Wall clock time and date at job start Tue Mar 31 2020 22:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47469 * 2 1 4 4 S 1.81407 * 109.47015 * 120.00128 * 2 1 3 5 5 O 1.42097 * 108.58028 * 70.50915 * 4 2 1 6 6 O 1.42103 * 108.57312 * 299.48599 * 4 2 1 7 7 C 1.81399 * 101.92055 * 185.00073 * 4 2 1 8 8 C 1.53006 * 109.46801 * 179.97438 * 7 4 2 9 9 N 1.46497 * 109.47111 * 180.02562 * 8 7 4 10 10 C 1.34777 * 120.00152 * 180.02562 * 9 8 7 11 11 O 1.21578 * 119.99929 * 359.97438 * 10 9 8 12 12 N 1.34779 * 119.99905 * 179.97438 * 10 9 8 13 13 C 1.39246 * 119.99674 * 185.63604 * 12 10 9 14 14 C 1.39684 * 119.57239 * 174.99887 * 13 12 10 15 15 C 1.38644 * 119.49313 * 180.02562 * 14 13 12 16 16 C 1.38354 * 118.67381 * 359.73271 * 15 14 13 17 17 C 1.40583 * 119.12777 * 0.53370 * 16 15 14 18 18 C 1.41331 * 119.78539 * 179.72859 * 17 16 15 19 19 H 1.07997 * 120.00366 * 6.09511 * 18 17 16 20 20 C 1.40023 * 119.99644 * 186.09085 * 18 17 16 21 21 N 1.30747 * 120.00194 * 6.11359 * 20 18 17 22 22 Si 1.86803 * 119.99889 * 186.10995 * 20 18 17 23 23 H 1.48501 * 109.47252 * 265.00384 * 22 20 18 24 24 H 1.48505 * 109.47076 * 25.00473 * 22 20 18 25 25 H 1.48507 * 109.47147 * 145.00244 * 22 20 18 26 26 N 1.31907 * 119.57661 * 355.02284 * 13 12 10 27 27 H 1.08992 * 109.47239 * 300.00133 * 1 2 3 28 28 H 1.09004 * 109.47004 * 60.00084 * 1 2 3 29 29 H 1.09007 * 109.47229 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47428 * 239.99884 * 2 1 3 31 31 H 1.08997 * 109.47097 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47048 * 299.99799 * 3 2 1 33 33 H 1.08997 * 109.46583 * 59.99576 * 3 2 1 34 34 H 1.09002 * 109.47403 * 60.00169 * 7 4 2 35 35 H 1.08994 * 109.47031 * 299.99288 * 7 4 2 36 36 H 1.08994 * 109.47068 * 59.99734 * 8 7 4 37 37 H 1.09000 * 109.46841 * 299.99958 * 8 7 4 38 38 H 0.97002 * 119.99743 * 359.97438 * 9 8 7 39 39 H 0.96998 * 120.00240 * 5.63424 * 12 10 9 40 40 H 1.07999 * 120.25476 * 0.02562 * 14 13 12 41 41 H 1.08004 * 120.66416 * 180.02562 * 15 14 13 42 42 H 1.08000 * 120.44068 * 180.25793 * 16 15 14 43 43 H 0.97002 * 119.99518 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 16 2.1346 -0.8552 1.4812 5 8 1.8618 -2.2431 1.3457 6 8 1.6604 -0.1636 2.6284 7 6 3.9265 -0.6032 1.3541 8 6 4.6208 -1.2691 2.5438 9 7 6.0679 -1.0651 2.4416 10 6 6.8877 -1.5680 3.3857 11 8 6.4263 -2.1906 4.3225 12 7 8.2191 -1.3807 3.2914 13 6 9.0751 -1.9978 4.1999 14 6 10.4571 -1.8836 4.0320 15 6 11.3078 -2.4991 4.9373 16 6 10.7567 -3.2080 5.9899 17 6 9.3577 -3.2908 6.1011 18 6 8.7800 -4.0162 7.1677 19 1 9.4074 -4.4212 7.9478 20 6 7.3939 -4.2096 7.2129 21 7 6.6471 -3.8247 6.2111 22 14 6.6118 -5.0177 8.7044 23 1 6.4498 -6.4721 8.4515 24 1 7.4824 -4.8155 9.8904 25 1 5.2815 -4.4080 8.9572 26 7 8.5704 -2.6831 5.2077 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 4.1444 0.4648 1.3580 35 1 4.2906 -1.0450 0.4267 36 1 4.4029 -2.3371 2.5404 37 1 4.2565 -0.8270 3.4711 38 1 6.4360 -0.5687 1.6940 39 1 8.5810 -0.8162 2.5906 40 1 10.8598 -1.3202 3.2034 41 1 12.3794 -2.4228 4.8258 42 1 11.3928 -3.6952 6.7141 43 1 5.6869 -3.9591 6.2424 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001426179312.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:30 Heat of formation + Delta-G solvation = -39.484616 kcal Electronic energy + Delta-G solvation = -27332.386458 eV Core-core repulsion = 23313.372789 eV Total energy + Delta-G solvation = -4019.013669 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.51460 -37.77284 -37.27183 -36.30278 -35.55122 -35.16549 -33.95647 -32.96945 -30.98538 -30.23354 -28.76692 -27.82806 -25.52290 -24.03913 -22.76597 -21.81639 -21.15063 -19.98510 -18.98631 -18.11446 -17.46681 -17.23505 -16.51596 -16.16686 -15.99240 -15.54868 -14.98049 -14.83908 -14.48394 -14.33746 -13.99569 -13.83181 -13.71241 -13.62384 -13.22851 -12.86682 -12.78595 -12.41213 -12.36319 -12.31666 -12.21880 -11.97020 -11.92276 -11.90278 -11.64933 -11.21763 -11.11195 -10.89145 -10.61376 -10.58029 -10.43299 -9.92017 -9.64512 -9.16732 -8.98090 -8.60103 -7.93383 -7.18709 -6.92632 -6.11901 -4.33520 -0.39783 2.39855 2.87639 3.06952 3.16136 3.23474 3.26173 3.31959 3.42689 3.62225 4.03078 4.08168 4.12495 4.18448 4.24756 4.52499 4.57349 4.75539 4.93075 4.95614 4.98608 5.09458 5.11294 5.23872 5.49628 5.51943 5.62067 5.71452 6.07249 6.13178 6.49391 6.61016 6.77160 6.84700 6.88610 7.26951 7.35332 7.64511 7.74858 7.84700 8.19844 8.32689 8.64431 8.83774 9.09610 9.54476 10.29676 10.53630 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014328 B = 0.002839 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.743203 B = 9859.027723 C =11555.625278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.576 4.576 3 C -0.148 4.148 4 S 2.425 3.575 5 O -0.930 6.930 6 O -0.927 6.927 7 C -0.632 4.632 8 C 0.159 3.841 9 N -0.755 5.755 10 C 0.664 3.336 11 O -0.461 6.461 12 N -0.672 5.672 13 C 0.386 3.614 14 C -0.359 4.359 15 C -0.035 4.035 16 C -0.307 4.307 17 C 0.272 3.728 18 C -0.425 4.425 19 H 0.082 0.918 20 C 0.058 3.942 21 N -0.653 5.653 22 Si 0.896 3.104 23 H -0.272 1.272 24 H -0.263 1.263 25 H -0.277 1.277 26 N -0.474 5.474 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.137 0.863 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.387 0.613 39 H 0.395 0.605 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.239 10.736 -16.478 22.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.685 4.685 3 C -0.206 4.206 4 S 2.604 3.396 5 O -0.927 6.927 6 O -0.924 6.924 7 C -0.760 4.760 8 C 0.033 3.967 9 N -0.417 5.417 10 C 0.362 3.638 11 O -0.324 6.324 12 N -0.320 5.320 13 C 0.146 3.854 14 C -0.385 4.385 15 C -0.060 4.060 16 C -0.330 4.330 17 C 0.148 3.852 18 C -0.456 4.456 19 H 0.101 0.899 20 C -0.171 4.171 21 N -0.271 5.271 22 Si 0.720 3.280 23 H -0.198 1.198 24 H -0.187 1.187 25 H -0.202 1.202 26 N -0.192 5.192 27 H 0.095 0.905 28 H 0.099 0.901 29 H 0.091 0.909 30 H 0.155 0.845 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.157 0.843 35 H 0.156 0.844 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.219 0.781 39 H 0.228 0.772 40 H 0.108 0.892 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.369 9.570 -14.870 21.580 hybrid contribution 1.493 0.772 -1.164 2.044 sum -10.876 10.341 -16.034 21.962 Atomic orbital electron populations 1.21636 0.89764 1.03985 1.04748 1.30077 1.07259 1.09785 1.21386 1.21776 1.01631 0.92128 1.05071 1.08164 0.77806 0.76095 0.77492 1.93615 1.82939 1.29690 1.86466 1.93603 1.78075 1.75522 1.45193 1.30698 1.25651 1.11234 1.08436 1.20560 0.80869 1.00715 0.94601 1.45155 1.05334 1.62601 1.28566 1.16404 0.81557 0.82095 0.83783 1.91386 1.73169 1.38543 1.29313 1.42512 1.04669 1.51715 1.33129 1.18307 0.85424 0.91825 0.89827 1.20404 0.91880 1.18832 1.07352 1.20540 0.96899 0.94821 0.93695 1.21622 0.96359 1.11969 1.03049 1.18373 0.87279 0.89071 0.90516 1.19568 0.92145 1.27924 1.05944 0.89943 1.26158 0.97978 0.96025 0.96986 1.70245 1.05937 1.24680 1.26270 0.86510 0.79222 0.79690 0.82572 1.19772 1.18737 1.20189 1.68608 1.35596 1.12077 1.02957 0.90535 0.90061 0.90867 0.84500 0.90983 0.90239 0.90283 0.84260 0.84371 0.90183 0.90238 0.78056 0.77200 0.89193 0.88641 0.88573 0.91437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.81 9.19 37.16 0.34 -0.47 16 2 C -0.58 -3.04 3.35 -26.73 -0.09 -3.13 16 3 C -0.15 -0.59 8.90 37.16 0.33 -0.26 16 4 S 2.42 22.49 4.26 -107.50 -0.46 22.04 16 5 O -0.93 -12.31 18.10 -57.83 -1.05 -13.36 16 6 O -0.93 -11.89 18.06 -57.83 -1.04 -12.94 16 7 C -0.63 -4.79 5.31 37.16 0.20 -4.60 16 8 C 0.16 2.14 5.68 -4.04 -0.02 2.12 16 9 N -0.75 -10.82 5.56 -65.23 -0.36 -11.19 16 10 C 0.66 13.71 8.52 -86.92 -0.74 12.97 16 11 O -0.46 -12.03 12.23 5.30 0.06 -11.96 16 12 N -0.67 -13.30 5.39 -15.78 -0.09 -13.39 16 13 C 0.39 9.55 7.43 -154.99 -1.15 8.40 16 14 C -0.36 -8.10 9.95 -38.89 -0.39 -8.49 16 15 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 16 C -0.31 -7.84 9.83 -38.66 -0.38 -8.22 16 17 C 0.27 7.81 6.53 -85.00 -0.55 7.25 16 18 C -0.43 -11.95 9.13 -37.74 -0.34 -12.30 16 19 H 0.08 2.16 7.85 -52.49 -0.41 1.75 16 20 C 0.06 1.58 5.48 -17.34 -0.09 1.48 16 21 N -0.65 -18.69 9.19 55.55 0.51 -18.18 16 22 Si 0.90 19.87 29.56 -169.99 -5.03 14.84 16 23 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 24 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 25 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 26 N -0.47 -13.59 5.77 -10.26 -0.06 -13.65 16 27 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 30 H 0.14 0.41 8.14 -51.92 -0.42 -0.01 16 31 H 0.07 0.16 6.39 -51.93 -0.33 -0.17 16 32 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.14 0.65 6.77 -51.92 -0.35 0.30 16 35 H 0.14 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.39 3.86 8.49 -40.82 -0.35 3.51 16 39 H 0.39 5.84 8.72 -40.82 -0.36 5.48 16 40 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 41 H 0.10 1.85 8.06 -52.48 -0.42 1.43 16 42 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 43 H 0.27 7.40 8.29 -40.82 -0.34 7.06 16 LS Contribution 372.86 15.07 5.62 5.62 Total: -1.00 -40.00 372.86 -11.19 -51.19 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -6.01 Total: 7.41 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: -3.30 Total: -6.44 kcal Atomic # 7 Polarization: -56.40 SS G_CDS: 0.00 Total: -56.40 kcal Atomic # 8 Polarization: -36.23 SS G_CDS: -2.03 Total: -38.26 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.03 Total: 14.84 kcal Atomic # 16 Polarization: 22.49 SS G_CDS: -0.46 Total: 22.04 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -40.00 -11.19 -51.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001426179312.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.702 kcal (2) G-P(sol) polarization free energy of solvation -39.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds