Wall clock time and date at job start Wed Apr 1 2020 00:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.47018 * 110.99708 * 2 1 4 4 C 1.53101 * 109.25692 * 182.39187 * 3 2 1 5 5 O 1.43019 * 109.25741 * 303.15266 * 4 3 2 6 6 C 1.43020 * 113.73778 * 58.67172 * 5 4 3 7 7 H 1.09001 * 109.50802 * 61.26147 * 6 5 4 8 8 C 1.53000 * 109.50506 * 181.39753 * 6 5 4 9 9 S 1.81411 * 109.46796 * 299.99497 * 8 6 5 10 10 O 1.42102 * 110.54370 * 289.74747 * 9 8 6 11 11 O 1.42105 * 110.54158 * 66.49668 * 9 8 6 12 12 N 1.65598 * 104.45001 * 178.11910 * 9 8 6 13 13 C 1.38827 * 119.99777 * 63.42502 * 12 9 8 14 14 C 1.39794 * 119.58179 * 185.81722 * 13 12 9 15 15 C 1.38598 * 119.48705 * 180.02562 * 14 13 12 16 16 C 1.38388 * 118.68388 * 0.02562 * 15 14 13 17 17 C 1.40553 * 119.14766 * 359.97438 * 16 15 14 18 18 C 1.41319 * 119.78454 * 180.02562 * 17 16 15 19 19 H 1.08000 * 119.99895 * 149.50313 * 18 17 16 20 20 C 1.40025 * 119.99453 * 329.50127 * 18 17 16 21 21 N 1.30743 * 119.99644 * 162.39210 * 20 18 17 22 22 Si 1.86797 * 120.00522 * 342.38673 * 20 18 17 23 23 H 1.48498 * 109.46976 * 95.23191 * 22 20 18 24 24 H 1.48502 * 109.47568 * 215.23815 * 22 20 18 25 25 H 1.48508 * 109.46884 * 335.23728 * 22 20 18 26 26 N 1.31955 * 119.58455 * 5.55062 * 13 12 9 27 27 C 1.47012 * 111.00137 * 123.63110 * 2 1 3 28 28 H 1.08999 * 109.47763 * 56.04378 * 1 2 3 29 29 H 1.09005 * 109.47264 * 176.04825 * 1 2 3 30 30 H 1.09004 * 109.47462 * 296.04915 * 1 2 3 31 31 H 1.08996 * 109.50985 * 302.32434 * 3 2 1 32 32 H 1.08995 * 109.50600 * 62.45881 * 3 2 1 33 33 H 1.09000 * 109.50206 * 63.08346 * 4 3 2 34 34 H 1.08995 * 109.50829 * 183.17550 * 4 3 2 35 35 H 1.08995 * 109.47639 * 59.99319 * 8 6 5 36 36 H 1.08991 * 109.47259 * 180.02562 * 8 6 5 37 37 H 0.96995 * 120.00064 * 243.43298 * 12 9 8 38 38 H 1.07997 * 120.25547 * 359.97438 * 14 13 12 39 39 H 1.08005 * 120.66041 * 180.02562 * 15 14 13 40 40 H 1.08001 * 120.42796 * 180.02562 * 16 15 14 41 41 H 0.97002 * 120.00226 * 180.02562 * 21 20 18 42 42 H 1.08993 * 109.51003 * 297.54478 * 27 2 1 43 43 H 1.09002 * 109.50261 * 57.67885 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9957 1.3726 0.0000 4 6 3.5249 1.3265 -0.0603 5 8 4.0174 0.5575 1.0403 6 6 3.5249 -0.7849 1.0709 7 1 3.8385 -1.3083 0.1676 8 6 4.0824 -1.5057 2.2999 9 16 5.8945 -1.5288 2.2170 10 8 6.3354 -2.4004 1.1850 11 8 6.4159 -0.2123 2.3367 12 7 6.3625 -2.2820 3.6156 13 6 6.0081 -3.6048 3.8436 14 6 6.3010 -4.1950 5.0766 15 6 5.9467 -5.5158 5.3020 16 6 5.3097 -6.2144 4.2914 17 6 5.0426 -5.5653 3.0737 18 6 4.3922 -6.2658 2.0327 19 1 3.7586 -5.7345 1.3380 20 6 4.5693 -7.6486 1.9022 21 7 3.7303 -8.3504 1.1860 22 14 6.0044 -8.4908 2.7511 23 1 5.5564 -9.0342 4.0585 24 1 6.5024 -9.5999 1.8984 25 1 7.0954 -7.5076 2.9714 26 7 5.3942 -4.2874 2.8959 27 6 1.9958 -0.7601 1.1427 28 1 -0.3634 0.5740 -0.8524 29 1 -0.3634 -1.0253 -0.0708 30 1 -0.3634 0.4513 0.9233 31 1 1.6133 1.9092 -0.8682 32 1 1.6826 1.8826 0.9110 33 1 3.8384 0.8644 -0.9964 34 1 3.9220 2.3399 -0.0037 35 1 3.7667 -0.9825 3.2024 36 1 3.7071 -2.5288 2.3224 37 1 6.8842 -1.7990 4.2754 38 1 6.8003 -3.6264 5.8471 39 1 6.1635 -5.9905 6.2476 40 1 5.0207 -7.2448 4.4368 41 1 3.8527 -9.3084 1.0959 42 1 1.6827 -0.2842 2.0719 43 1 1.6134 -1.7803 1.1086 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001424740933.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:01:00 Heat of formation + Delta-G solvation = -70.658027 kcal Electronic energy + Delta-G solvation = -28445.895334 eV Core-core repulsion = 24425.529885 eV Total energy + Delta-G solvation = -4020.365450 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.81994 -38.98225 -36.56727 -35.92204 -35.45374 -35.01300 -33.38129 -33.08471 -31.26542 -29.42334 -29.33808 -27.51104 -25.72789 -24.30880 -22.89501 -22.25091 -21.59285 -20.60946 -18.93457 -18.31551 -17.31282 -16.76673 -16.47320 -16.35969 -15.99811 -15.61241 -15.31435 -15.07497 -14.89710 -14.73479 -14.48157 -14.31422 -13.94842 -13.41382 -13.01821 -12.90939 -12.62934 -12.59473 -12.47099 -12.14984 -11.97559 -11.79035 -11.65111 -11.57828 -11.49336 -11.45479 -11.35162 -11.10814 -10.85668 -10.53804 -10.47459 -10.25902 -10.03544 -9.72637 -9.37525 -8.69523 -8.63201 -8.24092 -7.45793 -7.10678 -4.76928 0.63336 2.34486 2.45852 2.99727 3.01876 3.15262 3.24432 3.47203 3.58358 3.87472 4.11038 4.35437 4.60168 4.64258 4.70647 4.81145 4.87870 4.99959 5.02811 5.15503 5.23082 5.30669 5.35775 5.41529 5.50818 5.55434 5.64264 5.65650 5.77208 5.81056 5.95519 6.10221 6.32301 6.36195 6.62590 6.67742 6.70505 6.95402 6.96529 7.13017 7.30208 7.37275 7.69437 8.18405 8.32138 8.54976 9.33261 9.90198 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013223 B = 0.003889 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.975291 B = 7197.246008 C = 8527.014312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.543 5.543 3 C 0.015 3.985 4 C 0.062 3.938 5 O -0.380 6.380 6 C 0.105 3.895 7 H 0.088 0.912 8 C -0.618 4.618 9 S 2.621 3.379 10 O -0.921 6.921 11 O -0.957 6.957 12 N -1.039 6.039 13 C 0.395 3.605 14 C -0.323 4.323 15 C -0.021 4.021 16 C -0.301 4.301 17 C 0.288 3.712 18 C -0.412 4.412 19 H 0.102 0.898 20 C 0.089 3.911 21 N -0.790 5.790 22 Si 0.914 3.086 23 H -0.268 1.268 24 H -0.287 1.287 25 H -0.245 1.245 26 N -0.582 5.582 27 C 0.034 3.966 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.026 0.974 31 H 0.087 0.913 32 H 0.044 0.956 33 H 0.065 0.935 34 H 0.104 0.896 35 H 0.131 0.869 36 H 0.163 0.837 37 H 0.424 0.576 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.113 0.887 41 H 0.290 0.710 42 H 0.047 0.953 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.101 13.079 1.774 13.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.268 5.268 3 C -0.113 4.113 4 C -0.015 4.015 5 O -0.299 6.299 6 C 0.046 3.954 7 H 0.106 0.894 8 C -0.746 4.746 9 S 2.713 3.287 10 O -0.911 6.911 11 O -0.947 6.947 12 N -0.787 5.787 13 C 0.158 3.842 14 C -0.350 4.350 15 C -0.046 4.046 16 C -0.324 4.324 17 C 0.163 3.837 18 C -0.444 4.444 19 H 0.120 0.880 20 C -0.133 4.133 21 N -0.414 5.414 22 Si 0.740 3.260 23 H -0.194 1.194 24 H -0.214 1.214 25 H -0.168 1.168 26 N -0.305 5.305 27 C -0.095 4.095 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.045 0.955 31 H 0.106 0.894 32 H 0.062 0.938 33 H 0.083 0.917 34 H 0.122 0.878 35 H 0.150 0.850 36 H 0.181 0.819 37 H 0.259 0.741 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.130 0.870 41 H 0.101 0.899 42 H 0.065 0.935 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.663 13.368 -0.276 13.863 hybrid contribution -0.187 -0.555 2.448 2.517 sum -3.850 12.813 2.172 13.554 Atomic orbital electron populations 1.22384 0.86546 1.02830 1.00511 1.62181 1.08480 1.13458 1.42704 1.22848 0.96701 0.89974 1.01786 1.22722 0.92034 0.96675 0.90072 1.88101 1.69764 1.23127 1.48888 1.21681 0.93679 0.83535 0.96527 0.89438 1.30532 1.28669 1.10357 1.05070 1.04823 0.77132 0.73057 0.73687 1.93644 1.77627 1.65273 1.54513 1.93583 1.77038 1.38497 1.85584 1.53425 1.65698 1.18654 1.40964 1.17953 0.92567 0.83100 0.90592 1.20707 1.18798 0.97647 0.97827 1.20812 0.93235 0.93216 0.97296 1.21794 1.13054 1.01412 0.96135 1.18135 0.87718 0.86087 0.91745 1.19210 1.22668 0.91396 1.11087 0.88049 1.26093 0.96616 0.97090 0.93503 1.69600 1.31905 1.09060 1.30818 0.86280 0.82419 0.78870 0.78470 1.19361 1.21401 1.16836 1.67644 1.22391 1.11666 1.28802 1.22732 0.94596 1.00235 0.91982 0.91148 0.90775 0.95518 0.89430 0.93811 0.91719 0.87806 0.85039 0.81873 0.74118 0.87475 0.87304 0.86951 0.89904 0.93475 0.88573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.60 60.06 0.58 0.81 16 2 N -0.54 -6.36 4.99 -242.60 -1.21 -7.57 16 3 C 0.02 0.15 5.66 -3.71 -0.02 0.13 16 4 C 0.06 0.70 7.01 37.21 0.26 0.96 16 5 O -0.38 -5.67 9.44 -44.12 -0.42 -6.09 16 6 C 0.11 1.57 2.86 -26.68 -0.08 1.49 16 7 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 8 C -0.62 -9.55 5.60 37.16 0.21 -9.35 16 9 S 2.62 47.87 4.92 -107.50 -0.53 47.34 16 10 O -0.92 -20.76 16.92 -57.54 -0.97 -21.73 16 11 O -0.96 -18.16 17.32 -62.48 -1.08 -19.25 16 12 N -1.04 -18.12 5.74 31.15 0.18 -17.94 16 13 C 0.40 8.25 7.22 -155.32 -1.12 7.13 16 14 C -0.32 -6.24 9.95 -38.87 -0.39 -6.63 16 15 C -0.02 -0.42 10.15 -39.39 -0.40 -0.82 16 16 C -0.30 -6.86 7.17 -38.65 -0.28 -7.13 16 17 C 0.29 7.19 5.94 -85.00 -0.50 6.69 16 18 C -0.41 -10.85 9.79 -37.74 -0.37 -11.22 16 19 H 0.10 2.80 8.06 -52.49 -0.42 2.38 16 20 C 0.09 2.24 5.40 -17.35 -0.09 2.15 16 21 N -0.79 -19.92 13.92 55.55 0.77 -19.15 16 22 Si 0.91 20.00 24.51 -169.99 -4.17 15.83 16 23 H -0.27 -5.51 6.71 56.52 0.38 -5.13 16 24 H -0.29 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.25 -5.66 6.86 56.52 0.39 -5.27 16 26 N -0.58 -13.90 7.48 -10.33 -0.08 -13.98 16 27 C 0.03 0.43 4.95 -3.71 -0.02 0.41 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.13 1.70 8.14 -51.93 -0.42 1.28 16 36 H 0.16 2.70 7.18 -51.93 -0.37 2.32 16 37 H 0.42 5.88 8.78 -34.47 -0.30 5.58 16 38 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 39 H 0.11 1.79 8.06 -52.48 -0.42 1.37 16 40 H 0.11 2.49 4.75 -52.49 -0.25 2.24 16 41 H 0.29 6.57 8.29 -40.82 -0.34 6.23 16 42 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 359.94 15.07 5.42 5.42 Total: -1.00 -32.34 359.94 -10.31 -42.66 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -6.01 Total: 9.82 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: -2.22 Total: -15.37 kcal Atomic # 7 Polarization: -58.30 SS G_CDS: -0.33 Total: -58.64 kcal Atomic # 8 Polarization: -44.59 SS G_CDS: -2.47 Total: -47.07 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -4.17 Total: 15.83 kcal Atomic # 16 Polarization: 47.87 SS G_CDS: -0.53 Total: 47.34 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.34 -10.31 -42.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001424740933.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.999 kcal (2) G-P(sol) polarization free energy of solvation -32.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds