Wall clock time and date at job start Tue Mar 31 2020 23:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45196 * 109.47384 * 2 1 4 4 C 1.34228 * 117.00251 * 179.97438 * 3 2 1 5 5 O 1.20833 * 119.99785 * 0.02562 * 4 3 2 6 6 C 1.50693 * 120.00169 * 179.97438 * 4 3 2 7 7 C 1.50704 * 109.47185 * 180.02562 * 6 4 3 8 8 C 1.33408 * 125.97026 * 90.00456 * 7 6 4 9 9 N 1.32019 * 114.57068 * 180.02562 * 8 7 6 10 10 C 1.29624 * 116.90915 * 359.97438 * 9 8 7 11 11 N 1.39008 * 124.94216 * 180.26535 * 10 9 8 12 12 C 1.34768 * 120.00430 * 359.69620 * 11 10 9 13 13 O 1.21590 * 119.99637 * 359.97438 * 12 11 10 14 14 N 1.34775 * 120.00284 * 180.02562 * 12 11 10 15 15 C 1.46497 * 120.00200 * 359.97438 * 14 12 11 16 16 C 1.46500 * 119.99980 * 179.97438 * 14 12 11 17 17 H 1.08996 * 109.47246 * 359.97438 * 16 14 12 18 18 C 1.53002 * 109.47368 * 119.99977 * 16 14 12 19 19 C 1.50702 * 109.47285 * 239.99696 * 16 14 12 20 20 H 1.08001 * 119.99727 * 0.02562 * 19 16 14 21 21 C 1.37875 * 120.00150 * 179.97438 * 19 16 14 22 22 N 1.31511 * 119.99997 * 0.02562 * 21 19 16 23 23 Si 1.86805 * 119.99796 * 179.97438 * 21 19 16 24 24 H 1.48500 * 109.46687 * 90.00307 * 23 21 19 25 25 H 1.48501 * 109.47053 * 210.00276 * 23 21 19 26 26 H 1.48500 * 109.47189 * 330.00435 * 23 21 19 27 27 S 1.70968 * 110.10954 * 359.97438 * 10 9 8 28 28 H 1.08998 * 109.47113 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47014 * 299.99788 * 1 2 3 30 30 H 1.08999 * 109.46863 * 59.99746 * 1 2 3 31 31 H 1.09000 * 109.46906 * 239.99728 * 2 1 3 32 32 H 1.08999 * 109.46863 * 120.00254 * 2 1 3 33 33 H 1.09003 * 109.46851 * 60.00777 * 6 4 3 34 34 H 1.09006 * 109.47593 * 300.00246 * 6 4 3 35 35 H 1.08003 * 122.71113 * 359.97438 * 8 7 6 36 36 H 0.97004 * 119.99765 * 179.69524 * 11 10 9 37 37 H 1.09004 * 109.46971 * 89.99790 * 15 14 12 38 38 H 1.08991 * 109.47783 * 210.00431 * 15 14 12 39 39 H 1.09003 * 109.46864 * 330.00783 * 15 14 12 40 40 H 1.08996 * 109.47462 * 59.99484 * 18 16 14 41 41 H 1.09000 * 109.47498 * 179.97438 * 18 16 14 42 42 H 1.09000 * 109.46791 * 300.00054 * 18 16 14 43 43 H 0.97006 * 119.99968 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9208 2.9373 0.0000 7 6 5.4258 2.8584 0.0001 8 6 6.2084 2.8170 -1.0795 9 7 7.5007 2.7488 -0.8185 10 6 7.8468 2.7311 0.4306 11 7 9.1561 2.6674 0.8932 12 6 10.1785 2.6123 0.0169 13 8 9.9556 2.6179 -1.1784 14 7 11.4479 2.5501 0.4655 15 6 11.7164 2.5427 1.9056 16 6 12.5592 2.4896 -0.4871 17 1 12.1673 2.5046 -1.5041 18 6 13.4778 3.6949 -0.2763 19 6 13.3397 1.2191 -0.2687 20 1 13.0377 0.5257 0.5023 21 6 14.4385 0.9413 -1.0538 22 7 14.8058 1.7854 -1.9930 23 14 15.4062 -0.6333 -0.7825 24 1 14.8393 -1.7145 -1.6280 25 1 16.8275 -0.4105 -1.1508 26 1 15.3211 -1.0266 0.6470 27 16 6.4589 2.8057 1.4262 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.5846 3.4699 0.8896 34 1 3.5853 3.4690 -0.8905 35 1 5.8163 2.8368 -2.0857 36 1 9.3338 2.6626 1.8468 37 1 11.7310 1.5145 2.2673 38 1 12.6826 3.0092 2.0975 39 1 10.9351 3.0989 2.4237 40 1 13.8697 3.6796 0.7406 41 1 14.3050 3.6498 -0.9848 42 1 12.9134 4.6139 -0.4343 43 1 15.5792 1.5901 -2.5452 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001425897750.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:43 Heat of formation + Delta-G solvation = -47.103546 kcal Electronic energy + Delta-G solvation = -26641.919345 eV Core-core repulsion = 22622.575295 eV Total energy + Delta-G solvation = -4019.344051 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.76330 -40.24710 -38.91040 -36.93992 -35.64598 -34.58963 -33.05277 -32.53772 -31.77650 -29.38915 -27.33289 -26.26388 -25.22921 -24.76693 -23.54886 -22.22039 -21.37438 -20.11541 -19.32875 -18.17868 -18.01056 -17.18297 -16.94155 -16.52642 -16.44540 -16.01106 -15.31661 -15.15850 -14.62571 -14.56097 -14.16485 -14.07360 -13.63920 -13.40708 -13.18639 -13.04537 -12.85546 -12.63024 -12.61018 -12.19466 -11.96480 -11.67146 -11.56205 -11.33153 -11.05775 -10.88208 -10.86501 -10.79645 -10.70929 -10.47161 -10.23003 -10.15770 -9.80323 -9.19745 -9.17841 -8.95604 -8.42053 -8.12367 -7.59101 -6.06406 -4.14213 0.75150 0.97954 1.62609 1.97215 2.37429 2.96868 3.05317 3.28622 3.35236 3.36928 3.90489 4.18556 4.32269 4.42621 4.54082 4.55685 4.65397 4.75501 4.86606 4.89375 5.09610 5.24816 5.32242 5.37195 5.47784 5.56172 5.61806 5.93636 5.95861 6.15883 6.16631 6.40659 6.62724 6.78584 6.89757 7.06889 7.43045 7.51059 7.61109 7.72091 7.97347 8.08864 8.20747 8.56449 8.86343 9.16900 9.52368 10.98939 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.020501 B = 0.002176 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.456632 B =12865.070730 C =13442.942281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.361 6.361 4 C 0.455 3.545 5 O -0.491 6.491 6 C -0.019 4.019 7 C -0.266 4.266 8 C 0.105 3.895 9 N -0.477 5.477 10 C 0.320 3.680 11 N -0.648 5.648 12 C 0.689 3.311 13 O -0.529 6.529 14 N -0.602 5.602 15 C 0.085 3.915 16 C 0.273 3.727 17 H 0.066 0.934 18 C -0.147 4.147 19 C -0.525 4.525 20 H 0.059 0.941 21 C 0.064 3.936 22 N -0.887 5.887 23 Si 0.900 3.100 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.275 1.275 27 S 0.111 5.889 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.115 0.885 34 H 0.126 0.874 35 H 0.175 0.825 36 H 0.413 0.587 37 H 0.051 0.949 38 H 0.081 0.919 39 H 0.043 0.957 40 H 0.030 0.970 41 H 0.095 0.905 42 H 0.012 0.988 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.240 3.384 9.835 27.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.279 6.279 4 C 0.296 3.704 5 O -0.376 6.376 6 C -0.059 4.059 7 C -0.388 4.388 8 C -0.048 4.048 9 N -0.198 5.198 10 C -0.051 4.051 11 N -0.303 5.303 12 C 0.388 3.612 13 O -0.400 6.400 14 N -0.338 5.338 15 C -0.060 4.060 16 C 0.173 3.827 17 H 0.084 0.916 18 C -0.206 4.206 19 C -0.564 4.564 20 H 0.077 0.923 21 C -0.138 4.138 22 N -0.525 5.525 23 Si 0.728 3.272 24 H -0.206 1.206 25 H -0.211 1.211 26 H -0.200 1.200 27 S 0.361 5.639 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.133 0.867 34 H 0.144 0.856 35 H 0.192 0.808 36 H 0.252 0.748 37 H 0.070 0.930 38 H 0.099 0.901 39 H 0.061 0.939 40 H 0.049 0.951 41 H 0.114 0.886 42 H 0.031 0.969 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -24.556 3.065 9.474 26.498 hybrid contribution 0.488 -1.159 -0.106 1.262 sum -24.068 1.906 9.368 25.897 Atomic orbital electron populations 1.21808 0.92573 1.03032 1.03507 1.23035 0.95315 0.80134 1.02790 1.86482 1.24514 1.32543 1.84350 1.23785 0.80522 0.92943 0.73102 1.90738 1.60286 1.42854 1.43748 1.19434 0.88217 0.91312 1.06911 1.24684 0.98111 1.21314 0.94700 1.21590 0.86362 0.97138 0.99724 1.66677 1.16494 1.20823 1.15790 1.23451 0.90347 0.99625 0.91651 1.42750 1.01319 1.75629 1.10577 1.16054 0.80581 0.79492 0.85063 1.91015 1.82111 1.54067 1.12828 1.47660 1.04249 1.74506 1.07390 1.21544 1.01680 1.00954 0.81779 1.18942 0.80858 0.94150 0.88758 0.91600 1.22116 1.01646 0.95728 1.01096 1.21312 1.11702 1.04727 1.18692 0.92276 1.24888 0.97115 0.96960 0.94850 1.69877 1.26631 1.35609 1.20406 0.86475 0.79001 0.83331 0.78436 1.20615 1.21128 1.19969 1.83622 0.97284 1.72882 1.10096 0.90220 0.91477 0.91429 0.91118 0.91202 0.86710 0.85633 0.80810 0.74789 0.93033 0.90078 0.93873 0.95074 0.88608 0.96857 0.92651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 10.29 37.16 0.38 -0.35 16 2 C 0.06 0.46 6.19 37.16 0.23 0.69 16 3 O -0.36 -3.23 10.22 -39.25 -0.40 -3.64 16 4 C 0.46 4.74 7.95 36.00 0.29 5.02 16 5 O -0.49 -7.05 15.78 -18.76 -0.30 -7.35 16 6 C -0.02 -0.15 6.34 -29.04 -0.18 -0.33 16 7 C -0.27 -3.13 5.08 -35.99 -0.18 -3.31 16 8 C 0.10 1.52 11.24 -19.16 -0.22 1.31 16 9 N -0.48 -9.05 8.65 -15.12 -0.13 -9.18 16 10 C 0.32 5.36 8.02 -87.34 -0.70 4.66 16 11 N -0.65 -10.99 5.27 -17.48 -0.09 -11.08 16 12 C 0.69 15.19 8.24 -86.93 -0.72 14.47 16 13 O -0.53 -14.11 14.30 5.29 0.08 -14.04 16 14 N -0.60 -12.97 2.75 -181.01 -0.50 -13.47 16 15 C 0.08 1.36 9.44 59.85 0.57 1.93 16 16 C 0.27 7.03 2.64 -69.08 -0.18 6.85 16 17 H 0.07 1.99 6.90 -51.93 -0.36 1.63 16 18 C -0.15 -3.50 8.95 37.16 0.33 -3.17 16 19 C -0.53 -14.29 8.37 -34.44 -0.29 -14.58 16 20 H 0.06 1.59 7.65 -52.49 -0.40 1.18 16 21 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 22 N -0.89 -25.24 11.32 55.43 0.63 -24.61 16 23 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 27 S 0.11 1.33 23.22 -107.50 -2.50 -1.17 16 28 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 32 H 0.07 0.54 8.13 -51.93 -0.42 0.11 16 33 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.13 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.17 2.08 8.06 -52.48 -0.42 1.66 16 36 H 0.41 5.31 6.55 -40.82 -0.27 5.05 16 37 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.08 1.31 6.43 -51.93 -0.33 0.98 16 39 H 0.04 0.52 6.36 -51.93 -0.33 0.18 16 40 H 0.03 0.67 6.66 -51.93 -0.35 0.32 16 41 H 0.10 2.51 6.07 -51.93 -0.32 2.19 16 42 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 376.67 15.07 5.68 5.68 Total: -1.00 -36.68 376.67 -9.04 -45.71 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -5.71 Total: 2.01 kcal Atomic # 6 Polarization: 15.65 SS G_CDS: -0.77 Total: 14.88 kcal Atomic # 7 Polarization: -58.25 SS G_CDS: -0.09 Total: -58.35 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.62 Total: -25.02 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 1.33 SS G_CDS: -2.50 Total: -1.17 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.68 -9.04 -45.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001425897750.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.389 kcal (2) G-P(sol) polarization free energy of solvation -36.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds