Wall clock time and date at job start Tue Mar 31 2020 23:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21281 * 120.00333 * 2 1 4 4 N 1.34777 * 120.00060 * 180.02562 * 2 1 3 5 5 C 1.39312 * 120.00359 * 185.45176 * 4 2 1 6 6 C 1.39064 * 120.59118 * 34.61230 * 5 4 2 7 7 N 1.31618 * 120.77475 * 180.26572 * 6 5 4 8 8 C 1.31926 * 122.16228 * 359.74260 * 7 6 5 9 9 C 1.37966 * 121.10982 * 359.97162 * 8 7 6 10 10 C 1.39953 * 119.08091 * 0.02827 * 9 8 7 11 11 C 1.47780 * 120.97037 * 179.97438 * 10 9 8 12 12 O 1.21566 * 119.99865 * 185.26376 * 11 10 9 13 13 N 1.34778 * 119.99805 * 5.26427 * 11 10 9 14 14 C 1.39907 * 119.99669 * 175.46821 * 13 11 10 15 15 C 1.38945 * 120.00144 * 35.12953 * 14 13 11 16 16 C 1.37995 * 119.99217 * 180.02562 * 15 14 13 17 17 C 1.38912 * 120.00713 * 359.97438 * 16 15 14 18 18 O 1.35775 * 119.99828 * 179.97438 * 17 16 15 19 19 C 1.34817 * 116.99985 * 354.67357 * 18 17 16 20 20 H 1.07993 * 119.99772 * 5.03591 * 19 18 17 21 21 C 1.38628 * 119.99640 * 185.03229 * 19 18 17 22 22 N 1.31574 * 120.00657 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99783 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47188 * 89.99773 * 23 21 19 25 25 H 1.48500 * 109.47242 * 210.00470 * 23 21 19 26 26 H 1.48509 * 109.46864 * 330.00018 * 23 21 19 27 27 C 1.38912 * 120.00514 * 0.25896 * 17 16 15 28 28 C 1.37993 * 120.00425 * 359.48704 * 27 17 16 29 29 H 1.09002 * 109.47126 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46586 * 299.99774 * 1 2 3 31 31 H 1.08993 * 109.46812 * 59.99657 * 1 2 3 32 32 H 0.97008 * 119.99744 * 5.45033 * 4 2 1 33 33 H 1.08002 * 119.61864 * 359.97438 * 6 5 4 34 34 H 1.07996 * 119.44325 * 179.97438 * 8 7 6 35 35 H 1.08001 * 120.46037 * 180.02562 * 9 8 7 36 36 H 0.96997 * 120.00162 * 355.47539 * 13 11 10 37 37 H 1.07993 * 120.00398 * 359.97438 * 15 14 13 38 38 H 1.08004 * 119.99456 * 179.97438 * 16 15 14 39 39 H 0.96999 * 120.00237 * 180.02562 * 22 21 19 40 40 H 1.08001 * 120.00133 * 179.72631 * 27 17 16 41 41 H 1.07997 * 120.00254 * 180.23535 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5693 -1.1701 0.1141 6 6 4.2168 -0.2200 0.8965 7 7 5.5286 -0.2162 1.0031 8 6 6.2859 -1.1032 0.3867 9 6 5.7307 -2.0864 -0.4062 10 6 4.3399 -2.1362 -0.5542 11 6 3.7011 -3.1711 -1.3937 12 8 2.5014 -3.1412 -1.5875 13 7 4.4486 -4.1480 -1.9444 14 6 3.8330 -5.1806 -2.6601 15 6 2.7024 -4.9185 -3.4240 16 6 2.0950 -5.9373 -4.1293 17 6 2.6142 -7.2246 -4.0762 18 8 2.0162 -8.2269 -4.7698 19 6 0.8617 -7.9310 -5.4001 20 1 0.4956 -6.9151 -5.4074 21 6 0.1448 -8.9309 -6.0388 22 7 0.5907 -10.1688 -6.0296 23 14 -1.4545 -8.5209 -6.9127 24 1 -1.1693 -8.1656 -8.3260 25 1 -2.3576 -9.6989 -6.8709 26 1 -2.1080 -7.3719 -6.2357 27 6 3.7417 -7.4878 -3.3086 28 6 4.3524 -6.4683 -2.6073 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.6991 -2.0054 -0.0807 33 1 3.6368 0.5263 1.4189 34 1 7.3585 -1.0590 0.5047 35 1 6.3607 -2.8076 -0.9057 36 1 5.4134 -4.1353 -1.8446 37 1 2.2985 -3.9178 -3.4650 38 1 1.2160 -5.7336 -4.7228 39 1 0.0892 -10.8683 -6.4769 40 1 4.1427 -8.4896 -3.2638 41 1 5.2313 -6.6722 -2.0136 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417596831.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:50:41 Heat of formation + Delta-G solvation = -19.457972 kcal Electronic energy + Delta-G solvation = -28028.115930 eV Core-core repulsion = 23874.526730 eV Total energy + Delta-G solvation = -4153.589200 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.51916 -40.09344 -39.35515 -38.67953 -36.71255 -35.37791 -34.32380 -32.71491 -32.17133 -31.36683 -30.32335 -29.20886 -28.10271 -25.56879 -24.91087 -23.90687 -22.55704 -21.72449 -21.06793 -20.42593 -18.75281 -18.01043 -17.89754 -17.58465 -17.22024 -16.70058 -16.20299 -15.68211 -15.29473 -15.25651 -14.83440 -14.58639 -14.37114 -14.12277 -14.01048 -13.90906 -13.72346 -13.58725 -13.07515 -12.96993 -12.68664 -12.62950 -12.57801 -11.89457 -11.71096 -11.64568 -11.23852 -11.09995 -10.88801 -10.50178 -10.42644 -10.34308 -10.07778 -9.79665 -9.71337 -9.31681 -8.80873 -8.65818 -8.32580 -7.06882 -6.52365 -4.10093 0.30128 0.66145 1.99896 2.11259 2.22392 2.68212 2.77666 2.96231 3.09324 3.10554 3.15115 3.52689 3.91216 4.15529 4.25283 4.31244 4.34748 4.47684 4.57219 4.80989 4.91039 5.01495 5.07276 5.16153 5.19380 5.38710 5.49890 5.52853 5.56060 5.63949 5.84029 5.97457 6.05169 6.20111 6.33718 6.59147 6.72471 6.86790 6.94757 7.03439 7.19825 7.33397 7.45618 7.54040 7.63383 7.74201 7.92262 8.06163 8.93168 9.60963 10.65186 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015201 B = 0.002495 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.520259 B =11219.715491 C =12887.438049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.514 3.486 3 O -0.532 6.532 4 N -0.655 5.655 5 C 0.158 3.842 6 C 0.098 3.902 7 N -0.449 5.449 8 C 0.073 3.927 9 C -0.121 4.121 10 C -0.121 4.121 11 C 0.555 3.445 12 O -0.524 6.524 13 N -0.644 5.644 14 C 0.025 3.975 15 C -0.060 4.060 16 C -0.222 4.222 17 C 0.149 3.851 18 O -0.174 6.174 19 C -0.392 4.392 20 H 0.093 0.907 21 C 0.040 3.960 22 N -0.861 5.861 23 Si 0.941 3.059 24 H -0.273 1.273 25 H -0.277 1.277 26 H -0.267 1.267 27 C -0.178 4.178 28 C -0.088 4.088 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.427 0.573 33 H 0.170 0.830 34 H 0.164 0.836 35 H 0.143 0.857 36 H 0.403 0.597 37 H 0.125 0.875 38 H 0.131 0.869 39 H 0.271 0.729 40 H 0.123 0.877 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.490 15.517 12.607 21.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.304 3.696 3 O -0.407 6.407 4 N -0.305 5.305 5 C 0.057 3.943 6 C -0.063 4.063 7 N -0.158 5.158 8 C -0.083 4.083 9 C -0.142 4.142 10 C -0.134 4.134 11 C 0.343 3.657 12 O -0.402 6.402 13 N -0.288 5.288 14 C -0.067 4.067 15 C -0.080 4.080 16 C -0.242 4.242 17 C 0.095 3.905 18 O -0.076 6.076 19 C -0.468 4.468 20 H 0.111 0.889 21 C -0.165 4.165 22 N -0.495 5.495 23 Si 0.766 3.234 24 H -0.198 1.198 25 H -0.202 1.202 26 H -0.191 1.191 27 C -0.198 4.198 28 C -0.108 4.108 29 H 0.102 0.898 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.270 0.730 33 H 0.187 0.813 34 H 0.182 0.818 35 H 0.161 0.839 36 H 0.239 0.761 37 H 0.143 0.857 38 H 0.149 0.851 39 H 0.081 0.919 40 H 0.141 0.859 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 6.338 16.419 12.856 21.795 hybrid contribution -0.847 -0.923 -1.050 1.635 sum 5.491 15.496 11.806 20.240 Atomic orbital electron populations 1.21848 0.90052 1.05194 1.05748 1.21161 0.91303 0.82750 0.74416 1.90744 1.70594 1.31257 1.48153 1.43887 1.04286 1.11583 1.70757 1.18828 0.84758 0.95978 0.94718 1.22943 0.90372 0.97530 0.95488 1.67578 1.05808 1.22940 1.19491 1.22686 1.00600 0.90769 0.94252 1.22236 0.93274 0.99789 0.98876 1.20243 0.94066 0.98930 1.00186 1.17972 0.86626 0.81488 0.79628 1.90661 1.14355 1.74432 1.60737 1.42986 1.09990 1.23871 1.51910 1.17206 1.00059 0.87105 1.02375 1.20835 0.94328 0.99284 0.93560 1.21101 1.04186 0.92634 1.06240 1.19426 0.92278 0.88356 0.90480 1.83974 1.35296 1.32631 1.55744 1.21350 0.97296 0.96138 1.31991 0.88937 1.25302 0.99322 0.94486 0.97349 1.70040 1.38609 1.00272 1.40573 0.85705 0.79886 0.78418 0.79424 1.19813 1.20189 1.19097 1.20005 0.98124 0.99218 1.02432 1.20358 0.99999 0.90439 0.99989 0.89805 0.88108 0.88078 0.72998 0.81266 0.81843 0.83888 0.76146 0.85691 0.85126 0.91911 0.85921 0.86631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.12 10.39 36.01 0.37 -0.75 16 2 C 0.51 5.47 7.67 -10.99 -0.08 5.38 16 3 O -0.53 -7.33 14.90 5.56 0.08 -7.25 16 4 N -0.66 -7.13 4.64 -9.57 -0.04 -7.17 16 5 C 0.16 1.84 6.28 -83.30 -0.52 1.32 16 6 C 0.10 1.14 9.83 -17.34 -0.17 0.97 16 7 N -0.45 -4.99 10.32 -13.14 -0.14 -5.13 16 8 C 0.07 0.62 11.16 -17.61 -0.20 0.42 16 9 C -0.12 -0.99 9.61 -39.04 -0.38 -1.36 16 10 C -0.12 -1.33 5.92 -104.50 -0.62 -1.95 16 11 C 0.56 7.31 7.61 -12.36 -0.09 7.22 16 12 O -0.52 -8.18 11.57 5.31 0.06 -8.12 16 13 N -0.64 -7.99 5.29 -10.69 -0.06 -8.04 16 14 C 0.02 0.40 6.30 -83.65 -0.53 -0.13 16 15 C -0.06 -1.13 8.69 -39.41 -0.34 -1.47 16 16 C -0.22 -4.74 9.16 -39.42 -0.36 -5.10 16 17 C 0.15 3.45 6.65 -39.08 -0.26 3.19 16 18 O -0.17 -4.79 9.75 0.01 0.00 -4.79 16 19 C -0.39 -10.67 9.48 30.88 0.29 -10.38 16 20 H 0.09 2.34 5.19 -52.49 -0.27 2.07 16 21 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 22 N -0.86 -24.65 13.67 55.48 0.76 -23.89 16 23 Si 0.94 20.09 29.55 -169.99 -5.02 15.07 16 24 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 25 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 26 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 27 C -0.18 -3.49 9.98 -39.42 -0.39 -3.89 16 28 C -0.09 -1.41 9.96 -39.41 -0.39 -1.81 16 29 H 0.08 0.45 7.92 -51.93 -0.41 0.04 16 30 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.43 4.50 6.49 -40.82 -0.27 4.24 16 33 H 0.17 1.96 6.53 -52.49 -0.34 1.61 16 34 H 0.16 0.84 8.06 -52.49 -0.42 0.42 16 35 H 0.14 0.70 6.55 -52.49 -0.34 0.36 16 36 H 0.40 3.49 6.97 -40.82 -0.28 3.21 16 37 H 0.13 2.30 6.22 -52.49 -0.33 1.97 16 38 H 0.13 2.82 5.63 -52.48 -0.30 2.52 16 39 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 41 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 LS Contribution 355.51 15.07 5.36 5.36 Total: -1.00 -34.10 355.51 -6.56 -40.66 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -3.79 Total: 10.65 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -3.77 Total: -7.35 kcal Atomic # 7 Polarization: -44.75 SS G_CDS: 0.52 Total: -44.23 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: 0.14 Total: -20.16 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.10 -6.56 -40.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417596831.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.200 kcal (2) G-P(sol) polarization free energy of solvation -34.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds