Wall clock time and date at job start Tue Mar 31 2020 23:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.47150 * 2 1 4 4 C 1.52994 * 109.47330 * 239.99965 * 2 1 3 5 5 S 1.81402 * 109.47390 * 179.97438 * 4 2 1 6 6 C 1.81396 * 101.92507 * 179.97438 * 5 4 2 7 7 O 1.42099 * 108.57752 * 65.51283 * 5 4 2 8 8 O 1.42099 * 108.57969 * 294.48941 * 5 4 2 9 9 N 1.46506 * 109.47114 * 119.99837 * 2 1 3 10 10 C 1.46497 * 119.99934 * 60.00537 * 9 2 1 11 11 C 1.34768 * 119.99938 * 240.00083 * 9 2 1 12 12 O 1.21583 * 120.00468 * 359.97438 * 11 9 2 13 13 N 1.34779 * 119.99999 * 180.02562 * 11 9 2 14 14 C 1.39463 * 120.00192 * 175.04697 * 13 11 9 15 15 C 1.38643 * 119.64774 * 185.34023 * 14 13 11 16 16 C 1.40824 * 118.67233 * 179.97438 * 15 14 13 17 17 C 1.41546 * 120.99592 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99951 * 151.72638 * 17 16 15 19 19 C 1.40022 * 120.00236 * 331.73494 * 17 16 15 20 20 N 1.30750 * 120.00088 * 350.07940 * 19 17 16 21 21 Si 1.86795 * 120.00408 * 170.07944 * 19 17 16 22 22 H 1.48505 * 109.46973 * 59.99686 * 21 19 17 23 23 H 1.48495 * 109.47629 * 179.97438 * 21 19 17 24 24 H 1.48509 * 109.47057 * 300.00098 * 21 19 17 25 25 C 1.41163 * 118.00580 * 359.97438 * 16 15 14 26 26 C 1.36593 * 119.12820 * 0.02562 * 25 16 15 27 27 N 1.32064 * 121.25786 * 359.73729 * 26 25 16 28 28 H 1.08994 * 109.47048 * 299.99750 * 1 2 3 29 29 H 1.09002 * 109.47314 * 60.00364 * 1 2 3 30 30 H 1.09007 * 109.46653 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47166 * 60.00074 * 4 2 1 32 32 H 1.08997 * 109.47269 * 300.00107 * 4 2 1 33 33 H 1.08997 * 109.47252 * 300.00580 * 6 5 4 34 34 H 1.09009 * 109.47040 * 60.00170 * 6 5 4 35 35 H 1.08993 * 109.47450 * 179.97438 * 6 5 4 36 36 H 1.09003 * 109.47084 * 89.99567 * 10 9 2 37 37 H 1.09000 * 109.46953 * 209.99851 * 10 9 2 38 38 H 1.08998 * 109.47028 * 329.99660 * 10 9 2 39 39 H 0.96994 * 120.00123 * 355.04675 * 13 11 9 40 40 H 1.07993 * 120.66342 * 359.97438 * 15 14 13 41 41 H 0.96998 * 120.00165 * 180.02562 * 20 19 17 42 42 H 1.08000 * 120.43708 * 179.97438 * 25 16 15 43 43 H 1.07997 * 119.36922 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 16 3.8540 -0.7206 -1.2496 6 6 4.2288 -1.6088 -2.7862 7 8 4.3072 -1.5027 -0.1532 8 8 4.3063 0.6203 -1.3792 9 7 2.0183 -0.6906 1.1962 10 6 1.6645 -2.0932 1.4280 11 6 2.7931 -0.0356 2.0833 12 8 3.0872 1.1283 1.8907 13 7 3.2428 -0.6711 3.1836 14 6 4.1276 -0.0271 4.0481 15 6 4.6721 -0.7237 5.1160 16 6 5.5636 -0.0536 5.9758 17 6 6.1478 -0.7171 7.0812 18 1 7.1148 -0.4063 7.4483 19 6 5.4720 -1.7766 7.6988 20 7 4.2276 -2.0289 7.3867 21 14 6.3482 -2.8297 8.9687 22 1 6.7881 -1.9759 10.1014 23 1 5.4208 -3.8759 9.4692 24 1 7.5322 -3.4740 8.3456 25 6 5.8573 1.2998 5.7021 26 6 5.2717 1.9026 4.6254 27 7 4.4432 1.2422 3.8369 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 1.6767 -0.2074 -2.1392 32 1 1.6767 -1.7489 -1.2492 33 1 3.8015 -2.6104 -2.7403 34 1 3.8008 -1.0694 -3.6313 35 1 5.3093 -1.6797 -2.9106 36 1 2.4159 -2.7376 0.9716 37 1 1.6239 -2.2852 2.5002 38 1 0.6905 -2.3002 0.9847 39 1 2.9511 -1.5763 3.3741 40 1 4.4176 -1.7595 5.2851 41 1 3.7594 -2.7626 7.8148 42 1 6.5355 1.8515 6.3361 43 1 5.4939 2.9377 4.4121 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001366309432.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:04 Heat of formation + Delta-G solvation = -38.093601 kcal Electronic energy + Delta-G solvation = -28514.744956 eV Core-core repulsion = 24495.791606 eV Total energy + Delta-G solvation = -4018.953350 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.10700 -38.25262 -36.92350 -36.34570 -35.87686 -34.25049 -33.77751 -32.10265 -30.38561 -29.89462 -28.30730 -27.93297 -26.79790 -25.88692 -22.78042 -21.80232 -20.71743 -19.26677 -18.79825 -18.15992 -17.50712 -16.83394 -16.39410 -16.17622 -15.69766 -15.45982 -15.22960 -14.90524 -14.12331 -14.06244 -13.75630 -13.60740 -13.47431 -13.34366 -13.31662 -13.14033 -12.73649 -12.61233 -12.49703 -12.33712 -12.12675 -12.05878 -11.95462 -11.87374 -11.35157 -11.25128 -11.14152 -11.02878 -10.82848 -10.53100 -10.19561 -10.05567 -9.63525 -9.46681 -9.28535 -8.55995 -7.84092 -7.60764 -6.91412 -6.65639 -4.52926 -0.12998 2.66966 2.79278 2.84300 2.90330 3.06075 3.09748 3.33185 3.58701 3.86907 3.91125 3.93567 4.28078 4.35016 4.45873 4.54823 4.80545 4.83363 4.95307 5.05039 5.15806 5.18677 5.34926 5.46787 5.51892 5.73351 5.76429 5.81476 5.94458 6.04253 6.51894 6.71951 6.73133 6.90256 7.04355 7.21457 7.25888 7.52235 7.59746 7.95146 8.16700 8.42183 8.55786 8.82406 8.85502 9.22326 9.83883 10.20052 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016511 B = 0.003142 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.462136 B = 8908.436350 C = 9005.044486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.169 3.831 3 H 0.120 0.880 4 C -0.629 4.629 5 S 2.418 3.582 6 C -0.666 4.666 7 O -0.916 6.916 8 O -0.925 6.925 9 N -0.643 5.643 10 C 0.071 3.929 11 C 0.699 3.301 12 O -0.528 6.528 13 N -0.659 5.659 14 C 0.355 3.645 15 C -0.239 4.239 16 C 0.146 3.854 17 C -0.458 4.458 18 H 0.080 0.920 19 C 0.076 3.924 20 N -0.798 5.798 21 Si 0.914 3.086 22 H -0.265 1.265 23 H -0.279 1.279 24 H -0.264 1.264 25 C -0.282 4.282 26 C 0.119 3.881 27 N -0.549 5.549 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.139 0.861 32 H 0.132 0.868 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.127 0.873 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.405 0.595 40 H 0.129 0.871 41 H 0.280 0.720 42 H 0.101 0.899 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.652 -5.996 -17.754 20.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.063 3.937 3 H 0.137 0.863 4 C -0.758 4.758 5 S 2.597 3.403 6 C -0.814 4.814 7 O -0.913 6.913 8 O -0.922 6.922 9 N -0.385 5.385 10 C -0.072 4.072 11 C 0.400 3.600 12 O -0.398 6.398 13 N -0.308 5.308 14 C 0.129 3.871 15 C -0.264 4.264 16 C 0.137 3.863 17 C -0.490 4.490 18 H 0.098 0.902 19 C -0.141 4.141 20 N -0.425 5.425 21 Si 0.738 3.262 22 H -0.190 1.190 23 H -0.204 1.204 24 H -0.188 1.188 25 C -0.306 4.306 26 C -0.035 4.035 27 N -0.268 5.268 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.158 0.842 32 H 0.151 0.849 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.146 0.854 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.241 0.759 40 H 0.146 0.854 41 H 0.091 0.909 42 H 0.120 0.880 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.420 -4.503 -18.000 20.376 hybrid contribution -0.114 -2.060 0.717 2.184 sum -8.534 -6.563 -17.283 20.362 Atomic orbital electron populations 1.22088 0.93547 1.02482 1.03015 1.20406 0.95473 0.97617 0.80210 0.86261 1.30832 1.27200 1.10467 1.07319 1.08139 0.78393 0.76550 0.77237 1.30421 1.12367 1.15144 1.23500 1.93631 1.78223 1.71613 1.47833 1.93635 1.78418 1.33870 1.86302 1.47304 1.55086 1.12519 1.23562 1.21793 1.00852 0.82266 1.02323 1.15977 0.78939 0.84962 0.80159 1.91037 1.59452 1.13917 1.75418 1.42604 1.47207 1.17993 1.22957 1.17991 0.90598 0.89993 0.88542 1.21536 1.07271 1.01109 0.96521 1.17556 0.88576 0.89913 0.90234 1.19512 1.04690 1.13034 1.11746 0.90160 1.25911 0.94366 0.96479 0.97358 1.69754 1.09211 1.25971 1.37519 0.86281 0.79982 0.79415 0.80480 1.19005 1.20368 1.18840 1.21699 1.09532 0.96289 1.03059 1.21488 0.93047 0.97833 0.91143 1.67210 1.20264 1.07472 1.31839 0.91291 0.91250 0.92057 0.84227 0.84930 0.85652 0.85744 0.85414 0.91627 0.91172 0.91108 0.75873 0.85369 0.90917 0.88040 0.86010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.17 37.16 0.34 -0.97 16 2 C 0.17 2.01 2.70 -67.93 -0.18 1.82 16 3 H 0.12 1.76 6.90 -51.93 -0.36 1.40 16 4 C -0.63 -4.86 5.18 37.15 0.19 -4.67 16 5 S 2.42 28.07 5.24 -107.50 -0.56 27.51 16 6 C -0.67 -4.20 10.62 101.05 1.07 -3.12 16 7 O -0.92 -14.48 15.65 -57.83 -0.91 -15.39 16 8 O -0.93 -15.35 18.10 -57.83 -1.05 -16.40 16 9 N -0.64 -9.53 1.58 -179.67 -0.28 -9.82 16 10 C 0.07 0.77 9.14 59.85 0.55 1.32 16 11 C 0.70 14.66 7.73 -86.92 -0.67 13.99 16 12 O -0.53 -13.24 13.93 5.29 0.07 -13.16 16 13 N -0.66 -14.39 5.27 -15.86 -0.08 -14.47 16 14 C 0.35 9.27 7.42 -154.67 -1.15 8.12 16 15 C -0.24 -6.38 8.60 -38.45 -0.33 -6.71 16 16 C 0.15 3.99 5.58 -106.55 -0.59 3.40 16 17 C -0.46 -12.18 9.13 -37.65 -0.34 -12.52 16 18 H 0.08 2.04 7.87 -52.49 -0.41 1.62 16 19 C 0.08 1.90 5.30 -17.34 -0.09 1.81 16 20 N -0.80 -20.19 10.84 55.55 0.60 -19.59 16 21 Si 0.91 18.49 29.57 -169.99 -5.03 13.46 16 22 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 23 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 24 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 25 C -0.28 -7.26 9.85 -39.07 -0.38 -7.64 16 26 C 0.12 3.04 11.10 -18.05 -0.20 2.84 16 27 N -0.55 -15.05 7.85 -12.75 -0.10 -15.15 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.42 6.66 -51.93 -0.35 0.07 16 31 H 0.14 0.58 8.14 -51.92 -0.42 0.16 16 32 H 0.13 0.60 7.67 -51.93 -0.40 0.21 16 33 H 0.12 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.12 0.49 8.14 -51.92 -0.42 0.07 16 35 H 0.13 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.68 7.37 -51.93 -0.38 0.29 16 37 H 0.07 0.77 6.30 -51.93 -0.33 0.44 16 38 H 0.07 0.52 6.43 -51.93 -0.33 0.19 16 39 H 0.40 7.44 6.39 -40.82 -0.26 7.18 16 40 H 0.13 3.39 6.28 -52.49 -0.33 3.06 16 41 H 0.28 6.43 8.29 -40.82 -0.34 6.09 16 42 H 0.10 2.39 8.06 -52.49 -0.42 1.96 16 43 H 0.12 2.74 8.06 -52.49 -0.42 2.32 16 LS Contribution 365.97 15.07 5.52 5.52 Total: -1.00 -39.60 365.97 -9.28 -48.87 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -5.67 Total: 10.96 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: -1.79 Total: -2.34 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: 0.14 Total: -59.03 kcal Atomic # 8 Polarization: -43.07 SS G_CDS: -1.88 Total: -44.95 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.03 Total: 13.46 kcal Atomic # 16 Polarization: 28.07 SS G_CDS: -0.56 Total: 27.51 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -39.60 -9.28 -48.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001366309432.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.780 kcal (2) G-P(sol) polarization free energy of solvation -39.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds