Wall clock time and date at job start Tue Mar 31 2020 23:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47085 * 2 1 4 4 C 1.50708 * 109.46704 * 119.99573 * 2 1 3 5 5 H 1.07996 * 120.00021 * 94.48500 * 4 2 1 6 6 C 1.37878 * 119.99866 * 274.48049 * 4 2 1 7 7 N 1.31516 * 119.99802 * 6.52098 * 6 4 2 8 8 Si 1.86800 * 119.99998 * 186.52717 * 6 4 2 9 9 H 1.48500 * 109.46721 * 269.99621 * 8 6 4 10 10 H 1.48497 * 109.47032 * 29.99237 * 8 6 4 11 11 H 1.48497 * 109.47344 * 150.00025 * 8 6 4 12 12 N 1.46895 * 109.47247 * 239.99134 * 2 1 3 13 13 C 1.46900 * 110.99758 * 85.00495 * 12 2 1 14 14 H 1.09007 * 109.46815 * 324.99631 * 13 12 2 15 15 C 1.53001 * 109.47377 * 84.99800 * 13 12 2 16 16 C 1.50703 * 109.46929 * 205.00033 * 13 12 2 17 17 O 1.21286 * 120.00390 * 359.97438 * 16 13 12 18 18 N 1.34780 * 119.99467 * 179.97438 * 16 13 12 19 19 C 1.39934 * 119.99397 * 184.51701 * 18 16 13 20 20 C 1.38888 * 120.07413 * 324.09077 * 19 18 16 21 21 C 1.38093 * 119.93015 * 179.74538 * 20 19 18 22 22 C 1.38301 * 120.06501 * 0.52684 * 21 20 19 23 23 C 1.38256 * 120.14808 * 359.72960 * 22 21 20 24 24 S 1.76198 * 119.96710 * 179.97438 * 23 22 21 25 25 N 1.65596 * 107.21806 * 270.01654 * 24 23 22 26 26 O 1.42096 * 106.40438 * 23.56088 * 24 23 22 27 27 O 1.42102 * 106.40083 * 156.47970 * 24 23 22 28 28 C 1.38139 * 120.06876 * 0.02562 * 23 22 21 29 29 H 1.09001 * 109.46996 * 174.96066 * 1 2 3 30 30 H 1.08997 * 109.47348 * 294.96342 * 1 2 3 31 31 H 1.09003 * 109.46807 * 54.96374 * 1 2 3 32 32 H 0.96993 * 120.00248 * 355.09630 * 7 6 4 33 33 H 1.00904 * 111.00167 * 208.95516 * 12 2 1 34 34 H 1.08997 * 109.46727 * 60.00076 * 15 13 12 35 35 H 1.08995 * 109.46932 * 180.02562 * 15 13 12 36 36 H 1.08998 * 109.46880 * 300.00132 * 15 13 12 37 37 H 0.96994 * 120.00607 * 4.51763 * 18 16 13 38 38 H 1.08003 * 120.03335 * 359.97438 * 20 19 18 39 39 H 1.08001 * 119.96576 * 180.23428 * 21 20 19 40 40 H 1.08006 * 119.92509 * 179.74873 * 22 21 20 41 41 H 0.96998 * 119.99833 * 149.99702 * 25 24 23 42 42 H 0.97002 * 120.00011 * 330.00703 * 25 24 23 43 43 H 1.07996 * 120.03376 * 180.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.2812 -1.7602 1.1843 6 6 2.1741 -0.0199 2.4156 7 7 1.7518 1.2223 2.5074 8 14 2.9660 -0.8486 3.8905 9 1 1.9202 -1.5259 4.6983 10 1 3.9564 -1.8511 3.4223 11 1 3.6509 0.1724 4.7234 12 7 2.0197 -0.6926 -1.1993 13 6 2.0826 0.2223 -2.3468 14 1 1.2577 0.9327 -2.2907 15 6 3.4112 0.9806 -2.3223 16 6 1.9788 -0.5680 -3.6257 17 8 1.8642 -1.7748 -3.5853 18 7 2.0132 0.0662 -4.8145 19 6 1.8222 -0.6553 -5.9981 20 6 2.3158 -1.9485 -6.1123 21 6 2.1210 -2.6597 -7.2799 22 6 1.4446 -2.0816 -8.3387 23 6 0.9566 -0.7926 -8.2302 24 16 0.0962 -0.0605 -9.5823 25 7 1.2228 0.7073 -10.5222 26 8 -0.4129 -1.1336 -10.3623 27 8 -0.7268 0.9578 -9.0301 28 6 1.1438 -0.0777 -7.0631 29 1 -0.3633 -1.0237 -0.0903 30 1 -0.3634 0.4337 0.9316 31 1 -0.3633 0.5900 -0.8415 32 1 1.4060 1.6762 1.7230 33 1 2.9174 -1.1207 -1.0285 34 1 4.2360 0.2703 -2.3784 35 1 3.4576 1.6598 -3.1735 36 1 3.4863 1.5523 -1.3973 37 1 2.1705 1.0227 -4.8495 38 1 2.8482 -2.3987 -5.2875 39 1 2.5013 -3.6667 -7.3679 40 1 1.2971 -2.6385 -9.2523 41 1 1.0803 0.7926 -11.4779 42 1 2.0254 1.0716 -10.1171 43 1 0.7620 0.9290 -6.9788 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001460313654.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:45 Heat of formation + Delta-G solvation = -83.018807 kcal Electronic energy + Delta-G solvation = -27059.769354 eV Core-core repulsion = 23038.867901 eV Total energy + Delta-G solvation = -4020.901453 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.73277 -38.84156 -37.49681 -36.41098 -36.16538 -34.90265 -33.62255 -33.33579 -31.61929 -30.80149 -29.58543 -27.22936 -25.07166 -24.38510 -23.76119 -22.54371 -20.78065 -20.01312 -19.71056 -18.81760 -17.83319 -17.74244 -17.15837 -16.63843 -16.58991 -16.05463 -15.59419 -15.32406 -14.75193 -14.71275 -14.17832 -14.13170 -13.76765 -13.57777 -13.34843 -12.93544 -12.65980 -12.53209 -12.43441 -12.36221 -12.35332 -12.24909 -12.02996 -11.45684 -11.39169 -11.24783 -11.12853 -10.90184 -10.82906 -10.73551 -10.59175 -10.23696 -10.16140 -9.76179 -9.49557 -8.68182 -8.51306 -8.37548 -7.51343 -6.47268 -4.18844 0.01502 0.48398 0.88372 2.59271 2.73183 2.88626 3.16834 3.39560 3.41750 3.43680 3.57886 4.15441 4.42941 4.46263 4.65857 4.70398 4.86224 4.94310 5.07354 5.18645 5.22250 5.29027 5.34581 5.35967 5.53538 5.60446 5.71394 5.85419 5.92862 6.00750 6.11803 6.18981 6.45254 6.58076 6.63313 6.72897 6.81836 6.92969 7.22659 7.46358 7.75232 7.96668 8.16541 8.43262 8.48812 8.77581 9.54663 10.91854 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.027900 B = 0.002100 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.353396 B =13330.932657 C =13669.356196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.197 3.803 3 H 0.008 0.992 4 C -0.599 4.599 5 H 0.057 0.943 6 C 0.022 3.978 7 N -0.910 5.910 8 Si 1.072 2.928 9 H -0.287 1.287 10 H -0.288 1.288 11 H -0.285 1.285 12 N -0.662 5.662 13 C 0.070 3.930 14 H 0.101 0.899 15 C -0.176 4.176 16 C 0.519 3.481 17 O -0.496 6.496 18 N -0.684 5.684 19 C 0.139 3.861 20 C -0.063 4.063 21 C -0.121 4.121 22 C -0.038 4.038 23 C -0.659 4.659 24 S 2.705 3.295 25 N -1.249 6.249 26 O -0.963 6.963 27 O -0.960 6.960 28 C -0.056 4.056 29 H 0.045 0.955 30 H 0.049 0.951 31 H 0.011 0.989 32 H 0.270 0.730 33 H 0.344 0.656 34 H 0.061 0.939 35 H 0.054 0.946 36 H 0.075 0.925 37 H 0.411 0.589 38 H 0.149 0.851 39 H 0.137 0.863 40 H 0.142 0.858 41 H 0.420 0.580 42 H 0.417 0.583 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.506 0.988 -26.234 26.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.090 3.910 3 H 0.026 0.974 4 C -0.637 4.637 5 H 0.076 0.924 6 C -0.183 4.183 7 N -0.546 5.546 8 Si 0.900 3.100 9 H -0.214 1.214 10 H -0.214 1.214 11 H -0.211 1.211 12 N -0.294 5.294 13 C -0.045 4.045 14 H 0.118 0.882 15 C -0.236 4.236 16 C 0.307 3.693 17 O -0.367 6.367 18 N -0.332 5.332 19 C 0.043 3.957 20 C -0.083 4.083 21 C -0.140 4.140 22 C -0.058 4.058 23 C -0.747 4.747 24 S 2.793 3.207 25 N -0.923 5.923 26 O -0.953 6.953 27 O -0.949 6.949 28 C -0.077 4.077 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.030 0.970 32 H 0.081 0.919 33 H 0.163 0.837 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.247 0.753 38 H 0.167 0.833 39 H 0.155 0.845 40 H 0.159 0.841 41 H 0.250 0.750 42 H 0.244 0.756 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.107 -0.050 -24.676 24.871 hybrid contribution 1.238 0.819 -1.161 1.884 sum 4.345 0.769 -25.837 26.211 Atomic orbital electron populations 1.21841 0.98551 0.99822 0.98197 1.19329 0.91814 0.92923 0.86929 0.97413 1.22008 1.48073 0.97962 0.95696 0.92430 1.25845 0.95082 0.96169 1.01209 1.70786 1.38869 1.12436 1.32508 0.83491 0.76402 0.75029 0.75029 1.21375 1.21389 1.21061 1.60429 1.33480 1.31145 1.04310 1.21466 0.98649 0.93984 0.90354 0.88155 1.22476 0.97319 1.00743 1.03024 1.21433 0.74556 0.88943 0.84406 1.90665 1.45143 1.14314 1.86576 1.43807 1.72860 1.12306 1.04185 1.17845 0.97587 0.93458 0.86798 1.21753 0.95441 0.93301 0.97844 1.21253 0.99511 1.00482 0.92751 1.20896 0.93142 0.92327 0.99471 1.30402 1.21068 1.06616 1.16653 1.01477 0.72682 0.73570 0.72980 1.53140 1.40214 1.77034 1.21865 1.93597 1.77310 1.55298 1.69056 1.93625 1.63972 1.58206 1.79137 1.20683 0.94655 1.00522 0.91888 0.93580 0.93181 0.96990 0.91912 0.83663 0.92024 0.92657 0.90601 0.75266 0.83336 0.84515 0.84051 0.74958 0.75586 0.83770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 9.24 37.16 0.34 -2.59 16 2 C 0.20 4.71 2.04 -68.86 -0.14 4.57 16 3 H 0.01 0.20 5.93 -51.93 -0.31 -0.10 16 4 C -0.60 -16.12 8.28 -34.44 -0.29 -16.41 16 5 H 0.06 1.59 7.82 -52.49 -0.41 1.18 16 6 C 0.02 0.60 5.45 -17.82 -0.10 0.50 16 7 N -0.91 -26.23 13.63 55.43 0.76 -25.47 16 8 Si 1.07 24.49 29.91 -169.99 -5.08 19.41 16 9 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 12 N -0.66 -13.76 5.54 -102.16 -0.57 -14.33 16 13 C 0.07 1.13 2.82 -68.86 -0.19 0.94 16 14 H 0.10 1.60 7.16 -51.93 -0.37 1.23 16 15 C -0.18 -2.36 9.04 37.16 0.34 -2.02 16 16 C 0.52 7.99 7.06 -10.98 -0.08 7.92 16 17 O -0.50 -9.39 13.92 5.55 0.08 -9.31 16 18 N -0.68 -7.80 5.26 -9.86 -0.05 -7.85 16 19 C 0.14 1.61 6.28 -83.69 -0.53 1.08 16 20 C -0.06 -0.75 8.69 -39.39 -0.34 -1.09 16 21 C -0.12 -1.16 10.04 -39.61 -0.40 -1.56 16 22 C -0.04 -0.34 9.52 -39.55 -0.38 -0.72 16 23 C -0.66 -6.00 5.97 -39.61 -0.24 -6.24 16 24 S 2.70 22.27 6.28 -107.50 -0.68 21.59 16 25 N -1.25 -4.79 9.52 60.35 0.57 -4.21 16 26 O -0.96 -10.70 17.28 -57.17 -0.99 -11.69 16 27 O -0.96 -11.24 17.28 -57.17 -0.99 -12.23 16 28 C -0.06 -0.55 9.44 -39.39 -0.37 -0.92 16 29 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.05 1.23 7.84 -51.93 -0.41 0.83 16 31 H 0.01 0.23 7.50 -51.93 -0.39 -0.15 16 32 H 0.27 7.68 6.39 -40.82 -0.26 7.41 16 33 H 0.34 7.27 8.09 -39.29 -0.32 6.95 16 34 H 0.06 0.82 8.13 -51.93 -0.42 0.39 16 35 H 0.05 0.54 7.47 -51.93 -0.39 0.15 16 36 H 0.08 1.16 7.43 -51.93 -0.39 0.78 16 37 H 0.41 3.31 8.12 -40.82 -0.33 2.98 16 38 H 0.15 1.97 6.29 -52.48 -0.33 1.64 16 39 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 40 H 0.14 1.00 7.61 -52.48 -0.40 0.60 16 41 H 0.42 0.93 8.96 -34.46 -0.31 0.62 16 42 H 0.42 0.70 8.96 -34.47 -0.31 0.39 16 43 H 0.14 1.17 7.61 -52.49 -0.40 0.77 16 LS Contribution 371.33 15.07 5.60 5.60 Total: -1.00 -37.01 371.33 -9.10 -46.10 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -5.38 Total: 8.92 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: -2.37 Total: -16.54 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: 0.71 Total: -51.86 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: -1.90 Total: -33.23 kcal Atomic # 14 Polarization: 24.49 SS G_CDS: -5.08 Total: 19.41 kcal Atomic # 16 Polarization: 22.27 SS G_CDS: -0.68 Total: 21.59 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -37.01 -9.10 -46.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460313654.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.914 kcal (2) G-P(sol) polarization free energy of solvation -37.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds