Wall clock time and date at job start Tue Mar 31 2020 23:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47264 * 2 1 4 4 C 1.50701 * 109.46667 * 240.00113 * 2 1 3 5 5 H 1.07998 * 120.00377 * 240.00054 * 4 2 1 6 6 C 1.37879 * 120.00034 * 60.00053 * 4 2 1 7 7 N 1.31512 * 120.00170 * 179.97438 * 6 4 2 8 8 Si 1.86796 * 119.99930 * 0.02562 * 6 4 2 9 9 H 1.48506 * 109.47129 * 269.99620 * 8 6 4 10 10 H 1.48502 * 109.47487 * 29.99631 * 8 6 4 11 11 H 1.48508 * 109.47472 * 149.99797 * 8 6 4 12 12 N 1.46898 * 109.47305 * 120.00395 * 2 1 3 13 13 C 1.46893 * 110.99959 * 274.99850 * 12 2 1 14 14 C 1.53003 * 109.47420 * 179.97438 * 13 12 2 15 15 C 1.50702 * 109.47420 * 179.97438 * 14 13 12 16 16 O 1.21287 * 119.99943 * 359.97438 * 15 14 13 17 17 N 1.34771 * 119.99856 * 180.02562 * 15 14 13 18 18 C 1.39929 * 120.00052 * 174.72791 * 17 15 14 19 19 C 1.38894 * 120.06570 * 326.55437 * 18 17 15 20 20 C 1.38096 * 119.92241 * 179.71919 * 19 18 17 21 21 C 1.38303 * 120.07158 * 0.57422 * 20 19 18 22 22 C 1.38260 * 120.14315 * 359.67898 * 21 20 19 23 23 S 1.76199 * 119.96550 * 180.02562 * 22 21 20 24 24 N 1.65593 * 107.21698 * 270.02167 * 23 22 21 25 25 O 1.42097 * 106.39948 * 23.56446 * 23 22 21 26 26 O 1.42099 * 106.40138 * 156.48178 * 23 22 21 27 27 C 1.38137 * 120.06667 * 0.04551 * 22 21 20 28 28 H 1.09002 * 109.46604 * 299.99658 * 1 2 3 29 29 H 1.08997 * 109.47172 * 59.99552 * 1 2 3 30 30 H 1.08994 * 109.47264 * 179.97438 * 1 2 3 31 31 H 0.97006 * 120.00152 * 180.02562 * 7 6 4 32 32 H 1.00900 * 110.99817 * 38.95041 * 12 2 1 33 33 H 1.08998 * 109.47270 * 299.99852 * 13 12 2 34 34 H 1.09002 * 109.47579 * 59.99983 * 13 12 2 35 35 H 1.08998 * 109.46893 * 300.00224 * 14 13 12 36 36 H 1.09002 * 109.46644 * 59.99551 * 14 13 12 37 37 H 0.96998 * 120.00502 * 354.72710 * 17 15 14 38 38 H 1.07993 * 120.03804 * 359.97438 * 19 18 17 39 39 H 1.08001 * 119.95784 * 180.25401 * 20 19 18 40 40 H 1.08002 * 119.92880 * 179.69957 * 21 20 19 41 41 H 0.97011 * 119.99829 * 149.99816 * 24 23 22 42 42 H 0.96995 * 120.00264 * 330.00204 * 24 23 22 43 43 H 1.07996 * 120.03085 * 180.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1316 6 6 1.6991 -0.2393 -2.4828 7 7 2.1378 -0.8589 -3.5566 8 14 0.6259 1.2799 -2.6540 9 1 -0.8021 0.8747 -2.6992 10 1 0.8492 2.1774 -1.4922 11 1 0.9771 1.9956 -3.9070 12 7 2.0198 -0.6926 1.1994 13 6 2.0826 0.2224 2.3468 14 6 2.5952 -0.5334 3.5744 15 6 2.6603 0.4055 4.7514 16 8 2.3297 1.5651 4.6212 17 7 3.0868 -0.0432 5.9485 18 6 3.2525 0.8506 7.0123 19 6 3.6646 2.1543 6.7679 20 6 3.8216 3.0357 7.8194 21 6 3.5804 2.6181 9.1156 22 6 3.1751 1.3195 9.3626 23 16 2.8684 0.7927 11.0158 24 7 4.2946 0.2013 11.6143 25 8 2.5753 1.9654 11.7627 26 8 1.9813 -0.3138 10.9262 27 6 3.0107 0.4346 8.3147 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.9037 -0.5273 -4.4376 32 1 1.4496 -1.4980 1.4099 33 1 2.7590 1.0460 2.1182 34 1 1.0872 0.6162 2.5526 35 1 1.9185 -1.3567 3.8028 36 1 3.5905 -0.9275 3.3689 37 1 3.2789 -0.9858 6.0728 38 1 3.8581 2.4795 5.7564 39 1 4.1381 4.0507 7.6296 40 1 3.7086 3.3080 9.9366 41 1 4.4855 0.2639 12.5634 42 1 4.9393 -0.2077 11.0159 43 1 2.6937 -0.5794 8.5082 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365310882.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:29 Heat of formation + Delta-G solvation = -74.296988 kcal Electronic energy + Delta-G solvation = -26272.014194 eV Core-core repulsion = 22251.490947 eV Total energy + Delta-G solvation = -4020.523247 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.94911 -38.99761 -37.60186 -36.50319 -36.27088 -35.18704 -33.70895 -33.07413 -31.79170 -31.46363 -30.12840 -27.92242 -25.12633 -24.24626 -23.57266 -22.29869 -20.77058 -20.29518 -19.88650 -18.96222 -17.86726 -17.60015 -17.21785 -16.85053 -16.58078 -16.33891 -15.83787 -15.69171 -15.08561 -15.00604 -14.51159 -14.27760 -14.14141 -13.72947 -13.34532 -13.19874 -12.75560 -12.63168 -12.59131 -12.53425 -12.47166 -12.25486 -12.16463 -11.85539 -11.72225 -11.54975 -11.10494 -11.00872 -10.87426 -10.84891 -10.51578 -10.13455 -10.12304 -9.75983 -9.51244 -9.18269 -8.69294 -8.58042 -7.51386 -6.06090 -4.03629 -0.09707 0.33589 0.71681 2.26873 2.57273 2.69960 3.03073 3.25430 3.31055 3.36753 3.38343 4.03008 4.26792 4.39743 4.44088 4.54616 4.68118 4.89271 4.94294 5.00118 5.12042 5.18726 5.24405 5.44869 5.45697 5.47339 5.61096 5.69237 5.84604 5.92065 6.09217 6.16922 6.21429 6.34732 6.43749 6.49190 6.49760 6.74298 6.95457 7.08533 7.67831 7.77956 7.85951 8.25237 8.66326 9.04208 9.56578 11.07251 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.032032 B = 0.001764 C = 0.001736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.914163 B =15869.833677 C =16127.340986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.183 3.817 3 H 0.035 0.965 4 C -0.499 4.499 5 H 0.082 0.918 6 C 0.067 3.933 7 N -0.901 5.901 8 Si 0.885 3.115 9 H -0.281 1.281 10 H -0.269 1.269 11 H -0.296 1.296 12 N -0.673 5.673 13 C 0.071 3.929 14 C -0.136 4.136 15 C 0.517 3.483 16 O -0.516 6.516 17 N -0.680 5.680 18 C 0.136 3.864 19 C -0.063 4.063 20 C -0.119 4.119 21 C -0.036 4.036 22 C -0.658 4.658 23 S 2.705 3.295 24 N -1.248 6.248 25 O -0.962 6.962 26 O -0.960 6.960 27 C -0.055 4.055 28 H 0.027 0.973 29 H 0.045 0.955 30 H 0.054 0.946 31 H 0.263 0.737 32 H 0.330 0.670 33 H 0.074 0.926 34 H 0.028 0.972 35 H 0.096 0.904 36 H 0.109 0.891 37 H 0.415 0.585 38 H 0.146 0.854 39 H 0.138 0.862 40 H 0.143 0.857 41 H 0.421 0.579 42 H 0.417 0.583 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.858 2.061 31.805 32.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.074 3.926 3 H 0.053 0.947 4 C -0.537 4.537 5 H 0.100 0.900 6 C -0.135 4.135 7 N -0.539 5.539 8 Si 0.716 3.284 9 H -0.208 1.208 10 H -0.194 1.194 11 H -0.224 1.224 12 N -0.302 5.302 13 C -0.060 4.060 14 C -0.176 4.176 15 C 0.306 3.694 16 O -0.390 6.390 17 N -0.326 5.326 18 C 0.041 3.959 19 C -0.084 4.084 20 C -0.138 4.138 21 C -0.056 4.056 22 C -0.746 4.746 23 S 2.793 3.207 24 N -0.922 5.922 25 O -0.952 6.952 26 O -0.949 6.949 27 C -0.077 4.077 28 H 0.046 0.954 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.147 0.853 33 H 0.093 0.907 34 H 0.046 0.954 35 H 0.114 0.886 36 H 0.127 0.873 37 H 0.252 0.748 38 H 0.164 0.836 39 H 0.156 0.844 40 H 0.161 0.839 41 H 0.251 0.749 42 H 0.245 0.755 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 6.299 3.076 31.617 32.385 hybrid contribution -0.794 0.416 -0.540 1.047 sum 5.505 3.492 31.077 31.754 Atomic orbital electron populations 1.22852 1.01421 1.00895 0.99009 1.19638 0.88639 0.95194 0.89090 0.94735 1.20963 1.31277 1.13764 0.87706 0.90016 1.24941 0.95992 0.96625 0.95899 1.69880 1.45865 1.40353 0.97832 0.86901 0.80563 0.83970 0.76942 1.20773 1.19440 1.22390 1.60635 1.57986 1.08842 1.02782 1.21676 0.99541 0.95604 0.89135 1.21697 1.05313 0.98277 0.92303 1.21236 0.75038 0.89611 0.83526 1.90733 1.45765 1.18857 1.83621 1.43723 1.67362 1.11544 1.09995 1.17808 0.99239 0.91496 0.87397 1.21629 0.93433 0.92231 1.01075 1.21251 1.00324 1.00261 0.91957 1.20929 0.93146 0.93313 0.98239 1.30451 1.18565 1.03320 1.22305 1.01484 0.72550 0.73725 0.72948 1.53129 1.40405 1.79198 1.19502 1.93603 1.82812 1.49090 1.69666 1.93624 1.61631 1.53401 1.86274 1.20650 0.96295 0.99964 0.90757 0.95423 0.93605 0.92687 0.92678 0.85322 0.90713 0.95364 0.88620 0.87289 0.74844 0.83636 0.84372 0.83913 0.74877 0.75547 0.83668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.93 8.64 37.16 0.32 -3.61 16 2 C 0.18 4.27 2.17 -68.86 -0.15 4.12 16 3 H 0.03 0.85 6.86 -51.93 -0.36 0.50 16 4 C -0.50 -13.89 9.42 -34.44 -0.32 -14.22 16 5 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 6 C 0.07 1.92 5.45 -17.82 -0.10 1.82 16 7 N -0.90 -27.45 13.96 55.43 0.77 -26.68 16 8 Si 0.89 22.04 24.37 -169.99 -4.14 17.90 16 9 H -0.28 -6.81 6.87 56.52 0.39 -6.42 16 10 H -0.27 -6.49 6.53 56.52 0.37 -6.12 16 11 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 12 N -0.67 -12.87 6.23 -107.96 -0.67 -13.54 16 13 C 0.07 1.14 4.77 -3.83 -0.02 1.12 16 14 C -0.14 -1.51 5.96 -27.88 -0.17 -1.67 16 15 C 0.52 6.00 7.57 -10.99 -0.08 5.92 16 16 O -0.52 -7.93 13.68 5.55 0.08 -7.86 16 17 N -0.68 -5.75 5.34 -9.86 -0.05 -5.80 16 18 C 0.14 1.28 6.28 -83.69 -0.53 0.75 16 19 C -0.06 -0.63 8.66 -39.39 -0.34 -0.97 16 20 C -0.12 -0.96 10.04 -39.61 -0.40 -1.36 16 21 C -0.04 -0.27 9.52 -39.55 -0.38 -0.65 16 22 C -0.66 -4.97 5.97 -39.61 -0.24 -5.21 16 23 S 2.70 18.74 6.28 -107.50 -0.68 18.06 16 24 N -1.25 -3.42 9.52 60.35 0.57 -2.84 16 25 O -0.96 -9.57 17.28 -57.17 -0.99 -10.56 16 26 O -0.96 -9.88 17.28 -57.17 -0.99 -10.87 16 27 C -0.05 -0.44 9.44 -39.39 -0.37 -0.81 16 28 H 0.03 0.52 7.45 -51.93 -0.39 0.13 16 29 H 0.05 1.04 3.27 -51.93 -0.17 0.87 16 30 H 0.05 1.13 8.13 -51.93 -0.42 0.70 16 31 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 32 H 0.33 5.74 8.47 -39.29 -0.33 5.41 16 33 H 0.07 1.32 8.01 -51.93 -0.42 0.90 16 34 H 0.03 0.48 7.39 -51.93 -0.38 0.09 16 35 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.42 2.03 8.82 -40.82 -0.36 1.67 16 38 H 0.15 1.62 6.43 -52.49 -0.34 1.28 16 39 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 40 H 0.14 0.83 7.61 -52.49 -0.40 0.43 16 41 H 0.42 0.52 8.96 -34.47 -0.31 0.21 16 42 H 0.42 0.23 8.96 -34.46 -0.31 -0.08 16 43 H 0.15 0.88 7.61 -52.49 -0.40 0.48 16 LS Contribution 367.02 15.07 5.53 5.53 Total: -1.00 -38.79 367.02 -8.78 -47.57 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -5.45 Total: 3.84 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: -2.77 Total: -14.76 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: 0.62 Total: -48.86 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -1.90 Total: -29.28 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.14 Total: 17.90 kcal Atomic # 16 Polarization: 18.74 SS G_CDS: -0.68 Total: 18.06 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -38.79 -8.78 -47.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365310882.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.723 kcal (2) G-P(sol) polarization free energy of solvation -38.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds