Wall clock time and date at job start Tue Mar 31 2020 23:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.81404 * 109.46855 * 2 1 4 4 O 1.42099 * 108.57956 * 65.51168 * 3 2 1 5 5 O 1.42100 * 108.57969 * 294.48579 * 3 2 1 6 6 C 1.81400 * 101.92090 * 180.02562 * 3 2 1 7 7 C 1.52992 * 109.47342 * 179.97438 * 6 3 2 8 8 H 1.09002 * 109.47044 * 59.99569 * 7 6 3 9 9 C 1.53003 * 109.47390 * 179.97438 * 7 6 3 10 10 N 1.46496 * 109.47143 * 300.00117 * 7 6 3 11 11 C 1.34778 * 120.00241 * 154.99966 * 10 7 6 12 12 O 1.21571 * 119.99926 * 359.97438 * 11 10 7 13 13 N 1.34782 * 120.00143 * 179.97438 * 11 10 7 14 14 C 1.39244 * 119.99994 * 184.95571 * 13 11 10 15 15 C 1.39682 * 119.57470 * 174.67519 * 14 13 11 16 16 C 1.38651 * 119.49455 * 179.97438 * 15 14 13 17 17 C 1.38350 * 118.66895 * 0.02562 * 16 15 14 18 18 C 1.40569 * 119.13600 * 359.97438 * 17 16 15 19 19 C 1.41333 * 119.79069 * 180.02562 * 18 17 16 20 20 H 1.07994 * 119.99809 * 5.24178 * 19 18 17 21 21 C 1.40025 * 120.00085 * 185.24858 * 19 18 17 22 22 N 1.30745 * 119.99930 * 354.76497 * 21 19 18 23 23 Si 1.86802 * 120.00036 * 174.77377 * 21 19 18 24 24 H 1.48500 * 109.47036 * 94.99283 * 23 21 19 25 25 H 1.48498 * 109.47058 * 214.99158 * 23 21 19 26 26 H 1.48497 * 109.47051 * 334.99590 * 23 21 19 27 27 N 1.31907 * 119.57255 * 354.40564 * 14 13 11 28 28 H 1.09001 * 109.47152 * 60.00214 * 1 2 3 29 29 H 1.08996 * 109.47104 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47224 * 300.00117 * 1 2 3 31 31 H 1.08998 * 109.47222 * 240.00434 * 2 1 3 32 32 H 1.09001 * 109.47152 * 119.99786 * 2 1 3 33 33 H 1.08996 * 109.46997 * 59.99646 * 6 3 2 34 34 H 1.08997 * 109.46662 * 300.00239 * 6 3 2 35 35 H 1.09000 * 109.47110 * 179.97438 * 9 7 6 36 36 H 1.08997 * 109.46794 * 300.00375 * 9 7 6 37 37 H 1.08996 * 109.46817 * 59.99752 * 9 7 6 38 38 H 0.96998 * 120.00269 * 334.99331 * 10 7 6 39 39 H 0.97000 * 119.99524 * 5.22968 * 13 11 10 40 40 H 1.07992 * 120.25024 * 359.95945 * 15 14 13 41 41 H 1.07997 * 120.66647 * 180.02562 * 16 15 14 42 42 H 1.08002 * 120.43043 * 179.97438 * 17 16 15 43 43 H 0.97007 * 119.99814 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.7591 2.3233 1.2258 5 8 1.7592 2.3233 -1.2258 6 6 3.9329 1.4721 -0.0008 7 6 4.6280 2.8350 -0.0015 8 1 4.3356 3.3924 0.8884 9 6 6.1447 2.6340 -0.0016 10 7 4.2340 3.5834 -1.1977 11 6 4.2827 4.9303 -1.1963 12 8 4.6530 5.5242 -0.2023 13 7 3.9207 5.6188 -2.2970 14 6 4.0683 7.0030 -2.3323 15 6 3.7963 7.6955 -3.5145 16 6 3.9433 9.0738 -3.5475 17 6 4.3586 9.7247 -2.3995 18 6 4.6167 8.9715 -1.2410 19 6 5.0411 9.6223 -0.0604 20 1 5.0849 10.7008 -0.0243 21 6 5.4050 8.8688 1.0623 22 7 5.2553 7.5700 1.0544 23 14 6.1039 9.7194 2.5715 24 1 5.0112 9.9821 3.5422 25 1 7.1270 8.8470 3.2020 26 1 6.7291 11.0051 2.1700 27 7 4.4581 7.6439 -1.2473 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 4.2252 0.9150 -0.8909 34 1 4.2259 0.9148 0.8890 35 1 6.6399 3.6050 -0.0025 36 1 6.4374 2.0773 0.8886 37 1 6.4373 2.0764 -0.8912 38 1 3.9382 3.1096 -1.9907 39 1 3.5537 5.1505 -3.0631 40 1 3.4741 7.1613 -4.3960 41 1 3.7378 9.6281 -4.4513 42 1 4.4829 10.7975 -2.3935 43 1 5.5070 7.0481 1.8324 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001426185707.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:31 Heat of formation + Delta-G solvation = -36.431278 kcal Electronic energy + Delta-G solvation = -28306.395134 eV Core-core repulsion = 24287.513867 eV Total energy + Delta-G solvation = -4018.881266 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.54801 -37.86557 -37.07014 -36.14878 -35.76460 -33.88909 -33.49594 -32.89751 -31.17893 -30.16713 -28.63486 -27.96415 -25.43067 -24.43329 -22.62141 -21.34899 -20.81213 -19.80920 -19.02151 -18.03317 -17.21595 -17.11797 -16.58770 -16.18487 -15.90617 -15.31639 -14.65850 -14.56157 -14.44037 -14.32726 -13.83105 -13.58195 -13.38278 -13.09841 -12.96129 -12.85226 -12.81065 -12.72767 -12.12795 -12.09446 -12.06056 -11.95499 -11.91481 -11.77124 -11.19115 -11.07748 -10.96090 -10.85841 -10.56124 -10.48038 -10.37945 -9.85777 -9.58323 -9.06452 -8.93613 -8.55844 -7.85585 -7.11857 -6.84081 -6.02295 -4.29217 -0.26151 2.56213 2.92986 3.17758 3.21851 3.24032 3.26583 3.35986 3.43880 3.77831 4.15012 4.19532 4.26566 4.29605 4.35667 4.66943 4.82275 4.83672 5.02974 5.11997 5.23534 5.26497 5.35884 5.40759 5.57927 5.74614 5.98392 6.13900 6.20119 6.32746 6.57791 6.70711 6.87237 6.93333 6.96329 7.32882 7.43938 7.71578 7.82935 7.91205 8.26466 8.38834 8.73694 8.89495 9.15929 9.65396 10.36900 10.59370 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013227 B = 0.003585 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.358635 B = 7808.536498 C = 8855.759005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.622 4.622 3 S 2.417 3.583 4 O -0.928 6.928 5 O -0.925 6.925 6 C -0.624 4.624 7 C 0.179 3.821 8 H 0.106 0.894 9 C -0.154 4.154 10 N -0.766 5.766 11 C 0.668 3.332 12 O -0.460 6.460 13 N -0.670 5.670 14 C 0.387 3.613 15 C -0.357 4.357 16 C -0.036 4.036 17 C -0.307 4.307 18 C 0.272 3.728 19 C -0.426 4.426 20 H 0.081 0.919 21 C 0.057 3.943 22 N -0.649 5.649 23 Si 0.894 3.106 24 H -0.272 1.272 25 H -0.279 1.279 26 H -0.264 1.264 27 N -0.472 5.472 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.130 0.870 32 H 0.129 0.871 33 H 0.135 0.865 34 H 0.144 0.856 35 H 0.075 0.925 36 H 0.062 0.938 37 H 0.054 0.946 38 H 0.392 0.608 39 H 0.397 0.603 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.189 -20.449 -1.874 20.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.750 4.750 3 S 2.598 3.402 4 O -0.925 6.925 5 O -0.922 6.922 6 C -0.753 4.753 7 C 0.072 3.928 8 H 0.123 0.877 9 C -0.214 4.214 10 N -0.428 5.428 11 C 0.366 3.634 12 O -0.324 6.324 13 N -0.318 5.318 14 C 0.148 3.852 15 C -0.383 4.383 16 C -0.060 4.060 17 C -0.330 4.330 18 C 0.147 3.853 19 C -0.457 4.457 20 H 0.100 0.900 21 C -0.172 4.172 22 N -0.267 5.267 23 Si 0.718 3.282 24 H -0.198 1.198 25 H -0.204 1.204 26 H -0.188 1.188 27 N -0.190 5.190 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.153 0.847 34 H 0.162 0.838 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.226 0.774 39 H 0.231 0.769 40 H 0.109 0.891 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.096 -19.773 0.058 20.014 hybrid contribution 0.322 -0.728 -1.025 1.298 sum -2.774 -20.501 -0.967 20.710 Atomic orbital electron populations 1.21507 0.90383 1.04670 1.03978 1.30326 1.07693 1.25824 1.11179 1.08312 0.78153 0.77788 0.75982 1.93621 1.80754 1.72542 1.45579 1.93580 1.80786 1.72385 1.45411 1.30697 1.25635 1.06962 1.12048 1.20194 0.95200 0.86828 0.90546 0.87651 1.22139 0.94447 1.03341 1.01434 1.45600 1.74872 1.05967 1.16393 1.16359 0.80995 0.80821 0.85199 1.91390 1.45950 1.65421 1.29609 1.42519 1.66337 1.05802 1.17141 1.18346 0.93564 0.82322 0.90991 1.20441 1.25453 0.94904 0.97486 1.20537 0.95766 0.93287 0.96437 1.21612 1.17067 0.98850 0.95516 1.18388 0.88284 0.86908 0.91764 1.19552 1.37042 0.94079 0.95031 0.90048 1.26184 0.96221 0.95094 0.99741 1.70356 1.25169 1.04412 1.26779 0.86539 0.79287 0.80271 0.82063 1.19784 1.20377 1.18799 1.68695 1.19340 1.08657 1.22352 0.90694 0.90251 0.90779 0.85188 0.85237 0.84662 0.83792 0.90579 0.91923 0.92641 0.77438 0.76940 0.89116 0.88672 0.88648 0.91693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.92 37.16 0.37 -0.63 16 2 C -0.62 -3.53 6.53 37.16 0.24 -3.29 16 3 S 2.42 24.79 4.60 -107.50 -0.49 24.29 16 4 O -0.93 -14.01 18.10 -57.83 -1.05 -15.05 16 5 O -0.92 -12.38 16.46 -57.83 -0.95 -13.33 16 6 C -0.62 -4.81 5.37 37.15 0.20 -4.61 16 7 C 0.18 2.38 2.63 -67.94 -0.18 2.20 16 8 H 0.11 1.70 7.58 -51.93 -0.39 1.31 16 9 C -0.15 -1.86 9.49 37.16 0.35 -1.51 16 10 N -0.77 -11.93 4.08 -58.68 -0.24 -12.17 16 11 C 0.67 14.44 8.49 -86.91 -0.74 13.70 16 12 O -0.46 -12.05 11.77 5.30 0.06 -11.99 16 13 N -0.67 -14.31 5.39 -15.78 -0.09 -14.39 16 14 C 0.39 9.96 7.43 -155.00 -1.15 8.81 16 15 C -0.36 -8.40 9.96 -38.89 -0.39 -8.78 16 16 C -0.04 -0.85 10.15 -39.39 -0.40 -1.25 16 17 C -0.31 -8.02 9.83 -38.66 -0.38 -8.40 16 18 C 0.27 7.91 6.55 -85.00 -0.56 7.35 16 19 C -0.43 -12.11 9.13 -37.74 -0.34 -12.46 16 20 H 0.08 2.16 7.85 -52.49 -0.41 1.75 16 21 C 0.06 1.55 5.49 -17.34 -0.10 1.45 16 22 N -0.65 -18.57 9.01 55.55 0.50 -18.07 16 23 Si 0.89 19.85 29.56 -169.99 -5.03 14.83 16 24 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 25 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 26 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 27 N -0.47 -13.81 5.75 -10.26 -0.06 -13.87 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.13 0.40 8.14 -51.92 -0.42 -0.02 16 32 H 0.13 0.44 8.14 -51.92 -0.42 0.02 16 33 H 0.14 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.14 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.39 4.92 7.79 -40.82 -0.32 4.60 16 39 H 0.40 6.77 8.72 -40.82 -0.36 6.42 16 40 H 0.09 1.84 8.06 -52.49 -0.42 1.41 16 41 H 0.10 1.91 8.06 -52.49 -0.42 1.48 16 42 H 0.10 2.31 8.06 -52.49 -0.42 1.88 16 43 H 0.27 7.27 8.29 -40.82 -0.34 6.94 16 LS Contribution 372.80 15.07 5.62 5.62 Total: -1.00 -39.79 372.80 -10.90 -50.69 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -6.11 Total: 10.86 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: -3.07 Total: -7.41 kcal Atomic # 7 Polarization: -58.62 SS G_CDS: 0.12 Total: -58.50 kcal Atomic # 8 Polarization: -38.44 SS G_CDS: -1.94 Total: -40.37 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.03 Total: 14.83 kcal Atomic # 16 Polarization: 24.79 SS G_CDS: -0.49 Total: 24.29 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -39.79 -10.90 -50.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001426185707.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.259 kcal (2) G-P(sol) polarization free energy of solvation -39.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds