Wall clock time and date at job start Tue Mar 31 2020 23:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 S 1.81401 * 109.47373 * 2 1 4 4 O 1.42094 * 108.57882 * 65.51135 * 3 2 1 5 5 O 1.42102 * 108.57792 * 294.49080 * 3 2 1 6 6 C 1.81393 * 101.92589 * 180.02562 * 3 2 1 7 7 C 1.52995 * 109.47466 * 179.97438 * 6 3 2 8 8 N 1.46501 * 109.47575 * 180.02562 * 7 6 3 9 9 C 1.46500 * 119.99738 * 270.00292 * 8 7 6 10 10 C 1.34774 * 119.99963 * 89.99638 * 8 7 6 11 11 O 1.21582 * 120.00062 * 0.02562 * 10 8 7 12 12 N 1.34775 * 119.99899 * 179.97438 * 10 8 7 13 13 C 1.39463 * 120.00180 * 184.75549 * 12 10 8 14 14 C 1.38645 * 119.65008 * 185.73153 * 13 12 10 15 15 C 1.40820 * 118.67207 * 179.72541 * 14 13 12 16 16 C 1.41546 * 120.99389 * 180.24927 * 15 14 13 17 17 H 1.07998 * 119.99533 * 146.73872 * 16 15 14 18 18 C 1.40031 * 120.00453 * 326.73872 * 16 15 14 19 19 N 1.30742 * 120.00185 * 168.15308 * 18 16 15 20 20 Si 1.86800 * 119.99702 * 348.15964 * 18 16 15 21 21 H 1.48502 * 109.47246 * 92.63026 * 20 18 16 22 22 H 1.48503 * 109.46890 * 212.62748 * 20 18 16 23 23 H 1.48498 * 109.47206 * 332.62669 * 20 18 16 24 24 C 1.41166 * 118.00672 * 0.27626 * 15 14 13 25 25 C 1.36586 * 119.12578 * 0.02562 * 24 15 14 26 26 N 1.32067 * 121.26133 * 0.02562 * 25 24 15 27 27 H 1.08994 * 109.47075 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47109 * 299.99933 * 1 2 3 29 29 H 1.09001 * 109.47287 * 59.99618 * 1 2 3 30 30 H 1.08999 * 109.47109 * 240.00067 * 2 1 3 31 31 H 1.08998 * 109.47485 * 119.99887 * 2 1 3 32 32 H 1.09009 * 109.47153 * 59.99918 * 6 3 2 33 33 H 1.09002 * 109.47162 * 300.00072 * 6 3 2 34 34 H 1.09001 * 109.47110 * 59.99681 * 7 6 3 35 35 H 1.09002 * 109.47109 * 300.00252 * 7 6 3 36 36 H 1.09001 * 109.47056 * 269.99357 * 9 8 7 37 37 H 1.08995 * 109.47219 * 29.99892 * 9 8 7 38 38 H 1.09005 * 109.46939 * 149.99830 * 9 8 7 39 39 H 0.96996 * 120.00439 * 4.76451 * 12 10 8 40 40 H 1.07996 * 120.65966 * 359.97438 * 14 13 12 41 41 H 0.96994 * 120.00209 * 179.97438 * 19 18 16 42 42 H 1.08003 * 120.43307 * 179.97438 * 24 15 14 43 43 H 1.08005 * 119.36853 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.7592 2.3232 1.2257 5 8 1.7592 2.3232 -1.2258 6 6 3.9329 1.4720 -0.0008 7 6 4.6280 2.8349 -0.0015 8 7 6.0803 2.6425 -0.0028 9 6 6.8075 2.5463 1.2653 10 6 6.7473 2.5538 -1.1706 11 8 6.1438 2.6340 -2.2230 12 7 8.0835 2.3773 -1.1717 13 6 8.7868 2.3848 -2.3759 14 6 10.1404 2.0846 -2.3816 15 6 10.8291 2.0925 -3.6098 16 6 12.2101 1.7883 -3.6731 17 1 12.6123 1.2822 -4.5382 18 6 13.0546 2.1435 -2.6141 19 7 14.2708 1.6668 -2.5596 20 14 12.4434 3.2985 -1.2792 21 1 11.8760 2.5048 -0.1596 22 1 13.5749 4.1204 -0.7796 23 1 11.3936 4.1884 -1.8370 24 6 10.1012 2.4134 -4.7759 25 6 8.7702 2.7018 -4.6705 26 7 8.1561 2.6860 -3.5015 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 4.2252 0.9149 -0.8910 33 1 4.2260 0.9147 0.8890 34 1 4.3357 3.3923 0.8884 35 1 4.3349 3.3918 -0.8915 36 1 7.1230 3.5413 1.5796 37 1 6.1567 2.1144 2.0255 38 1 7.6841 1.9118 1.1343 39 1 8.5560 2.2450 -0.3350 40 1 10.6553 1.8455 -1.4628 41 1 14.8559 1.9131 -1.8263 42 1 10.5904 2.4315 -5.7386 43 1 8.2094 2.9475 -5.5603 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365252500.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:40 Heat of formation + Delta-G solvation = -74.491100 kcal Electronic energy + Delta-G solvation = -27271.051725 eV Core-core repulsion = 23250.520061 eV Total energy + Delta-G solvation = -4020.531664 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.75103 -40.17783 -38.02973 -37.18677 -36.99163 -36.16901 -35.64992 -34.01027 -33.22057 -32.67391 -30.44948 -27.95434 -27.74285 -25.86419 -24.42065 -24.18459 -22.81313 -21.10910 -19.85546 -19.63363 -19.43890 -18.15180 -17.91027 -17.32638 -17.23656 -17.17908 -16.53568 -16.40103 -16.17277 -16.03190 -15.48360 -15.13799 -14.94427 -14.84226 -14.77795 -14.57013 -14.12740 -14.04199 -13.63526 -13.46998 -13.34191 -13.31649 -13.16078 -13.06064 -12.77426 -12.65043 -12.59937 -12.43298 -12.33315 -11.99169 -11.86414 -11.59634 -11.43007 -11.29111 -11.15467 -10.11950 -9.85759 -9.73403 -9.00605 -8.93241 -6.72955 -1.02883 0.57452 0.75096 1.22634 1.38972 1.40758 1.48100 1.80693 2.08728 2.10602 2.59367 2.70864 2.80066 3.07082 3.49989 3.58803 3.68737 3.76262 3.91405 3.98431 4.18104 4.25062 4.37312 4.41047 4.48306 4.55782 4.59411 4.64771 4.74306 4.74660 4.82796 4.85300 4.87283 5.12008 5.12472 5.25182 5.38963 5.49739 5.62099 5.75190 6.08180 6.25164 6.50985 6.68612 6.70117 7.41190 7.70850 8.13223 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.022818 B = 0.002486 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.833477 B =11260.635519 C =11898.705844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.592 4.592 3 S 2.423 3.577 4 O -0.967 6.967 5 O -0.985 6.985 6 C -0.626 4.626 7 C 0.134 3.866 8 N -0.621 5.621 9 C 0.061 3.939 10 C 0.688 3.312 11 O -0.570 6.570 12 N -0.662 5.662 13 C 0.382 3.618 14 C -0.322 4.322 15 C 0.115 3.885 16 C -0.470 4.470 17 H 0.066 0.934 18 C 0.051 3.949 19 N -0.839 5.839 20 Si 0.966 3.034 21 H -0.240 1.240 22 H -0.278 1.278 23 H -0.264 1.264 24 C -0.278 4.278 25 C 0.129 3.871 26 N -0.572 5.572 27 H 0.103 0.897 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.151 0.849 31 H 0.167 0.833 32 H 0.132 0.868 33 H 0.173 0.827 34 H 0.123 0.877 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.112 0.888 38 H 0.075 0.925 39 H 0.421 0.579 40 H 0.120 0.880 41 H 0.298 0.702 42 H 0.122 0.878 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.621 -3.876 15.120 25.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.725 4.725 3 S 2.609 3.391 4 O -0.965 6.965 5 O -0.982 6.982 6 C -0.756 4.756 7 C 0.009 3.991 8 N -0.360 5.360 9 C -0.081 4.081 10 C 0.389 3.611 11 O -0.444 6.444 12 N -0.314 5.314 13 C 0.152 3.848 14 C -0.347 4.347 15 C 0.107 3.893 16 C -0.501 4.501 17 H 0.084 0.916 18 C -0.166 4.166 19 N -0.465 5.465 20 Si 0.789 3.211 21 H -0.165 1.165 22 H -0.204 1.204 23 H -0.189 1.189 24 C -0.302 4.302 25 C -0.023 4.023 26 N -0.292 5.292 27 H 0.121 0.879 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.169 0.831 31 H 0.185 0.815 32 H 0.150 0.850 33 H 0.191 0.809 34 H 0.141 0.859 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.131 0.869 38 H 0.094 0.906 39 H 0.261 0.739 40 H 0.138 0.862 41 H 0.108 0.892 42 H 0.140 0.860 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -21.211 -2.826 14.529 25.865 hybrid contribution 2.085 -0.682 0.245 2.208 sum -19.126 -3.509 14.774 24.421 Atomic orbital electron populations 1.21700 0.90617 1.06186 1.03576 1.30032 1.07165 1.20923 1.14354 1.07741 0.77845 0.79792 0.73729 1.93540 1.81556 1.75234 1.46128 1.93561 1.81786 1.75598 1.47265 1.30741 1.23727 1.07385 1.13773 1.21101 0.78902 0.94079 1.04968 1.47050 1.07180 1.76736 1.04987 1.22199 0.98032 1.03391 0.84460 1.16233 0.81578 0.78546 0.84727 1.91006 1.67013 1.55219 1.31120 1.42678 1.06487 1.74254 1.07953 1.17979 0.87558 0.93250 0.86050 1.21297 0.93083 1.20803 0.99533 1.17904 0.93431 0.86438 0.91534 1.19446 0.91695 1.34693 1.04281 0.91575 1.26823 0.94436 0.95905 0.99409 1.69625 1.08288 1.36704 1.31906 0.85484 0.78149 0.79058 0.78416 1.16462 1.20405 1.18864 1.21926 0.96203 1.12707 0.99342 1.22090 0.91731 0.93958 0.94480 1.67422 1.39290 1.24527 0.97955 0.87879 0.90666 0.91645 0.83097 0.81512 0.84973 0.80915 0.85915 0.91053 0.91006 0.86918 0.90638 0.73927 0.86222 0.89167 0.86020 0.82474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 9.92 71.98 0.71 -0.76 16 2 C -0.59 -4.31 6.53 71.98 0.47 -3.85 16 3 S 2.42 37.91 4.72 -56.49 -0.27 37.64 16 4 O -0.97 -19.63 18.10 -127.37 -2.30 -21.93 16 5 O -0.98 -26.07 18.10 -127.37 -2.30 -28.37 16 6 C -0.63 -8.77 6.13 71.98 0.44 -8.33 16 7 C 0.13 2.75 5.41 86.38 0.47 3.22 16 8 N -0.62 -14.38 2.87 -864.93 -2.49 -16.86 16 9 C 0.06 0.79 10.24 127.77 1.31 2.10 16 10 C 0.69 23.98 8.23 179.06 1.47 25.45 16 11 O -0.57 -25.27 14.22 -3.97 -0.06 -25.32 16 12 N -0.66 -23.26 5.27 -322.36 -1.70 -24.96 16 13 C 0.38 17.00 7.40 132.76 0.98 17.98 16 14 C -0.32 -14.77 6.97 23.00 0.16 -14.61 16 15 C 0.12 5.78 5.09 -21.11 -0.11 5.68 16 16 C -0.47 -25.18 9.66 23.52 0.23 -24.96 16 17 H 0.07 3.80 8.06 -2.91 -0.02 3.78 16 18 C 0.05 2.56 5.48 85.29 0.47 3.03 16 19 N -0.84 -43.27 13.92 21.84 0.30 -42.97 16 20 Si 0.97 39.64 24.49 68.60 1.68 41.32 16 21 H -0.24 -8.59 6.71 99.48 0.67 -7.92 16 22 H -0.28 -10.75 7.11 99.48 0.71 -10.05 16 23 H -0.26 -11.63 6.71 99.48 0.67 -10.96 16 24 C -0.28 -12.95 9.85 22.60 0.22 -12.73 16 25 C 0.13 5.76 11.10 84.27 0.94 6.70 16 26 N -0.57 -27.43 7.90 -194.26 -1.53 -28.97 16 27 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.15 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.17 0.10 8.14 -2.39 -0.02 0.08 16 32 H 0.13 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.17 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.12 1.72 8.07 -2.39 -0.02 1.70 16 35 H 0.07 1.93 7.42 -2.39 -0.02 1.91 16 36 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.11 0.68 8.07 -2.39 -0.02 0.66 16 38 H 0.08 0.91 6.30 -2.38 -0.02 0.89 16 39 H 0.42 11.31 6.39 -92.71 -0.59 10.72 16 40 H 0.12 5.10 4.78 -2.91 -0.01 5.08 16 41 H 0.30 13.65 8.29 -92.71 -0.77 12.88 16 42 H 0.12 5.25 8.06 -2.91 -0.02 5.22 16 43 H 0.16 5.96 8.06 -2.91 -0.02 5.94 16 Total: -1.00 -84.66 370.76 -0.53 -85.19 By element: Atomic # 1 Polarization: 25.94 SS G_CDS: 0.37 Total: 26.31 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: 7.76 Total: -1.07 kcal Atomic # 7 Polarization: -108.34 SS G_CDS: -5.41 Total: -113.76 kcal Atomic # 8 Polarization: -70.96 SS G_CDS: -4.67 Total: -75.63 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 1.68 Total: 41.32 kcal Atomic # 16 Polarization: 37.91 SS G_CDS: -0.27 Total: 37.64 kcal Total: -84.66 -0.53 -85.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365252500.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.701 kcal (2) G-P(sol) polarization free energy of solvation -84.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds