 O 1.21599 * 120.00360 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99463 * 179.97438 * 7 6 5 10 10 C 1.40196 * 119.99529 * 179.97438 * 9 7 6 11 11 C 1.40395 * 125.97332 * 0.02562 * 10 9 7 12 12 C 1.35243 * 107.86535 * 179.70197 * 11 10 9 13 13 N 1.34960 * 107.86064 * 0.42509 * 12 11 10 14 14 C 1.46500 * 125.97985 * 179.83521 * 13 12 11 15 15 C 1.50706 * 109.47299 * 124.71356 * 14 13 12 16 16 H 1.07998 * 119.99503 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00434 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99826 * 359.72891 * 17 15 14 19 19 Si 1.86800 * 120.00406 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47364 * 179.72558 * 19 17 15 21 21 H 1.48508 * 109.46883 * 299.72681 * 19 17 15 22 22 H 1.48497 * 109.46870 * 59.72491 * 19 17 15 23 23 N 1.31213 * 125.97049 * 179.97438 * 10 9 7 24 24 C 1.35884 * 106.41350 * 0.22479 * 5 4 3 25 25 C 1.50703 * 127.01064 * 179.73576 * 24 5 4 26 26 F 1.39897 * 109.46771 * 120.02847 * 25 24 5 27 27 F 1.39900 * 109.46759 * 240.02461 * 25 24 5 28 28 H 1.09006 * 109.46595 * 89.97848 * 1 2 3 29 29 H 1.09001 * 109.47174 * 209.97866 * 1 2 3 30 30 H 1.08995 * 109.47007 * 329.98502 * 1 2 3 31 31 H 0.97002 * 120.00165 * 180.02562 * 6 5 4 32 32 H 0.97001 * 120.00826 * 359.97438 * 9 7 6 33 33 H 1.07999 * 126.07114 * 359.97169 * 11 10 9 34 34 H 1.08001 * 126.07266 * 180.29316 * 12 11 10 35 35 H 1.09004 * 109.47078 * 4.72118 * 14 13 12 36 36 H 1.08993 * 109.47364 * 244.71890 * 14 13 12 37 37 H 0.97000 * 120.00236 * 0.27947 * 18 17 15 38 38 H 1.08996 * 109.47316 * 0.03104 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2199 1.0425 0.0000 4 7 3.4588 0.6980 0.0005 5 6 3.5410 -0.6397 0.0015 6 7 4.7159 -1.4108 0.0018 7 6 5.9197 -0.8048 0.0016 8 8 5.9892 0.4092 0.0008 9 7 7.0464 -1.5443 0.0025 10 6 8.2986 -0.9139 0.0018 11 6 8.5243 0.4718 0.0007 12 6 9.8614 0.6745 0.0070 13 7 10.4631 -0.5335 0.0023 14 6 11.9080 -0.7754 0.0030 15 6 12.2685 -1.6616 1.1675 16 1 11.4983 -2.0101 1.8394 17 6 13.5816 -2.0274 1.3749 18 7 14.5188 -1.6072 0.5535 19 14 14.0283 -3.1264 2.8178 20 1 15.4921 -3.3764 2.8151 21 1 13.6424 -2.4585 4.0868 22 1 13.3053 -4.4180 2.6985 23 7 9.4645 -1.5158 0.0029 24 6 2.2635 -1.1029 -0.0036 25 6 1.8210 -2.5434 -0.0104 26 9 1.0501 -2.7997 1.1286 27 9 1.0570 -2.7911 -1.1559 28 1 -0.3633 0.0004 -1.0278 29 1 -0.3633 -0.8902 0.5135 30 1 -0.3633 0.8898 0.5140 31 1 4.6605 -2.3793 0.0021 32 1 6.9911 -2.5128 0.0036 33 1 7.7649 1.2398 -0.0001 34 1 10.3593 1.6328 0.0124 35 1 12.4353 0.1744 0.0926 36 1 12.1951 -1.2640 -0.9280 37 1 14.2869 -1.0367 -0.1959 38 1 2.6965 -3.1926 -0.0101 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365088441.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:00:57 Heat of formation + Delta-G solvation = 75.205946 kcal Electronic energy + Delta-G solvation = -28408.505895 eV Core-core repulsion = 23769.377603 eV Total energy + Delta-G solvation = -4639.128292 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.115 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.75343 -47.73697 -43.77925 -40.92394 -39.80625 -36.07185 -34.88149 -34.70890 -33.68535 -31.85110 -30.69120 -29.40429 -28.47621 -26.88903 -26.30028 -24.15244 -22.91597 -22.16621 -21.61061 -20.57005 -20.02449 -18.75381 -18.34913 -18.15817 -17.97988 -17.49032 -17.19204 -17.02916 -16.54022 -15.73701 -15.63560 -15.01454 -14.63382 -14.59463 -14.18588 -14.08836 -13.85369 -13.78156 -13.72316 -13.67110 -13.20286 -12.91748 -12.50965 -12.35114 -11.93513 -11.87557 -11.67133 -11.33434 -11.16784 -10.82556 -10.52235 -10.51332 -10.22308 -10.16965 -9.81635 -9.07289 -8.96140 -8.58858 -8.23453 -7.53868 -6.58643 -4.32792 0.73165 1.45198 1.93172 1.98805 2.57228 2.79004 3.00077 3.17299 3.33885 3.37401 3.38640 3.55524 3.57944 3.69009 3.94821 4.01544 4.19847 4.33578 4.40445 4.44364 4.70071 4.75938 5.02962 5.14917 5.38223 5.65316 5.81413 5.90166 6.04063 6.26526 6.42050 6.59755 6.69926 6.76861 7.29848 7.52554 7.70849 7.82075 7.98904 8.30598 8.33257 8.51282 8.60756 9.35365 10.78893 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.022589 B = 0.002063 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.231195 B =13566.981601 C =14319.131791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.262 5.262 3 N -0.038 5.038 4 N -0.238 5.238 5 C 0.298 3.702 6 N -0.649 5.649 7 C 0.709 3.291 8 O -0.510 6.510 9 N -0.635 5.635 10 C 0.275 3.725 11 C -0.282 4.282 12 C 0.052 3.948 13 N -0.317 5.317 14 C 0.249 3.751 15 C -0.608 4.608 16 H 0.063 0.937 17 C 0.022 3.978 18 N -0.904 5.904 19 Si 1.077 2.923 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.285 1.285 23 N -0.301 5.301 24 C -0.157 4.157 25 C 0.362 3.638 26 F -0.191 7.191 27 F -0.190 7.190 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.415 0.585 32 H 0.409 0.591 33 H 0.164 0.836 34 H 0.169 0.831 35 H 0.047 0.953 36 H 0.035 0.965 37 H 0.267 0.733 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.177 -2.150 -2.178 30.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.060 5.060 3 N -0.019 5.019 4 N -0.107 5.107 5 C 0.064 3.936 6 N -0.302 5.302 7 C 0.407 3.593 8 O -0.378 6.378 9 N -0.286 5.286 10 C 0.021 3.979 11 C -0.313 4.313 12 C -0.097 4.097 13 N -0.099 5.099 14 C 0.131 3.869 15 C -0.646 4.646 16 H 0.082 0.918 17 C -0.182 4.182 18 N -0.540 5.540 19 Si 0.904 3.096 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.212 1.212 23 N -0.132 5.132 24 C -0.291 4.291 25 C 0.306 3.694 26 F -0.172 7.172 27 F -0.171 7.171 28 H 0.117 0.883 29 H 0.120 0.880 30 H 0.129 0.871 31 H 0.252 0.748 32 H 0.244 0.756 33 H 0.182 0.818 34 H 0.186 0.814 35 H 0.064 0.936 36 H 0.053 0.947 37 H 0.077 0.923 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -28.007 -1.374 -1.436 28.078 hybrid contribution -2.070 -0.660 -0.780 2.309 sum -30.077 -2.034 -2.216 30.227 Atomic orbital electron populations 1.22473 0.71614 1.06596 1.05707 1.47063 1.09464 1.03215 1.46286 1.78448 0.95872 1.11364 1.16197 1.75679 1.07988 1.08365 1.18669 1.17928 0.84195 0.89931 1.01553 1.41834 1.01589 1.08907 1.77920 1.15467 0.79280 0.85551 0.78982 1.91034 1.84082 1.10570 1.52134 1.41162 1.01557 1.09512 1.76340 1.18688 0.84243 0.91414 1.03567 1.21548 0.95489 0.94854 1.19425 1.22568 0.93304 0.91459 1.02390 1.48780 1.07038 1.01848 1.52223 1.19769 0.69411 0.98451 0.99254 1.22096 0.96344 1.33777 1.12375 0.91845 1.25924 0.92000 0.98169 1.02139 1.70851 1.35368 1.32779 1.14987 0.83418 0.76229 0.75648 0.74323 1.20535 1.21235 1.21162 1.77339 0.93526 1.14208 1.28114 1.21547 0.90844 0.91492 1.25204 1.19482 0.88778 0.89397 0.71784 1.93058 1.78159 1.94817 1.51162 1.93068 1.78502 1.94988 1.50587 0.88302 0.88022 0.87137 0.74776 0.75598 0.81847 0.81390 0.93552 0.94744 0.92259 0.84860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.28 11.23 59.85 0.67 0.95 16 2 N -0.26 -2.25 3.77 -63.44 -0.24 -2.49 16 3 N -0.04 -0.47 13.15 60.35 0.79 0.32 16 4 N -0.24 -3.52 10.72 31.10 0.33 -3.18 16 5 C 0.30 3.38 7.76 -153.28 -1.19 2.19 16 6 N -0.65 -6.33 5.47 -15.90 -0.09 -6.42 16 7 C 0.71 10.17 8.50 -86.92 -0.74 9.43 16 8 O -0.51 -9.41 12.24 5.28 0.06 -9.35 16 9 N -0.64 -9.19 5.46 -15.51 -0.08 -9.28 16 10 C 0.27 5.38 8.11 -154.36 -1.25 4.13 16 11 C -0.28 -5.59 9.60 -39.84 -0.38 -5.97 16 12 C 0.05 1.05 11.44 -17.24 -0.20 0.85 16 13 N -0.32 -7.33 3.67 -62.56 -0.23 -7.56 16 14 C 0.25 6.25 5.57 -5.19 -0.03 6.22 16 15 C -0.61 -16.94 9.24 -34.44 -0.32 -17.26 16 16 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 17 C 0.02 0.62 5.46 -17.82 -0.10 0.52 16 18 N -0.90 -26.20 13.65 55.43 0.76 -25.44 16 19 Si 1.08 24.73 29.90 -169.99 -5.08 19.65 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 23 N -0.30 -6.80 12.42 31.44 0.39 -6.41 16 24 C -0.16 -1.31 6.48 -81.51 -0.53 -1.83 16 25 C 0.36 1.83 5.38 36.01 0.19 2.03 16 26 F -0.19 -1.14 16.49 2.25 0.04 -1.10 16 27 F -0.19 -1.14 17.32 2.25 0.04 -1.10 16 28 H 0.10 0.22 8.14 -51.93 -0.42 -0.21 16 29 H 0.10 0.25 7.11 -51.93 -0.37 -0.12 16 30 H 0.11 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.41 1.97 7.83 -40.82 -0.32 1.65 16 32 H 0.41 4.38 8.84 -40.82 -0.36 4.02 16 33 H 0.16 3.22 5.91 -52.49 -0.31 2.91 16 34 H 0.17 2.75 8.06 -52.49 -0.42 2.33 16 35 H 0.05 1.13 7.94 -51.93 -0.41 0.71 16 36 H 0.03 0.90 8.00 -51.93 -0.42 0.48 16 37 H 0.27 7.57 7.22 -40.82 -0.29 7.27 16 38 H 0.13 0.20 7.13 -51.93 -0.37 -0.17 16 LS Contribution 346.48 15.07 5.22 5.22 Total: -1.00 -38.29 346.48 -5.28 -43.57 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -3.33 Total: 2.31 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: -3.87 Total: 1.27 kcal Atomic # 7 Polarization: -62.09 SS G_CDS: 1.63 Total: -60.46 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.06 Total: -9.35 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.08 Total: -2.21 kcal Atomic # 14 Polarization: 24.73 SS G_CDS: -5.08 Total: 19.65 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -38.29 -5.28 -43.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365088441.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.778 kcal (2) G-P(sol) polarization free energy of solvation -38.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds