Wall clock time and date at job start Tue Mar 31 2020 23:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46501 * 109.47061 * 2 1 4 4 C 1.46502 * 119.99750 * 274.99667 * 3 2 1 5 5 C 1.52995 * 109.47319 * 275.00267 * 4 3 2 6 6 S 1.65597 * 119.99832 * 95.00402 * 3 2 1 7 7 O 1.42101 * 104.27661 * 333.92527 * 6 3 2 8 8 O 1.42103 * 104.27312 * 206.06667 * 6 3 2 9 9 C 1.81404 * 104.45230 * 89.99733 * 6 3 2 10 10 C 1.50692 * 109.47033 * 179.97438 * 9 6 3 11 11 O 1.21272 * 120.00154 * 0.02562 * 10 9 6 12 12 N 1.34778 * 119.99748 * 179.97438 * 10 9 6 13 13 C 1.39268 * 119.99910 * 185.54058 * 12 10 9 14 14 C 1.39668 * 119.57577 * 174.99974 * 13 12 10 15 15 C 1.38656 * 119.49634 * 180.02562 * 14 13 12 16 16 C 1.38343 * 118.66953 * 359.74075 * 15 14 13 17 17 C 1.40578 * 119.12908 * 0.50237 * 16 15 14 18 18 C 1.41340 * 119.78487 * 179.76607 * 17 16 15 19 19 H 1.07997 * 120.00636 * 5.87431 * 18 17 16 20 20 C 1.40033 * 119.99643 * 185.86705 * 18 17 16 21 21 N 1.30742 * 120.00085 * 5.94213 * 20 18 17 22 22 Si 1.86795 * 119.99882 * 185.93695 * 20 18 17 23 23 H 1.48505 * 109.47294 * 265.00759 * 22 20 18 24 24 H 1.48498 * 109.47134 * 25.00704 * 22 20 18 25 25 H 1.48496 * 109.47129 * 145.00812 * 22 20 18 26 26 N 1.31910 * 119.57619 * 355.01381 * 13 12 10 27 27 H 1.08996 * 109.46953 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46748 * 299.99907 * 1 2 3 29 29 H 1.09000 * 109.46876 * 59.99824 * 1 2 3 30 30 H 1.09002 * 109.47120 * 239.99918 * 2 1 3 31 31 H 1.09000 * 109.46876 * 120.00176 * 2 1 3 32 32 H 1.08999 * 109.47148 * 35.00420 * 4 3 2 33 33 H 1.09001 * 109.46309 * 155.00535 * 4 3 2 34 34 H 1.09002 * 109.47243 * 180.02562 * 5 4 3 35 35 H 1.08999 * 109.47136 * 300.00161 * 5 4 3 36 36 H 1.08996 * 109.47246 * 60.00347 * 5 4 3 37 37 H 1.08996 * 109.46983 * 59.99737 * 9 6 3 38 38 H 1.09004 * 109.46916 * 299.99916 * 9 6 3 39 39 H 0.96998 * 120.00585 * 5.53984 * 12 10 9 40 40 H 1.08004 * 120.25305 * 359.97438 * 14 13 12 41 41 H 1.08005 * 120.66414 * 180.02562 * 15 14 13 42 42 H 1.08009 * 120.43515 * 180.24119 * 16 15 14 43 43 H 0.96999 * 120.00066 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1086 -1.2640 5 6 3.5152 1.7838 -1.8918 6 16 2.4123 2.1201 1.4287 7 8 1.6209 1.4495 2.3999 8 8 2.2335 3.5055 1.1676 9 6 4.1698 1.7388 1.6661 10 6 4.6509 2.3654 2.9494 11 8 3.8836 3.0057 3.6364 12 7 5.9336 2.2133 3.3341 13 6 6.3503 2.6925 4.5735 14 6 7.6531 2.4385 5.0083 15 6 8.0661 2.9160 6.2428 16 6 7.1692 3.6392 7.0086 17 6 5.8701 3.8570 6.5176 18 6 4.9411 4.5897 7.2907 19 1 5.2560 5.0609 8.2100 20 6 3.6122 4.7050 6.8644 21 7 3.2022 4.0409 5.8155 22 14 2.4253 5.8076 7.7944 23 1 1.6666 4.9974 8.7809 24 1 3.1865 6.8666 8.5045 25 1 1.4793 6.4353 6.8372 26 7 5.5095 3.3802 5.3219 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.3618 1.8097 -1.9453 33 1 2.0923 3.1802 -1.0755 34 1 3.6195 2.3254 -2.8320 35 1 4.3117 2.0828 -1.2104 36 1 3.5813 0.7123 -2.0801 37 1 4.7442 2.1374 0.8299 38 1 4.3035 0.6582 1.7165 39 1 6.5665 1.7700 2.7478 40 1 8.3334 1.8738 4.3880 41 1 9.0694 2.7310 6.5974 42 1 7.4620 4.0279 7.9728 43 1 2.2816 4.1204 5.5205 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001455176837.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:55 Heat of formation + Delta-G solvation = -44.211600 kcal Electronic energy + Delta-G solvation = -28496.932014 eV Core-core repulsion = 24477.713368 eV Total energy + Delta-G solvation = -4019.218647 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.48966 -37.62490 -37.35437 -36.99422 -35.67350 -34.30027 -33.09075 -32.18586 -30.71189 -30.24363 -28.99540 -28.58277 -25.54320 -23.95347 -22.55938 -22.14259 -21.28441 -19.71681 -18.69745 -17.93341 -17.72981 -16.73799 -16.48219 -16.16022 -15.77301 -15.39301 -14.66503 -14.51560 -14.46465 -14.28488 -14.04482 -13.70629 -13.60805 -13.37486 -13.06350 -12.85930 -12.81297 -12.33945 -12.03236 -11.98258 -11.91274 -11.86777 -11.79309 -11.78234 -11.18124 -11.13953 -11.03101 -10.93482 -10.81669 -10.66576 -10.49777 -9.99076 -9.76547 -9.49863 -9.27675 -9.05389 -8.02695 -7.31360 -7.06771 -6.19665 -4.39999 0.24744 2.63230 2.69378 3.01706 3.21770 3.25186 3.26659 3.44654 3.50460 4.03465 4.09598 4.23047 4.42783 4.76431 4.80601 4.86253 4.90201 4.94377 5.09860 5.11494 5.15430 5.24741 5.33571 5.50084 5.61918 5.69502 5.87162 5.99061 5.99276 6.06736 6.11697 6.41864 6.43742 6.55766 6.74775 6.81343 7.22172 7.45220 7.54152 7.77051 7.91891 8.11754 8.38450 8.64266 8.94377 9.03612 10.18259 10.47533 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013417 B = 0.003943 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.472920 B = 7099.301956 C = 8559.621190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.120 3.880 3 N -1.005 6.005 4 C 0.106 3.894 5 C -0.178 4.178 6 S 2.640 3.360 7 O -0.932 6.932 8 O -0.938 6.938 9 C -0.674 4.674 10 C 0.502 3.498 11 O -0.408 6.408 12 N -0.653 5.653 13 C 0.367 3.633 14 C -0.356 4.356 15 C -0.036 4.036 16 C -0.302 4.302 17 C 0.271 3.729 18 C -0.422 4.422 19 H 0.085 0.915 20 C 0.058 3.942 21 N -0.660 5.660 22 Si 0.897 3.103 23 H -0.271 1.271 24 H -0.262 1.262 25 H -0.275 1.275 26 N -0.476 5.476 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.403 0.597 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.517 -8.862 -16.998 19.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.006 4.006 3 N -0.843 5.843 4 C -0.019 4.019 5 C -0.237 4.237 6 S 2.729 3.271 7 O -0.922 6.922 8 O -0.928 6.928 9 C -0.803 4.803 10 C 0.281 3.719 11 O -0.273 6.273 12 N -0.300 5.300 13 C 0.128 3.872 14 C -0.381 4.381 15 C -0.060 4.060 16 C -0.325 4.325 17 C 0.147 3.853 18 C -0.452 4.452 19 H 0.103 0.897 20 C -0.171 4.171 21 N -0.278 5.278 22 Si 0.721 3.279 23 H -0.196 1.196 24 H -0.186 1.186 25 H -0.200 1.200 26 N -0.195 5.195 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.114 0.886 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.167 0.833 38 H 0.168 0.832 39 H 0.237 0.763 40 H 0.110 0.890 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.784 -7.787 -16.388 18.535 hybrid contribution 1.573 -0.506 -0.095 1.655 sum -2.211 -8.292 -16.484 18.584 Atomic orbital electron populations 1.22206 0.95722 1.02364 1.02982 1.21224 0.95084 0.81348 1.02908 1.57968 1.79571 1.24034 1.22744 1.21384 0.97762 0.97755 0.85024 1.22309 0.97491 1.02429 1.01463 1.04442 0.76011 0.74202 0.72495 1.93590 1.64128 1.75744 1.58744 1.93565 1.84361 1.31050 1.83782 1.31300 1.30111 1.12281 1.06608 1.19314 0.84305 0.82977 0.85262 1.91273 1.52129 1.33574 1.50302 1.43155 1.10100 1.58743 1.18010 1.18541 0.89682 0.93443 0.85513 1.20428 0.96428 1.19603 1.01685 1.20564 0.97081 0.95050 0.93287 1.21635 0.97023 1.11830 1.02023 1.18350 0.89806 0.89349 0.87830 1.19615 0.92941 1.26533 1.06104 0.89739 1.26158 0.99412 0.96316 0.95249 1.70167 1.16268 1.26514 1.14886 0.86473 0.80496 0.80834 0.80047 1.19608 1.18617 1.20001 1.68578 1.31098 1.13828 1.05995 0.91545 0.91376 0.92433 0.90512 0.90058 0.89950 0.88601 0.91103 0.92640 0.92000 0.83325 0.83205 0.76308 0.89011 0.88487 0.88397 0.91093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.57 10.24 37.16 0.38 -1.19 16 2 C 0.12 1.04 5.98 -4.04 -0.02 1.01 16 3 N -1.01 -10.74 2.71 -114.38 -0.31 -11.05 16 4 C 0.11 0.91 6.38 -4.04 -0.03 0.88 16 5 C -0.18 -1.15 10.24 37.15 0.38 -0.77 16 6 S 2.64 42.17 4.51 -107.50 -0.48 41.69 16 7 O -0.93 -18.11 16.75 -57.55 -0.96 -19.07 16 8 O -0.94 -18.17 16.53 -57.55 -0.95 -19.12 16 9 C -0.67 -9.10 6.66 36.00 0.24 -8.86 16 10 C 0.50 10.28 7.81 -10.99 -0.09 10.19 16 11 O -0.41 -10.62 11.75 5.56 0.07 -10.55 16 12 N -0.65 -12.82 5.38 -11.40 -0.06 -12.88 16 13 C 0.37 9.01 7.43 -154.97 -1.15 7.86 16 14 C -0.36 -7.94 9.95 -38.89 -0.39 -8.32 16 15 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 16 C -0.30 -7.63 9.83 -38.66 -0.38 -8.01 16 17 C 0.27 7.72 6.53 -85.00 -0.55 7.16 16 18 C -0.42 -11.79 9.13 -37.73 -0.34 -12.14 16 19 H 0.08 2.19 7.85 -52.49 -0.41 1.78 16 20 C 0.06 1.59 5.48 -17.34 -0.10 1.49 16 21 N -0.66 -19.17 9.18 55.55 0.51 -18.66 16 22 Si 0.90 20.02 29.56 -169.99 -5.03 14.99 16 23 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 24 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 25 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 26 N -0.48 -13.62 5.77 -10.26 -0.06 -13.68 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.79 7.90 -51.93 -0.41 0.38 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.44 8.11 -51.93 -0.42 0.02 16 31 H 0.08 0.70 7.61 -51.93 -0.40 0.31 16 32 H 0.08 0.54 8.11 -51.93 -0.42 0.12 16 33 H 0.10 0.96 6.82 -51.93 -0.35 0.60 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.05 0.37 6.96 -51.93 -0.36 0.01 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.15 1.44 6.96 -51.93 -0.36 1.07 16 38 H 0.15 1.46 8.14 -51.92 -0.42 1.03 16 39 H 0.40 5.78 8.70 -40.82 -0.36 5.43 16 40 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 41 H 0.10 1.85 8.06 -52.48 -0.42 1.43 16 42 H 0.10 2.29 8.06 -52.48 -0.42 1.86 16 43 H 0.28 7.69 8.29 -40.82 -0.34 7.35 16 LS Contribution 371.47 15.07 5.60 5.60 Total: -1.00 -38.35 371.47 -10.14 -48.49 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -6.01 Total: 6.15 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -2.45 Total: -11.90 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: 0.08 Total: -56.27 kcal Atomic # 8 Polarization: -46.90 SS G_CDS: -1.85 Total: -48.74 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.03 Total: 14.99 kcal Atomic # 16 Polarization: 42.17 SS G_CDS: -0.48 Total: 41.69 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -38.35 -10.14 -48.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001455176837.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.282 kcal (2) G-P(sol) polarization free energy of solvation -38.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds