Wall clock time and date at job start Tue Mar 31 2020 23:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 S 1.81401 * 109.47373 * 2 1 4 4 O 1.42094 * 108.57882 * 65.51135 * 3 2 1 5 5 O 1.42102 * 108.57792 * 294.49080 * 3 2 1 6 6 C 1.81393 * 101.92589 * 180.02562 * 3 2 1 7 7 C 1.52995 * 109.47466 * 179.97438 * 6 3 2 8 8 N 1.46501 * 109.47575 * 180.02562 * 7 6 3 9 9 C 1.46500 * 119.99738 * 270.00292 * 8 7 6 10 10 C 1.34774 * 119.99963 * 89.99638 * 8 7 6 11 11 O 1.21582 * 120.00062 * 0.02562 * 10 8 7 12 12 N 1.34775 * 119.99899 * 179.97438 * 10 8 7 13 13 C 1.39463 * 120.00180 * 184.75549 * 12 10 8 14 14 C 1.38645 * 119.65008 * 185.73153 * 13 12 10 15 15 C 1.40820 * 118.67207 * 179.72541 * 14 13 12 16 16 C 1.41546 * 120.99389 * 180.24927 * 15 14 13 17 17 H 1.07998 * 119.99533 * 146.73872 * 16 15 14 18 18 C 1.40031 * 120.00453 * 326.73872 * 16 15 14 19 19 N 1.30742 * 120.00185 * 168.15308 * 18 16 15 20 20 Si 1.86800 * 119.99702 * 348.15964 * 18 16 15 21 21 H 1.48502 * 109.47246 * 92.63026 * 20 18 16 22 22 H 1.48503 * 109.46890 * 212.62748 * 20 18 16 23 23 H 1.48498 * 109.47206 * 332.62669 * 20 18 16 24 24 C 1.41166 * 118.00672 * 0.27626 * 15 14 13 25 25 C 1.36586 * 119.12578 * 0.02562 * 24 15 14 26 26 N 1.32067 * 121.26133 * 0.02562 * 25 24 15 27 27 H 1.08994 * 109.47075 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47109 * 299.99933 * 1 2 3 29 29 H 1.09001 * 109.47287 * 59.99618 * 1 2 3 30 30 H 1.08999 * 109.47109 * 240.00067 * 2 1 3 31 31 H 1.08998 * 109.47485 * 119.99887 * 2 1 3 32 32 H 1.09009 * 109.47153 * 59.99918 * 6 3 2 33 33 H 1.09002 * 109.47162 * 300.00072 * 6 3 2 34 34 H 1.09001 * 109.47110 * 59.99681 * 7 6 3 35 35 H 1.09002 * 109.47109 * 300.00252 * 7 6 3 36 36 H 1.09001 * 109.47056 * 269.99357 * 9 8 7 37 37 H 1.08995 * 109.47219 * 29.99892 * 9 8 7 38 38 H 1.09005 * 109.46939 * 149.99830 * 9 8 7 39 39 H 0.96996 * 120.00439 * 4.76451 * 12 10 8 40 40 H 1.07996 * 120.65966 * 359.97438 * 14 13 12 41 41 H 0.96994 * 120.00209 * 179.97438 * 19 18 16 42 42 H 1.08003 * 120.43307 * 179.97438 * 24 15 14 43 43 H 1.08005 * 119.36853 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.7592 2.3232 1.2257 5 8 1.7592 2.3232 -1.2258 6 6 3.9329 1.4720 -0.0008 7 6 4.6280 2.8349 -0.0015 8 7 6.0803 2.6425 -0.0028 9 6 6.8075 2.5463 1.2653 10 6 6.7473 2.5538 -1.1706 11 8 6.1438 2.6340 -2.2230 12 7 8.0835 2.3773 -1.1717 13 6 8.7868 2.3848 -2.3759 14 6 10.1404 2.0846 -2.3816 15 6 10.8291 2.0925 -3.6098 16 6 12.2101 1.7883 -3.6731 17 1 12.6123 1.2822 -4.5382 18 6 13.0546 2.1435 -2.6141 19 7 14.2708 1.6668 -2.5596 20 14 12.4434 3.2985 -1.2792 21 1 11.8760 2.5048 -0.1596 22 1 13.5749 4.1204 -0.7796 23 1 11.3936 4.1884 -1.8370 24 6 10.1012 2.4134 -4.7759 25 6 8.7702 2.7018 -4.6705 26 7 8.1561 2.6860 -3.5015 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 4.2252 0.9149 -0.8910 33 1 4.2260 0.9147 0.8890 34 1 4.3357 3.3923 0.8884 35 1 4.3349 3.3918 -0.8915 36 1 7.1230 3.5413 1.5796 37 1 6.1567 2.1144 2.0255 38 1 7.6841 1.9118 1.1343 39 1 8.5560 2.2450 -0.3350 40 1 10.6553 1.8455 -1.4628 41 1 14.8559 1.9131 -1.8263 42 1 10.5904 2.4315 -5.7386 43 1 8.2094 2.9475 -5.5603 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365252500.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:41 Heat of formation + Delta-G solvation = -46.183435 kcal Electronic energy + Delta-G solvation = -27269.824212 eV Core-core repulsion = 23250.520061 eV Total energy + Delta-G solvation = -4019.304152 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -40.34033 -38.54175 -37.25474 -36.34135 -35.88584 -34.57012 -33.87221 -33.57624 -31.78818 -31.30304 -28.84228 -26.96308 -26.05562 -25.05428 -23.63076 -22.39862 -21.33004 -19.62192 -19.17214 -18.34648 -17.78279 -17.37812 -16.61164 -16.38487 -16.29751 -15.70026 -15.32928 -15.05496 -14.90603 -14.66679 -14.37462 -14.09300 -13.72554 -13.61560 -13.50421 -13.13042 -13.00038 -12.99693 -12.82283 -12.62387 -12.57017 -12.35132 -12.26128 -11.98979 -11.68554 -11.56655 -11.25563 -11.03481 -10.87632 -10.78595 -10.70657 -10.12412 -9.97106 -9.77105 -9.41983 -8.81384 -8.23070 -7.95963 -7.31565 -7.05708 -4.76512 -0.38896 2.33311 2.40110 2.58666 2.60070 2.96016 3.08445 3.20686 3.25738 3.55218 3.67162 3.85632 3.93550 4.19521 4.24383 4.32806 4.51115 4.56611 4.76440 4.82723 4.93596 5.14105 5.17017 5.23186 5.24071 5.35236 5.42622 5.50109 5.56314 5.63984 6.12136 6.28424 6.34668 6.38148 6.51609 6.82256 6.95329 7.11127 7.23017 7.60643 7.83446 8.04179 8.19288 8.39808 8.62895 8.83697 9.41443 9.96103 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.022818 B = 0.002486 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.833477 B =11260.635519 C =11898.705844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.614 4.614 3 S 2.421 3.579 4 O -0.940 6.940 5 O -0.929 6.929 6 C -0.634 4.634 7 C 0.150 3.850 8 N -0.633 5.633 9 C 0.074 3.926 10 C 0.694 3.306 11 O -0.521 6.521 12 N -0.670 5.670 13 C 0.383 3.617 14 C -0.318 4.318 15 C 0.130 3.870 16 C -0.440 4.440 17 H 0.096 0.904 18 C 0.085 3.915 19 N -0.806 5.806 20 Si 0.915 3.085 21 H -0.272 1.272 22 H -0.290 1.290 23 H -0.245 1.245 24 C -0.268 4.268 25 C 0.129 3.871 26 N -0.552 5.552 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.134 0.866 31 H 0.131 0.869 32 H 0.140 0.860 33 H 0.132 0.868 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.404 0.596 40 H 0.108 0.892 41 H 0.287 0.713 42 H 0.111 0.889 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.356 -3.000 11.962 22.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.743 4.743 3 S 2.601 3.399 4 O -0.937 6.937 5 O -0.926 6.926 6 C -0.764 4.764 7 C 0.025 3.975 8 N -0.373 5.373 9 C -0.070 4.070 10 C 0.394 3.606 11 O -0.391 6.391 12 N -0.320 5.320 13 C 0.155 3.845 14 C -0.344 4.344 15 C 0.122 3.878 16 C -0.471 4.471 17 H 0.114 0.886 18 C -0.135 4.135 19 N -0.431 5.431 20 Si 0.742 3.258 21 H -0.198 1.198 22 H -0.217 1.217 23 H -0.168 1.168 24 C -0.291 4.291 25 C -0.022 4.022 26 N -0.272 5.272 27 H 0.099 0.901 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.152 0.848 31 H 0.149 0.851 32 H 0.158 0.842 33 H 0.150 0.850 34 H 0.110 0.890 35 H 0.121 0.879 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.241 0.759 40 H 0.126 0.874 41 H 0.097 0.903 42 H 0.129 0.871 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -19.952 -1.970 11.290 23.010 hybrid contribution 1.824 -0.895 1.233 2.377 sum -18.128 -2.866 12.524 22.219 Atomic orbital electron populations 1.21514 0.90316 1.04880 1.03798 1.30208 1.07541 1.24920 1.11648 1.08059 0.77997 0.78303 0.75492 1.93583 1.81146 1.73196 1.45739 1.93628 1.80828 1.72865 1.45250 1.30852 1.24626 1.08800 1.12139 1.20846 0.79669 0.92149 1.04883 1.47052 1.06557 1.78482 1.05209 1.21803 0.97222 1.02044 0.85891 1.16019 0.81924 0.78844 0.83772 1.91040 1.66195 1.53103 1.28721 1.42798 1.06080 1.74508 1.08592 1.17780 0.87384 0.94316 0.85059 1.21223 0.92687 1.20859 0.99618 1.17715 0.93703 0.86290 0.90127 1.19478 0.90592 1.32774 1.04247 0.88601 1.26150 0.94496 0.95047 0.97799 1.69607 1.07364 1.35505 1.30599 0.86244 0.78704 0.80866 0.79959 1.19784 1.21749 1.16845 1.21740 0.95762 1.12503 0.99127 1.21644 0.91783 0.95020 0.93764 1.67283 1.38587 1.24176 0.97105 0.90079 0.90842 0.90688 0.84807 0.85072 0.84171 0.85010 0.88990 0.87902 0.92164 0.90633 0.91322 0.75937 0.87423 0.90253 0.87081 0.85231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.92 37.15 0.37 -0.47 16 2 C -0.61 -3.24 6.53 37.15 0.24 -2.99 16 3 S 2.42 20.47 4.72 -107.50 -0.51 19.96 16 4 O -0.94 -10.20 18.10 -57.83 -1.05 -11.24 16 5 O -0.93 -11.92 18.10 -57.83 -1.05 -12.96 16 6 C -0.63 -5.22 6.13 37.16 0.23 -4.99 16 7 C 0.15 1.67 5.41 -4.04 -0.02 1.64 16 8 N -0.63 -8.11 2.87 -187.35 -0.54 -8.65 16 9 C 0.07 0.64 10.24 59.85 0.61 1.25 16 10 C 0.69 12.52 8.23 -86.92 -0.72 11.81 16 11 O -0.52 -11.51 14.22 5.29 0.08 -11.43 16 12 N -0.67 -12.38 5.27 -15.86 -0.08 -12.46 16 13 C 0.38 8.71 7.40 -154.67 -1.15 7.57 16 14 C -0.32 -7.44 6.97 -38.46 -0.27 -7.71 16 15 C 0.13 3.23 5.09 -106.55 -0.54 2.69 16 16 C -0.44 -11.46 9.66 -37.65 -0.36 -11.82 16 17 H 0.10 2.60 8.06 -52.49 -0.42 2.18 16 18 C 0.08 2.13 5.48 -17.34 -0.10 2.03 16 19 N -0.81 -20.58 13.92 55.55 0.77 -19.81 16 20 Si 0.92 19.80 24.49 -169.99 -4.16 15.64 16 21 H -0.27 -5.45 6.71 56.52 0.38 -5.07 16 22 H -0.29 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.25 -5.58 6.71 56.52 0.38 -5.20 16 24 C -0.27 -6.18 9.85 -39.07 -0.38 -6.56 16 25 C 0.13 2.91 11.10 -18.05 -0.20 2.71 16 26 N -0.55 -13.34 7.90 -12.75 -0.10 -13.44 16 27 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.13 0.54 8.14 -51.92 -0.42 0.12 16 31 H 0.13 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.14 1.27 8.14 -51.92 -0.42 0.84 16 33 H 0.13 0.66 8.14 -51.92 -0.42 0.24 16 34 H 0.09 0.76 8.07 -51.93 -0.42 0.34 16 35 H 0.10 1.36 7.42 -51.93 -0.39 0.97 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.44 8.07 -51.93 -0.42 0.02 16 38 H 0.07 0.56 6.30 -51.93 -0.33 0.23 16 39 H 0.40 6.01 6.39 -40.82 -0.26 5.75 16 40 H 0.11 2.40 4.78 -52.49 -0.25 2.15 16 41 H 0.29 6.61 8.29 -40.82 -0.34 6.27 16 42 H 0.11 2.35 8.06 -52.48 -0.42 1.93 16 43 H 0.13 2.52 8.06 -52.48 -0.42 2.09 16 LS Contribution 370.76 15.07 5.59 5.59 Total: -1.00 -37.32 370.76 -9.23 -46.54 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -5.89 Total: 7.11 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -2.29 Total: -4.84 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: 0.05 Total: -54.36 kcal Atomic # 8 Polarization: -33.62 SS G_CDS: -2.02 Total: -35.64 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -4.16 Total: 15.64 kcal Atomic # 16 Polarization: 20.47 SS G_CDS: -0.51 Total: 19.96 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -37.32 -9.23 -46.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365252500.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.360 kcal (2) G-P(sol) polarization free energy of solvation -37.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds