Wall clock time and date at job start Tue Mar 31 2020 23:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21274 * 120.00203 * 2 1 4 4 N 1.34779 * 119.99928 * 180.02562 * 2 1 3 5 5 C 1.39463 * 119.99953 * 185.14982 * 4 2 1 6 6 C 1.39380 * 120.39314 * 32.41233 * 5 4 2 7 7 C 1.38282 * 118.43224 * 179.97438 * 6 5 4 8 8 C 1.39500 * 119.14540 * 359.97438 * 7 6 5 9 9 C 1.47879 * 119.64159 * 179.97438 * 8 7 6 10 10 O 1.21563 * 120.00121 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00373 * 180.02562 * 9 8 7 12 12 C 1.39826 * 120.00437 * 184.73809 * 11 9 8 13 13 C 1.38991 * 120.03889 * 323.55782 * 12 11 9 14 14 C 1.38152 * 120.06210 * 179.71774 * 13 12 11 15 15 C 1.38167 * 120.14216 * 0.55796 * 14 13 12 16 16 C 1.38907 * 120.07553 * 359.72314 * 15 14 13 17 17 O 1.35756 * 120.03473 * 179.97438 * 16 15 14 18 18 C 1.34825 * 117.00486 * 174.20996 * 17 16 15 19 19 H 1.08004 * 119.99572 * 5.06418 * 18 17 16 20 20 C 1.38653 * 120.00090 * 185.06011 * 18 17 16 21 21 N 1.31561 * 119.99525 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 120.00148 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.47020 * 89.99729 * 22 20 18 24 24 H 1.48499 * 109.47133 * 209.99854 * 22 20 18 25 25 H 1.48495 * 109.46941 * 330.00167 * 22 20 18 26 26 C 1.38739 * 120.03704 * 143.83323 * 12 11 9 27 27 N 1.32820 * 120.71370 * 0.02562 * 8 7 6 28 28 C 1.31348 * 121.70911 * 0.02562 * 27 8 7 29 29 H 1.09007 * 109.47163 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47367 * 299.99735 * 1 2 3 31 31 H 1.09001 * 109.47639 * 59.99829 * 1 2 3 32 32 H 0.97000 * 120.00432 * 5.15111 * 4 2 1 33 33 H 1.07994 * 120.78325 * 359.95326 * 6 5 4 34 34 H 1.07997 * 120.42218 * 179.72704 * 7 6 5 35 35 H 0.97009 * 119.99400 * 4.73693 * 11 9 8 36 36 H 1.07997 * 119.96402 * 359.97438 * 13 12 11 37 37 H 1.08003 * 119.92659 * 180.25542 * 14 13 12 38 38 H 1.08006 * 119.96184 * 179.74113 * 15 14 13 39 39 H 0.97006 * 119.99237 * 179.97438 * 21 20 18 40 40 H 1.07999 * 120.07202 * 359.97438 * 26 12 11 41 41 H 1.08001 * 119.60739 * 180.02562 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.5712 -1.1697 0.1079 6 6 4.2224 -0.1863 0.8505 7 6 5.6022 -0.2278 0.9313 8 6 6.2911 -1.2459 0.2718 9 6 7.7668 -1.3005 0.3504 10 8 8.3731 -0.4608 0.9868 11 7 8.4397 -2.2807 -0.2844 12 6 9.8250 -2.3912 -0.1298 13 6 10.6071 -1.2468 -0.0267 14 6 11.9752 -1.3555 0.1320 15 6 12.5716 -2.6010 0.1771 16 6 11.7962 -3.7485 0.0687 17 8 12.3832 -4.9718 0.1126 18 6 11.5650 -6.0434 0.1229 19 1 10.4988 -5.9097 0.0142 20 6 12.0923 -7.3169 0.2728 21 7 11.2939 -8.3625 0.2822 22 14 13.9363 -7.5480 0.4613 23 1 14.2967 -7.4987 1.9011 24 1 14.3305 -8.8639 -0.1029 25 1 14.6476 -6.4651 -0.2643 26 6 10.4211 -3.6432 -0.0848 27 7 5.6359 -2.1662 -0.4268 28 6 4.3262 -2.1556 -0.5249 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.6988 -2.0056 -0.0763 33 1 3.6626 0.5900 1.3507 34 1 6.1398 0.5207 1.4944 35 1 7.9629 -2.9095 -0.8486 36 1 10.1443 -0.2718 -0.0664 37 1 12.5803 -0.4649 0.2160 38 1 13.6419 -2.6826 0.2970 39 1 11.6629 -9.2535 0.3867 40 1 9.8161 -4.5339 -0.1688 41 1 3.8281 -2.9210 -1.1016 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434863946.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:50:23 Heat of formation + Delta-G solvation = -20.387732 kcal Electronic energy + Delta-G solvation = -27386.646005 eV Core-core repulsion = 23233.016488 eV Total energy + Delta-G solvation = -4153.629517 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.41398 -40.35154 -39.39665 -38.56611 -36.55536 -35.65044 -34.31450 -32.64390 -32.32771 -31.60568 -29.90431 -29.26976 -28.50469 -25.31416 -24.90670 -24.00014 -22.32443 -21.73255 -21.26949 -20.19776 -18.71427 -18.34817 -17.82242 -17.59990 -17.28256 -16.64563 -15.97943 -15.50180 -15.37831 -15.11501 -14.94216 -14.81646 -14.46261 -14.16762 -13.99634 -13.71877 -13.57738 -13.51771 -13.32525 -13.08055 -12.91254 -12.78677 -12.31508 -12.14629 -11.63909 -11.44459 -11.26331 -10.94810 -10.78910 -10.73353 -10.32526 -10.20530 -10.02784 -9.79749 -9.56029 -9.44254 -8.83836 -8.79829 -7.78661 -7.28584 -6.40057 -4.07148 0.24400 0.90264 1.83256 2.01680 2.30454 2.37013 2.76444 3.15479 3.23889 3.28120 3.42463 3.65024 3.91664 4.06586 4.25615 4.35510 4.45304 4.51933 4.58757 4.70540 4.76096 4.80656 4.88344 5.12324 5.18672 5.28057 5.45019 5.61219 5.70952 5.76194 5.94542 6.01199 6.21006 6.21703 6.24693 6.50596 6.65856 6.89478 6.94301 7.19083 7.22638 7.35961 7.43706 7.59943 7.74620 7.80657 8.04182 8.26062 8.95468 9.57662 10.67645 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.018464 B = 0.002123 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.103385 B =13183.047156 C =14524.944308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.510 3.490 3 O -0.522 6.522 4 N -0.667 5.667 5 C 0.114 3.886 6 C -0.089 4.089 7 C -0.085 4.085 8 C 0.064 3.936 9 C 0.571 3.429 10 O -0.515 6.515 11 N -0.648 5.648 12 C 0.175 3.825 13 C -0.196 4.196 14 C -0.066 4.066 15 C -0.198 4.198 16 C 0.173 3.827 17 O -0.216 6.216 18 C -0.389 4.389 19 H 0.105 0.895 20 C 0.063 3.937 21 N -0.881 5.881 22 Si 0.905 3.095 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.259 1.259 26 C -0.239 4.239 27 N -0.434 5.434 28 C 0.080 3.920 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.417 0.583 33 H 0.152 0.848 34 H 0.154 0.846 35 H 0.418 0.582 36 H 0.125 0.875 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.279 0.721 40 H 0.137 0.863 41 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.111 13.559 -1.285 25.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.299 3.701 3 O -0.396 6.396 4 N -0.314 5.314 5 C 0.017 3.983 6 C -0.116 4.116 7 C -0.107 4.107 8 C -0.075 4.075 9 C 0.357 3.643 10 O -0.390 6.390 11 N -0.292 5.292 12 C 0.082 3.918 13 C -0.217 4.217 14 C -0.085 4.085 15 C -0.217 4.217 16 C 0.120 3.880 17 O -0.121 6.121 18 C -0.465 4.465 19 H 0.123 0.877 20 C -0.140 4.140 21 N -0.519 5.519 22 Si 0.731 3.269 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.183 1.183 26 C -0.260 4.260 27 N -0.145 5.145 28 C -0.083 4.083 29 H 0.100 0.900 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.254 0.746 33 H 0.170 0.830 34 H 0.172 0.828 35 H 0.255 0.745 36 H 0.143 0.857 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.089 0.911 40 H 0.155 0.845 41 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -20.630 13.972 -1.198 24.944 hybrid contribution -0.577 -0.574 0.174 0.832 sum -21.207 13.398 -1.024 25.105 Atomic orbital electron populations 1.21868 0.90083 1.04890 1.06018 1.21156 0.91152 0.82942 0.74823 1.90779 1.70469 1.31178 1.47199 1.43580 1.04669 1.10513 1.72629 1.19024 0.84193 0.98182 0.96942 1.21589 0.94182 0.99007 0.96856 1.22046 0.93726 0.97657 0.97229 1.21067 0.94168 0.93668 0.98559 1.17776 0.85471 0.81729 0.79301 1.90804 1.68251 1.38399 1.41536 1.43240 1.06674 1.31846 1.47416 1.17447 0.81119 0.93763 0.99503 1.20745 0.93342 0.97336 1.10228 1.20548 0.93950 0.96084 0.97942 1.20264 0.99530 0.90376 1.11557 1.18787 0.90360 0.85930 0.92923 1.83598 1.35972 1.11375 1.81181 1.20739 0.91739 0.82619 1.51364 0.87721 1.24461 1.00099 0.93762 0.95691 1.69653 1.35603 0.98686 1.47936 0.86178 0.83733 0.77846 0.79137 1.19910 1.20844 1.18303 1.20970 0.95518 0.96337 1.13207 1.67516 1.09322 1.23076 1.14614 1.22618 0.88952 0.98636 0.98135 0.90032 0.88020 0.88100 0.74594 0.83005 0.82806 0.74494 0.85721 0.86362 0.86345 0.91111 0.84496 0.81646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.32 10.39 36.00 0.37 0.06 16 2 C 0.51 3.19 7.70 -10.99 -0.08 3.11 16 3 O -0.52 -5.68 14.75 5.56 0.08 -5.60 16 4 N -0.67 -3.41 5.33 -9.74 -0.05 -3.46 16 5 C 0.11 0.98 6.32 -83.54 -0.53 0.45 16 6 C -0.09 -0.91 8.75 -39.14 -0.34 -1.25 16 7 C -0.09 -1.01 9.62 -39.10 -0.38 -1.39 16 8 C 0.06 0.87 6.74 -83.02 -0.56 0.31 16 9 C 0.57 9.45 7.64 -12.31 -0.09 9.35 16 10 O -0.52 -9.62 13.82 5.31 0.07 -9.55 16 11 N -0.65 -10.98 5.31 -10.72 -0.06 -11.04 16 12 C 0.17 3.45 6.27 -83.75 -0.53 2.92 16 13 C -0.20 -3.75 8.69 -39.33 -0.34 -4.09 16 14 C -0.07 -1.21 10.03 -39.64 -0.40 -1.61 16 15 C -0.20 -4.02 9.99 -39.36 -0.39 -4.41 16 16 C 0.17 4.05 6.64 -39.14 -0.26 3.79 16 17 O -0.22 -5.73 8.58 0.04 0.00 -5.73 16 18 C -0.39 -10.96 9.95 30.89 0.31 -10.65 16 19 H 0.11 3.00 5.44 -52.48 -0.29 2.72 16 20 C 0.06 1.77 5.49 -17.51 -0.10 1.67 16 21 N -0.88 -25.39 13.96 55.48 0.77 -24.62 16 22 Si 0.91 21.75 28.62 -169.99 -4.86 16.88 16 23 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.26 -6.23 7.11 56.52 0.40 -5.83 16 26 C -0.24 -5.27 9.08 -39.20 -0.36 -5.62 16 27 N -0.43 -5.31 9.53 -9.65 -0.09 -5.41 16 28 C 0.08 0.72 11.12 -17.34 -0.19 0.53 16 29 H 0.08 -0.06 7.92 -51.92 -0.41 -0.47 16 30 H 0.10 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.10 0.16 8.14 -51.93 -0.42 -0.27 16 32 H 0.42 0.56 8.66 -40.82 -0.35 0.20 16 33 H 0.15 1.51 6.43 -52.49 -0.34 1.17 16 34 H 0.15 1.74 7.63 -52.49 -0.40 1.34 16 35 H 0.42 6.34 8.15 -40.82 -0.33 6.00 16 36 H 0.12 2.33 6.32 -52.49 -0.33 2.00 16 37 H 0.12 1.76 8.06 -52.48 -0.42 1.34 16 38 H 0.12 2.21 8.06 -52.48 -0.42 1.79 16 39 H 0.28 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.14 3.12 5.64 -52.49 -0.30 2.82 16 41 H 0.17 0.92 8.06 -52.49 -0.42 0.49 16 LS Contribution 360.61 15.07 5.43 5.43 Total: -1.00 -35.43 360.61 -6.56 -42.00 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -4.00 Total: 7.92 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -3.87 Total: -6.83 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: 0.57 Total: -44.52 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: 0.16 Total: -20.88 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.86 Total: 16.88 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.43 -6.56 -42.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434863946.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.608 kcal (2) G-P(sol) polarization free energy of solvation -35.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds